Update to sagemath 7.3

This commit is contained in:
pcpa 2016-08-20 13:51:55 -04:00
parent a3d306800c
commit 0fdebf23cf
35 changed files with 3245 additions and 874 deletions

View file

@ -1,6 +1,7 @@
%global __provides_exclude_from .*/site-packages/.*\\.so
%bcond_without bundled_pari
%bcond_with bundled_pexpect
# for faster full rpm test builds
%ifarch %{ix86} x86_64
@ -15,6 +16,9 @@
# use an workaround to match upstream sagemath patched sphinx
%bcond_without sphinx_hack
# use workaround to match upstream sagemath patched cython
%bcond_without cython_hack
%ifarch x86_64
%bcond_without fes
%else
@ -27,17 +31,20 @@
%global SAGE_TIMEOUT_LONG 180
%global conway_polynomials_pkg conway_polynomials-0.4
%global cysignals_pkg cysignals-1.1.1
%global elliptic_curves_pkg elliptic_curves-0.8
%global flintqs_pkg flintqs-20070817
%global graphs_pkg graphs-20130920
%global flintqs_pkg flintqs-1.0
%global graphs_pkg graphs-20151224
%if %{with bundled_pari}
%global pari_pkg pari-2.8-1637-g489005a
%global pari_pkg pari-2.8-2771-gb70b447
%endif
%if %{with bundled_pexpect}
%global pexpect_pkg pexpect-4.1.0
%endif
%global pexpect_pkg pexpect-2.0
%global polytopes_db_pkg polytopes_db-20120220
%global rubiks_pkg rubiks-20070912
%global sagenb_pkg sagenb-0.11.4
%global sagetex_pkg sagetex-2.3.4
%global sagenb_pkg sagenb-0.13
%global sagetex_pkg sagetex-3.0
%global SAGE_ROOT %{_libdir}/sagemath
%global SAGE_LOCAL %{SAGE_ROOT}/local
@ -51,8 +58,8 @@
Name: sagemath
Group: Applications/Engineering
Summary: A free open-source mathematics software system
Version: 6.8
Release: 14%{?dist}
Version: 7.3
Release: 1%{?dist}
# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
# Additionally, every $files section has a comment with the license name
# before files with that license
@ -90,85 +97,101 @@ Patch6: %{name}-sagenb.patch
# do not attempt to create state files in system directories
Patch7: %{name}-readonly.patch
# do not link explicitly to png12
Patch8: %{name}-png.patch
# work with all maxima-runtime lisp backend packages
Patch9: %{name}-maxima.patch
Patch8: %{name}-maxima.patch
# execute 4ti2 programs in $PATH not in $SAGE_ROOT/local/bin
Patch10: %{name}-4ti2.patch
Patch9: %{name}-4ti2.patch
# http://trac.sagemath.org/sage_trac/ticket/12992
# http://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=1317
Patch11: %{name}-pari.patch
Patch10: %{name}-pari.patch
# use jmol itself to export preview images
# FIXME besides not using X and told so, fails if DISPLAY is not set
Patch12: %{name}-jmol.patch
Patch11: %{name}-jmol.patch
# only cremona mini database built and installed
# FIXME add a package with the full cremona database
# FIXME actually it should be already available in pari-elldata
Patch13: %{name}-cremona.patch
Patch12: %{name}-cremona.patch
# lrslib is a requires
Patch14: %{name}-lrslib.patch
Patch13: %{name}-lrslib.patch
