mirror of
https://src.fedoraproject.org/rpms/sagemath.git
synced 2025-04-22 11:45:56 -04:00
Version 9.0 (bz 1756780, 1770880).
Also: - Drop upstreamed -ecm and -primecount patches. - Add -escape patch. - The old notebook (sagenb) is no longer shipped, so drop the -sagenb and -sagenb-python3 patches, the -notebook subpackage, and some BRs. - New -jupyter subpackage. - Add suitesparse BR. - Drop pathlib2 BR (bz 1797116).
This commit is contained in:
Jerry James
parent
65c5f9e579
commit
2fac775552
13 changed files with 3724 additions and 956 deletions
270
sagemath.spec
270
sagemath.spec
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@ -18,9 +18,6 @@
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%bcond_with docs
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%endif
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# not functional due to missing jar dependencies
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%bcond_with sage3d
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# use a workaround to match upstream sagemath patched sphinx
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%bcond_without sphinx_hack
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@ -40,7 +37,7 @@
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%global combinatorial_designs_pkg combinatorial_designs-20140630
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%global conway_polynomials_pkg conway_polynomials-0.5
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%global cremona_ver 2016-10-17
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%global cremona_ver 2019-10-29
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%global elliptic_curves_pkg elliptic_curves-0.8.1
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%global flintqs_pkg flintqs-1.0
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%global graphs_pkg graphs-20161026
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@ -59,8 +56,7 @@
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%endif
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%global polytopes_db_pkg polytopes_db-20170220
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%global rubiks_pkg rubiks-20070912
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%global sagenb_pkg sagenb-1.1.2
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%global sagetex_pkg sagetex-3.3
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%global sagetex_pkg sagetex-3.4
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%global Sphinx_pkg Sphinx-1.8.5
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%global singular_pkg singular-4.1.1p2
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%if %{with bundled_thebe}
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@ -68,7 +64,7 @@
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%global thebe_pkg thebe-%{thebe_ver}
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%endif
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%if %{with bundled_threejs}
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%global threejs_ver r105
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%global threejs_ver r110
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%global threejs_pkg threejs-%{threejs_ver}
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%endif
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%if %{with bundled_widgetsnbextension}
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@ -77,7 +73,7 @@
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%endif
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# Spkg equivalents of required rpms; we pretend they are installed as spkgs.
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%global SAGE_REQUIRED_PKGS 4ti2-1.6.9 bliss-0.73 cbc-2.10.3 CoCoALib-0.99601 coxeter3-1.1 cryptominisat-5.6.8 database_cremona_ellcurve-%{cremona_ver} gap_packages-4.10.2 gmp-6.1.2 libsirocco-2.0 lrslib-070 mcqd-1.0 meataxe-1.0 primecount-5.1 qepcad-B.1.72 saclib-2.2.7 surf-1.0.6-gcc6 tdlib-0.9.0
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%global SAGE_REQUIRED_PKGS 4ti2-1.6.9 bliss-0.73 cbc-2.10.4 CoCoALib-0.99650 coxeter3-3.1 cryptominisat-5.6.8 database_cremona_ellcurve-%{cremona_ver} gap_packages-4.10.2 gmp-6.1.2 libsirocco-2.0.2 lrslib-070 mcqd-1.0 meataxe-1.0 primecount-5.3 qepcad-B.1.72 saclib-2.2.7 surf-1.0.6-gcc6 tdlib-0.9.0
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%ifarch %{ix86} x86_64
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%global SAGE_REQUIRED_PKGS %{SAGE_REQUIRED_PKGS} fes-0.2
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@ -94,8 +90,8 @@
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Name: sagemath
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Summary: A free open-source mathematics software system
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Version: 8.9
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Release: 3%{?dist}
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Version: 9.0
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Release: 1%{?dist}
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# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
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# Additionally, every $files section has a comment with the license name
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# before files with that license
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@ -107,8 +103,8 @@ Source2: gprc.expect
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# Follow maxima's ExclusiveArch
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ExclusiveArch: aarch64 %{arm} %{ix86} x86_64 ppc sparcv9
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# Fix ecm interact() command
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Patch0: %{name}-ecm.patch
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# Fix stray escapes in python strings
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Patch0: %{name}-escape.patch
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# Fix a "random" bit chooser that always chooses 0
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Patch1: %{name}-random.patch
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@ -122,7 +118,7 @@ Patch3: %{name}-extensions.patch
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# helper to:
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# o respect a DESTDIR environment variable
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# o avoid double '//' in pathnames, what can confused debugedit & co
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# o avoid double '//' in pathnames, which can confuse debugedit & co
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# o minor change to help in incremental builds by avoiding rebuilding
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# files
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# o do not assume there is an installed sagemath
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@ -131,92 +127,83 @@ Patch4: %{name}-rpmbuild.patch
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# build documentation in buildroot environment
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Patch5: %{name}-sagedoc.patch
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# sage notebook rpm and system environment adjustments
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Patch6: %{name}-sagenb.patch
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# do not attempt to create state files in system directories
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Patch7: %{name}-readonly.patch
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Patch6: %{name}-readonly.patch
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# work with all maxima-runtime lisp backend packages
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Patch8: %{name}-maxima.patch
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Patch7: %{name}-maxima.patch
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# execute 4ti2 programs in $PATH not in $SAGE_ROOT/local/bin
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Patch9: %{name}-4ti2.patch
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Patch8: %{name}-4ti2.patch
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# use jmol itself to export preview images
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# FIXME besides not using X and told so, fails if DISPLAY is not set
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Patch10: %{name}-jmol.patch
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Patch9: %{name}-jmol.patch
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# tell the user how to install the large Cremona database
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# add a missing commit() that causes large database construction to fail
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Patch11: %{name}-cremona.patch
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Patch10: %{name}-cremona.patch
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# adapt to python 3 and cython running in python 3 mode
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Patch12: %{name}-python3.patch
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Patch11: %{name}-python3.patch
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# correct path to the nauty geng program
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Patch13: %{name}-nauty.patch