# correct path to the nauty geng program
# http://cs.anu.edu.au/~bdm/nauty/
# http://pallini.di.uniroma1.it/
Patch15: %{name}-nauty.patch
Patch14: %{name}-nauty.patch
# Use system gap hap package
Patch16: %{name}-gap-hap.patch
# gap hap package not (yet) available
# http://www-gap.mcs.st-and.ac.uk/Packages/hap.html
Patch15: %{name}-gap-hap.patch
# correct path to Lfunction include
Patch17: %{name}-lcalc.patch
Patch16: %{name}-lcalc.patch
# avoid assertion in coin backend
Patch18: %{name}-cbc.patch
Patch17: %{name}-cbc.patch
# Use system gap directories
Patch19: %{name}-libgap.patch
Patch18: %{name}-libgap.patch
# Build fes
Patch20: %{name}-fes-build.patch
Patch19: %{name}-fes-build.patch
# Disable fes
Patch21: %{name}-fes.patch
Patch20: %{name}-fes.patch
# Side effect of using distro packages
# https://bugzilla.redhat.com/show_bug.cgi?id=974769
Patch22: %{name}-sympy.patch
Patch21: %{name}-sympy.patch
# Fix a name clash with NTL
Patch23: %{name}-ntl.patch
# Fix a changed interface in NTL 9.x
Patch24: %{name}-ntl9.patch
Patch22: %{name}-ntl.patch
# Correct unable to start QEPCAD within sage
# https://bugzilla.redhat.com/show_bug.cgi?id=1243590
Patch25: %{name}-qepcad.patch
# Temporary correction for invalid conversion from
# 'int' to 'polybori::COrderEnums::ordercodes'
Patch26: %{name}-polybori.patch
Patch23: %{name}-qepcad.patch
# Correct path to arb headers
Patch27: %{name}-arb.patch
Patch24: %{name}-arb.patch
# Adapt to header file changes in givaro 4 and linbox 1.4
Patch28: %{name}-givaro.patch
Patch25: %{name}-givaro.patch
# No support for f" notation
Patch26: %{name}-nofstring.patch
# https://bugzilla.redhat.com/show_bug.cgi?id=1296652
Patch27: sig_includes.patch
# Add missing include paths
Patch28: %{name}-includes.patch
# https://trac.sagemath.org/ticket/20926
# #error This file requires compiler and library support for the ISO C++ \
# 2011 standard. This support must be enabled with the -std=c++11 \
# or -std=gnu++11 compiler options.
Patch29: %{name}-gcc6.patch
# Use ipython3 (mostly a rediff from sagemath-6.8 sage/repl)
Patch30: %{name}-ipython3.patch
# Use atlas blas
Patch31: %{name}-atlas.patch
# Correct side effect of sagemath-ipython3 patch
Patch32: %{name}-is_in_terminal.patch
BuildRequires: 4ti2
BuildRequires: arb-devel
BuildRequires: atlas-devel
BuildRequires: brial-devel
BuildRequires: cddlib-tools
BuildRequires: cliquer-devel
BuildRequires: coin-or-Cbc-devel
BuildRequires: cryptominisat-devel
BuildRequires: Cython >= 0.21.1
BuildRequires: Cython
BuildRequires: desktop-file-utils
BuildRequires: dos2unix
BuildRequires: dvipng
@ -178,15 +201,12 @@ BuildRequires: factory-devel
%if %{with fes}
BuildRequires: fes-devel
%endif
BuildRequires: flint-devel >= 2.3
BuildRequires: flint-devel
BuildRequires: gmp-ecm-devel
BuildRequires: gap
BuildRequires: GAPDoc
BuildRequires: gap-libs
BuildRequires: gap-pkg-atlasrep
BuildRequires: gap-pkg-ctbllib
BuildRequires: gap-pkg-design
BuildRequires: gap-pkg-hap
BuildRequires: gap-pkg-sonata
BuildRequires: gap-pkg-tomlib
BuildRequires: gc-devel
@ -230,10 +250,13 @@ BuildRequires: python-flask-silk
BuildRequires: python-ipython
BuildRequires: python-matplotlib
BuildRequires: python-networkx
%if %{without bundled_pexpect}
BuildRequires: python-pexpect
%endif
BuildRequires: python-pkgconfig
BuildRequires: python-sphinx
BuildRequires: python-twisted
BuildRequires: python-twisted-web
BuildRequires: polybori-devel
BuildRequires: R
BuildRequires: ratpoints-devel
BuildRequires: readline-devel
@ -259,10 +282,7 @@ Requires: firefox
Requires: gap
Requires: GAPDoc
Requires: gap-libs
Requires: gap-pkg-atlasrep
Requires: gap-pkg-ctbllib
Requires: gap-pkg-design
Requires: gap-pkg-hap
Requires: gap-pkg-sonata
Requires: gap-pkg-tomlib
Requires: genus2reduction
@ -273,10 +293,12 @@ Requires: jsmol
Requires: jsmath-fonts
Requires: lrslib-utils
Requires: maxima-gui
Requires: mathjax
Requires: maxima-runtime-ecl
Requires: nauty
Requires: palp
Requires: pari-gp
Requires: python-brial
Requires: python-crypto
Requires: python-cvxopt
Requires: python-docutils
@ -287,7 +309,9 @@ Requires: python-flask-silk
Requires: python-ipython
Requires: python-matplotlib
Requires: python-networkx
Requires: python-polybori
%if %{without bundled_pexpect}
Requires: python-pexpect
%endif
Requires: python-sphinx
Requires: python-twisted
Requires: python-twisted-mail
@ -547,6 +571,11 @@ computations, and plots from the Sage mathematics software suite
%prep
%setup -q -n sage-%{version}
pushd build/pkgs/cysignals
tar jxf ../../../upstream/%{cysignals_pkg}.tar.bz2
mv %{cysignals_pkg} src
popd
pushd build/pkgs/conway_polynomials
tar jxf ../../../upstream/%{conway_polynomials_pkg}.tar.bz2
mv %{conway_polynomials_pkg} src
@ -558,13 +587,8 @@ pushd build/pkgs/elliptic_curves
popd
pushd build/pkgs/flintqs
tar jxf ../../../upstream/%{flintqs_pkg}.tar.bz2
tar zxf ../../../upstream/%{flintqs_pkg}.tar.bz2
mv %{flintqs_pkg} src
pushd src
for diff in `ls ../patches/*.patch`; do
patch -p1 < $diff
done
popd
popd
pushd build/pkgs/graphs
@ -586,8 +610,9 @@ pushd build/pkgs/pari
popd
%endif
%if %{with bundled_pexpect}
pushd build/pkgs/pexpect
tar jxf ../../../upstream/%{pexpect_pkg}.tar.bz2
tar zxf ../../../upstream/%{pexpect_pkg}.tar.gz
mv %{pexpect_pkg} src
pushd src
for diff in `ls ../patches/*.patch`; do
@ -595,6 +620,7 @@ pushd build/pkgs/pexpect
done
popd
popd
%endif
pushd build/pkgs/polytopes_db
tar jxf ../../../upstream/%{polytopes_db_pkg}.tar.bz2
@ -613,15 +639,12 @@ pushd build/pkgs/rubiks
popd
pushd build/pkgs/sagenb
tar xf ../../../upstream/%{sagenb_pkg}.tar
tar jxf ../../../upstream/%{sagenb_pkg}.tar.bz2
mv %{sagenb_pkg} src
pushd src
tar zxf %{sagenb_pkg}.tar.gz
popd
popd
pushd build/pkgs/sagetex
tar jxf ../../../upstream/%{sagetex_pkg}.tar.bz2
tar zxf ../../../upstream/%{sagetex_pkg}.tar.gz
mv %{sagetex_pkg} src
popd
@ -634,12 +657,12 @@ popd
%patch7
%patch8
%patch9
%patch10
%if %{without bundled_pari}
%patch11
%patch10
%endif
%patch11
%patch12
%patch13
%patch14
@ -647,55 +670,51 @@ popd
%patch16
%patch17
%patch18
%patch19
%if %{with fes}
%patch20
%patch19
%else
%patch21
%patch20
%endif
%patch21
%patch22
%patch23
%patch24
%patch25
%patch26
%patch27
%patch28
%patch29
%patch30
%patch31
sed -e 's|@@SAGE_ROOT@@|%{SAGE_ROOT}|' \
-e 's|@@SAGE_DOC@@|%{SAGE_DOC}|' \
-i src/sage/env.py
sed -e 's|@@CYSIGNALS@@|%{_builddir}%{python_sitearch}/cysignals|' \
-i src/setup.py
sed -e "s|, 'flask-oldsessions>=0.10'||" \
-e "s|'http://github.com/mitsuhiko/flask-oldsessions/tarball/master#egg=flask-oldsessions-0.10'||" \
-i build/pkgs/sagenb/src/%{sagenb_pkg}/setup.py
-i build/pkgs/sagenb/src/setup.py
#------------------------------------------------------------------------
# ensure proper/preferred libatlas is in linker path
perl -pi -e 's|^(extra_link_args = ).*|$1\["-L%{_libdir}/atlas"\]|;' src/sage/misc/cython.py
%if 0%{?fedora} > 20
perl -pi -e "s|return 'atlas'|return 'satlas'|;" src/sage/misc/cython.py
%endif
# some .c files are not (re)generated
find src/sage \( -name \*.pyx -o -name \*.pxd \) | xargs touch
# remove bundled jar files before build
rm build/pkgs/sagenb/src/%{sagenb_pkg}/sagenb/data/sage3d/lib/sage3d.jar
rm build/pkgs/sagenb/src/sagenb/data/sage3d/lib/sage3d.jar
# remove binary egg
rm -r build/pkgs/sagenb/src/%{sagenb_pkg}/sagenb.egg-info
rm -r build/pkgs/sagenb/src/sagenb.egg-info
# fix Singular paths
sed -e "s,SINGULARPATH=\",&%{_libdir}/Singular/LIB:," \
-e "s,\(SINGULAR_EXECUTABLE=\"\).*\",\1%{_libdir}/Singular/Singular\"," \
-i src/bin/sage-env
# fix givaro interface on 32-bit platforms
if [ "%{__isa_bits}" == "32" ]; then
sed -i 's/int64_t/int32_t/' src/sage/libs/singular/singular.pyx
fi
########################################################################
%build
export CC=%{__cc}
@ -755,23 +774,37 @@ sed -i 's|\(^extra_link_args = \[\) \]|\1"-L%{_builddir}/lib"\]|' \
src/setup.py
%endif
pushd build/pkgs/cysignals/src
%__python2 setup.py build
%__python2 setup.py install --root %{_builddir}
popd
export PYTHONPATH=%{_builddir}%{python_sitearch}:$PYTHONPATH
%if %{with cython_hack}
cp -far %{python_sitearch}/Cython %{_builddir}%{python_sitearch}
PATCH=$PWD/build/pkgs/cython/patches/pxi_sys_path.patch
pushd %{_builddir}%{python_sitearch}
patch -p1 < $PATCH
patch -p1 < %{PATCH27}
popd
%endif
# Restore environment used to generate bundled interfaces
export PATH=$save_PATH
export SAGE_LOCAL=$save_LOCAL
%if 1
pushd src
%__python2 -u ./setup.py build
popd
%endif
#------------------------------------------------------------------------
pushd build/pkgs/sagenb/src/%{sagenb_pkg}
pushd build/pkgs/sagenb/src
%__python2 ./setup.py build
popd
#------------------------------------------------------------------------
pushd build/pkgs/flintqs/src
%configure
make %{?_smp_mflags} CPP="g++ %{optflags} -fPIC"
popd
@ -779,7 +812,6 @@ pushd build/pkgs/rubiks/src
make %{?_smp_mflags} CC="gcc -fPIC" CXX="g++ -fPIC" CFLAGS="%{optflags}" CXXFLAGS="%{optflags}"
popd
%if 1
# Remove buildroot reference from cython comments
perl -pi -e 's|%{buildroot}||g;' `find src/build/cythonized -type f`
@ -789,7 +821,6 @@ rm -f `grep -lr "%{buildroot}" src/build/temp.linux-*/`
pushd src
%__python2 ./setup.py build
popd
%endif
# last build command
rm -fr $DOT_SAGE
@ -828,9 +859,51 @@ ln -sf %{_libdir} $SAGE_LOCAL/lib
ln -sf %{_includedir} $SAGE_LOCAL/include
ln -sf %{_datadir} $SAGE_LOCAL/share
#------------------------------------------------------------------------
%if %{with cython_hack}
mkdir -p %{buildroot}%{python_sitearch}
cp -far %{python_sitearch}/Cython %{buildroot}%{python_sitearch}
PATCH=$PWD/build/pkgs/cython/patches/pxi_sys_path.patch
pushd %{buildroot}%{python_sitearch}
patch -p1 < $PATCH
patch -p1 < %{PATCH30}
popd
%endif
#------------------------------------------------------------------------
pushd build/pkgs/cysignals/src
pushd docs
%__make html
popd
%__python2 setup.py install --root %{buildroot}
mv %{buildroot}%{_bindir}/cysignals* $SAGE_LOCAL/bin
popd
#------------------------------------------------------------------------
pushd src/ext
mkdir -p $SAGE_ETC
for dir in \
gap \
graphs \
images \
magma \
mwrank \
notebook-ipython; do
COUNT=`find $dir -type f | wc -l `
if [ $COUNT -gt 0 ]; then
cp -far $dir $SAGE_ETC
fi
cp -far pari $SAGE_ETC
done
cp -fa %{SOURCE1} $SAGE_ETC
popd
#------------------------------------------------------------------------
pushd src
%__python2 -u setup.py install --root=%{buildroot}
# FIXME finishes but fails when exiting
# from sage.misc.randstate import current_randstate
# ImportError: No module named randstate
%__python2 -u setup.py install --root=%{buildroot} || :
%if %{with docs}
# install documentation sources
rm -fr $SAGE_DOC/{common,en,fr}
@ -846,7 +919,7 @@ sed -i 's|\(^ include_directories = \[SAGE_INC,\).*|\1|' \
%endif
#------------------------------------------------------------------------
pushd build/pkgs/sagenb/src/%{sagenb_pkg}
pushd build/pkgs/sagenb/src
rm -f %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
%__python2 setup.py install --root=%{buildroot} --install-purelib=%{python_sitearch}
# jsmol
@ -857,12 +930,16 @@ pushd build/pkgs/sagenb/src/%{sagenb_pkg}
ln -sf %{SAGE_LOCAL}/bin/sage3d %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
%endif
ln -sf %{python_sitearch}/sagenb %{buildroot}%{SAGE_SRC}/sagenb
# use system mathjax
ln -sf %{_jsdir}/mathjax %{buildroot}%{python_sitearch}/sagenb/data/mathjax
popd
#------------------------------------------------------------------------
%if %{with bundled_pexpect}
pushd build/pkgs/pexpect/src
cp -fa {ANSI,FSM,pexpect,pxssh,screen}.py $SAGE_PYTHONPATH
cp -fa pexpect $SAGE_PYTHONPATH
popd
%endif
#------------------------------------------------------------------------
cp -fa COPYING.txt $SAGE_ROOT
@ -883,7 +960,7 @@ install -p -m755 src/bin/sage $SAGE_LOCAL/bin
#------------------------------------------------------------------------
pushd build/pkgs/flintqs/src
cp -fa QuadraticSieve $SAGE_LOCAL/bin
cp -fa src/QuadraticSieve $SAGE_LOCAL/bin
popd
pushd build/pkgs/rubiks/src
@ -959,25 +1036,6 @@ pushd build/pkgs/elliptic_curves
%__python2 ./spkg-install
popd
#------------------------------------------------------------------------
pushd src/ext
mkdir -p $SAGE_ETC
for dir in \
gap \
graphs \
images \
magma \
mwrank \
notebook-ipython; do
COUNT=`find $dir -type f | wc -l `
if [ $COUNT -gt 0 ]; then
cp -far $dir $SAGE_ETC
fi
cp -far pari $SAGE_ETC
done
cp -fa %{SOURCE1} $SAGE_ETC
popd
#------------------------------------------------------------------------
pushd build/pkgs/graphs
mkdir -p $SAGE_SHARE/graphs
@ -994,12 +1052,11 @@ popd
pushd build/pkgs/sagetex/src
%__python2 setup.py install --root=%{buildroot} --install-purelib=%{python_sitearch}
install -p -m 0644 -D %{SOURCE2} \
%{buildroot}%{_datadir}/texmf/tex/generic/sagetex/makecmds.sty
mv %{buildroot}%{_docdir}/{sagetex,%{sagetex_pkg}}
mv %{buildroot}%{_datadir}/texmf/tex/generic/sagetex/CONTRIBUTORS \
%{buildroot}%{_docdir}/%{sagetex_pkg}
%{buildroot}%{_datadir}/texmf/tex/latex/sagetex/makecmds.sty
mv %{buildroot}%{_datadir}/texmf/tex/latex/sagetex/CONTRIBUTORS \
%{buildroot}%{_docdir}/sagetex
for file in PKG-INFO README; do
install -p -m 0644 $file %{buildroot}%{_docdir}/%{sagetex_pkg}/$file
install -p -m 0644 $file %{buildroot}%{_docdir}/sagetex/$file
done
popd
@ -1018,6 +1075,7 @@ export SAGE_EXTCODE="$SAGE_ETC"
export SAGE_ETC="$SAGE_ETC"
export SAGE_SRC="%{buildroot}%{SAGE_SRC}"
##export SAGE_DOC="$SAGE_DOC"
##export SAGE_DOC_SRC="\$SAGE_DOC"
module load 4ti2-%{_arch}
module load lrcalc-%{_arch}
module load surf-geometry-%{_arch}
@ -1064,16 +1122,19 @@ popd
%if %{with docs}
#------------------------------------------------------------------------
cp -f $SAGE_PYTHONPATH/{ANSI,FSM,pexpect,pxssh,screen}.py %{buildroot}%{python_sitearch}
%if %{with bundled_pexpect}
cp -fa $SAGE_PYTHONPATH/pexpect %{buildroot}%{python_sitearch}
%endif
# Build documentation, using %#{buildroot} environment
export SAGE_SETUP=$PWD/src/sage_setup
pushd src/doc
export SAGE_DOC=`pwd`
export PATH=%{buildroot}%{_bindir}:$SAGE_LOCAL/bin:$PATH
export SINGULARPATH=%{_libdir}/Singular/LIB
export SINGULAR_BIN_DIR=%{_libdir}/Singular
export LD_LIBRARY_PATH=%{_libdir}/atlas:$LD_LIBRARY_PATH
export PYTHONPATH=%{buildroot}%{python_sitearch}:$SAGE_PYTHONPATH:$SAGE_DOC
export PYTHONPATH=$SAGE_SETUP:%{buildroot}%{python_sitearch}:$SAGE_PYTHONPATH:$SAGE_DOC
%if %{with sphinx_hack}
cp -far %{python_sitelib}/sphinx %{buildroot}%{python_sitearch}
@ -1083,22 +1144,18 @@ pushd src/doc
# there we go
ln -sf %{buildroot}%{SAGE_DOC} %{buildroot}%{SAGE_SRC}/doc
LANGUAGES="ca de en fr hu it pt ru tr" \
%__python2 common/builder.py --no-pdf-links -k all html
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
cp -far output $SAGE_DOC
export SAGE_DOC_SRC=$SAGE_DOC
# python -m sage_setup.docbuild
# FIXME there is a 'ja' translation, but adding it to $LANGUAGES
# does not get documentation built
LANGUAGES="ca de en fr hu it pt ru tr" \
%__python2 -m docbuild --no-pdf-links -k all html
rm -f %{buildroot}%{SAGE_SRC}/doc
ln -sf %{SAGE_DOC} %{buildroot}%{SAGE_SRC}/doc
# should not be required and encodes buildroot
rm -fr $SAGE_DOC/output/doctrees
# FIXME missing; but at least some are not. Maybe this can be removed?
for css in $(find $SAGE_DOC/output/html -name classic.css); do
pushd $(dirname $css)
ln -sf classic.css default.css
popd
done
popd
%if %{with check}
@ -1110,12 +1167,18 @@ install -p -m644 $DOT_SAGE/tmp/test.log $SAGE_DOC/test.log
sed -i 's|%{buildroot}||g' $SAGE_DOC/test.log
%endif
rm -f %{buildroot}%{python_sitearch}/{ANSI,FSM,pexpect,pxssh,screen}.py{,c}
%if %{with bundled_pexpect}
rm -f %{buildroot}%{python_sitearch}/pexpect
%endif
%if %{with sphinx_hack}
rm -fr %{buildroot}%{python_sitearch}/sphinx
%endif
%if %{with cython_hack}
rm -fr %{buildroot}%{python_sitearch}/Cython
%endif
# More wrong buildroot references
perl -pi -e 's|%{buildroot}||g;' \
-e "s|$PWD/src/doc|%{SAGE_DOC}|g;" \
@ -1139,7 +1202,7 @@ ln -sf %{SAGE_SHARE} $SAGE_ROOT/share
ln -sf src $SAGE_ROOT/devel
# Install menu and icons
pushd build/pkgs/sagenb/src/%{sagenb_pkg}/sagenb/data
pushd build/pkgs/sagenb/src/sagenb/data
install -p -m644 -D sage/images/icon128x128.png %{buildroot}%{_datadir}/pixmaps/%{name}.png
popd
mkdir -p %{buildroot}%{_datadir}/applications
@ -1176,9 +1239,6 @@ rm -fr %{buildroot}%{SAGE_DOC}/output/inventory
find %{buildroot}%{SAGE_DOC} -type d -name _sources | xargs rm -fr
%endif
# remove bundles fonts
rm -r %{buildroot}%{python_sitearch}/sagenb/data/mathjax/fonts
# remove .po files
rm %{buildroot}%{python_sitearch}/sagenb/translations/*/LC_MESSAGES/*.po
@ -1204,7 +1264,7 @@ install -D -m 644 %{_builddir}/share/pari/pari.desc \
# make sure pari is in link path
ln -s libpari-gmp-2.8.so.0.0.0 %{buildroot}%{SAGE_ROOT}/lib/libpari.so
perl -pi -e 's|^(extra_link_args = \[.*)]|$1, "-L%{SAGE_ROOT}/lib"\]|;' %{buildroot}%{python_sitearch}/sage/misc/cython.py
perl -pi -e 's|(libdirs = cblas_library_dirs)|$1 + \["%{SAGE_ROOT}/lib"\]|;' %{buildroot}%{python_sitearch}/sage/misc/cython.py
%endif
# remove sage_setup
@ -1297,8 +1357,6 @@ exit 0
%endif
%{SAGE_SRC}/sage
%dir %{SAGE_PYTHONPATH}
# MIT
%{SAGE_PYTHONPATH}/*.py*
# GPLv2+
%{_bindir}/sage
%{_datadir}/pixmaps/%{name}.png
@ -1312,8 +1370,11 @@ exit 0
#------------------------------------------------------------------------
%files core
# GPLv2+
%{SAGE_LOCAL}/bin/cysignals*
%{python_sitearch}/sage
%{python_sitearch}/sage-*.egg-info
%{python_sitearch}/cysignals
%{python_sitearch}/cysignals-*.egg-info
#------------------------------------------------------------------------
%files data
@ -1337,11 +1398,9 @@ exit 0
%files data-etc
# GPLv2+
%{SAGE_ETC}/gap
#%#{SAGE_ETC}/graphs
%{SAGE_ETC}/images
%{SAGE_ETC}/magma
%{SAGE_ETC}/mwrank
#%#{SAGE_ETC}/notebook-ipython
%{SAGE_ETC}/pari
#------------------------------------------------------------------------
@ -1361,62 +1420,62 @@ exit 0
# GPLv2+
%dir %{SAGE_DOC}
%{SAGE_DOC}/common
%dir %{SAGE_DOC}/output
%dir %{SAGE_DOC}/output/html
%{SAGE_DOC}/output
%dir %{SAGE_DOC}/html
#------------------------------------------------------------------------
%files doc-ca
# GPLv2+
%{SAGE_DOC}/ca
%{SAGE_DOC}/output/html/ca
%{SAGE_DOC}/html/ca
#------------------------------------------------------------------------
%files doc-de
# GPLv2+
%{SAGE_DOC}/de
%{SAGE_DOC}/output/html/de
%{SAGE_DOC}/html/de
#------------------------------------------------------------------------
%files doc-en
# GPLv2+
%{SAGE_DOC}/en
%{SAGE_DOC}/output/html/en
%{SAGE_DOC}/html/en
#------------------------------------------------------------------------
%files doc-fr
# GPLv2+
%{SAGE_DOC}/fr
%{SAGE_DOC}/output/html/fr
%{SAGE_DOC}/html/fr
#------------------------------------------------------------------------
%files doc-hu
# GPLv2+
%{SAGE_DOC}/hu
%{SAGE_DOC}/output/html/hu
%{SAGE_DOC}/html/hu
#------------------------------------------------------------------------
%files doc-it
# GPLv2+
%{SAGE_DOC}/it
%{SAGE_DOC}/output/html/it
%{SAGE_DOC}/html/it
#------------------------------------------------------------------------
%files doc-pt
# GPLv2+
%{SAGE_DOC}/pt
%{SAGE_DOC}/output/html/pt
%{SAGE_DOC}/html/pt
#------------------------------------------------------------------------
%files doc-ru
# GPLv2+
%{SAGE_DOC}/ru
%{SAGE_DOC}/output/html/ru
%{SAGE_DOC}/html/ru
#------------------------------------------------------------------------
%files doc-tr
# GPLv2+
%{SAGE_DOC}/tr
%{SAGE_DOC}/output/html/tr
%{SAGE_DOC}/html/tr
# with docs
%endif
@ -1443,7 +1502,7 @@ exit 0
%{python_sitearch}/sagenb/data/jqueryui
# Public Domain
%{python_sitearch}/sagenb/data/json
# ASL 2.0
# Symbolic link to $_jsdir/mathjax
%{python_sitearch}/sagenb/data/mathjax
# Empty (do not run doctests flag file)
%{python_sitearch}/sagenb/data/nodoctest.py*
@ -1486,6 +1545,7 @@ exit 0
%lang(de_AT) %{python_sitearch}/sagenb/translations/fr_FR
%lang(pt_BR) %{python_sitearch}/sagenb/translations/pt_BR
%lang(ru_RU) %{python_sitearch}/sagenb/translations/ru_RU
%lang(uk_UA) %{python_sitearch}/sagenb/translations/uk_UA
#------------------------------------------------------------------------
%files rubiks
@ -1503,11 +1563,17 @@ exit 0
%files sagetex
# GPLv2+
%{python_sitearch}/sagetex*
%{_datadir}/texmf/tex/generic/sagetex
%doc %{_docdir}/%{sagetex_pkg}
%{_datadir}/texmf/tex/latex/sagetex
%doc %{_docdir}/sagetex
########################################################################
%changelog
* Sat Aug 20 2016 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 7.3-1
- Update to sagemath 7.3
- Switch from polybori to brial
- Default to use system pexpect
- Use system mathjax
* Fri Aug 12 2016 Jerry James <loganjerry@gmail.com> - 6.8-14
- Rebuild for fflas-ffpack 2.2.2, givaro 4.0.2, and linbox 1.4.2
- GAP packages atlasrep, design, and hap are now available