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Patch12: %{name}-nauty.patch
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# remove the buildroot path from Cython output
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Patch14: %{name}-buildroot.patch
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Patch13: %{name}-buildroot.patch
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# update c++ standard to fix FTBFS
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Patch15: %{name}-lcalc.patch
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Patch14: %{name}-lcalc.patch
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# avoid assertion in coin backend
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Patch16: %{name}-cbc.patch
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Patch15: %{name}-cbc.patch
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# Use system gap directories
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Patch17: %{name}-libgap.patch
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Patch16: %{name}-libgap.patch
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# Build fes
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Patch18: %{name}-fes-build.patch
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Patch17: %{name}-fes-build.patch
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# Disable fes
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Patch19: %{name}-fes.patch
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Patch18: %{name}-fes.patch
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# Side effect of using distro packages
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# https://bugzilla.redhat.com/show_bug.cgi?id=974769
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Patch20: %{name}-sympy.patch
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Patch19: %{name}-sympy.patch
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# Correct unable to start QEPCAD within sage
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# https://bugzilla.redhat.com/show_bug.cgi?id=1243590
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Patch21: %{name}-qepcad.patch
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Patch20: %{name}-qepcad.patch
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# Correct path to arb headers
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Patch22: %{name}-arb.patch
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Patch21: %{name}-arb.patch
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# Add missing include paths
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Patch23: %{name}-includes.patch
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Patch22: %{name}-includes.patch
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# Use openblas
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Patch24: %{name}-openblas.patch
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Patch23: %{name}-openblas.patch
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# Fix paths to latte-integrale binaries
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Patch25: %{name}-latte.patch
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Patch24: %{name}-latte.patch
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# Upstream fixes for random SIGFPEs due to ecl messing with the fp state
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Patch26: %{name}-sigfpe.patch
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Patch25: %{name}-sigfpe.patch
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# Add some missing #includes and types in the rubiks code
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Patch27: %{name}-rubiks.patch
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Patch26: %{name}-rubiks.patch
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# Fix an indentation error in sagetex
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Patch28: %{name}-sagetex.patch
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Patch27: %{name}-sagetex.patch
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# Fix some path settings in the sage environment
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Patch29: %{name}-env.patch
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# Make notebook minimally function until upstream finally removes it
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Patch30: %{name}-sagenb-python3.patch
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# Adapt to primecount 5.x
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Patch31: %{name}-primecount.patch
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Patch28: %{name}-env.patch
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# Adapt to recent tdlib 0.9
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Patch32: %{name}-tdlib.patch
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Patch29: %{name}-tdlib.patch
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# Use local objects.inv for intersphinx since no network on koji builders
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Patch33: %{name}-intersphinx.patch
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Patch30: %{name}-intersphinx.patch
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BuildRequires: 4ti2
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BuildRequires: arb-devel
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@ -275,7 +262,7 @@ BuildRequires: iml-devel
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BuildRequires: jmol
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BuildRequires: jsmath-fonts
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# To have a proper link
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#BuildRequires: jsmol
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BuildRequires: jsmol
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BuildRequires: L-function-devel
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BuildRequires: lapack-devel
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BuildRequires: latte-integrale
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@ -319,10 +306,6 @@ BuildRequires: python3dist(brial)
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BuildRequires: python3dist(cvxopt)
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BuildRequires: python3dist(cython)
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BuildRequires: python3dist(docutils)
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BuildRequires: python3dist(flask-autoindex)
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BuildRequires: python3dist(flask-babel)
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BuildRequires: python3dist(flask-openid)
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BuildRequires: python3dist(flask-silk)
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BuildRequires: python3dist(fpylll)
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BuildRequires: python3dist(future)
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BuildRequires: python3dist(gmpy2)
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@ -340,7 +323,6 @@ BuildRequires: python3dist(networkx)
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BuildRequires: python3dist(notebook)
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%if %{with bundled_ipython}
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BuildRequires: python3dist(path.py)
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BuildRequires: python3dist(pathlib2)
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%endif
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%if %{without bundled_pexpect}
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BuildRequires: python3dist(pexpect)
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@ -359,7 +341,6 @@ BuildRequires: python3dist(pyzmq)
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BuildRequires: python3dist(rpy2)
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BuildRequires: python3dist(scipy)
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BuildRequires: python3dist(scons)
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BuildRequires: python3dist(send2trash)
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BuildRequires: python3dist(setuptools)
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%if %{with bundled_ipython}
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BuildRequires: python3dist(simplegeneric)
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@ -368,7 +349,6 @@ BuildRequires: python3dist(six)
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BuildRequires: python3dist(speaklater)
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BuildRequires: python3dist(sphinx)
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BuildRequires: python3dist(sympy)
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BuildRequires: python3dist(twisted)
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BuildRequires: python3dist(zodb3)
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BuildRequires: qepcad-B
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BuildRequires: R
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@ -378,14 +358,14 @@ BuildRequires: rw-devel
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BuildRequires: sharedmeataxe-devel
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BuildRequires: Singular-devel
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BuildRequires: sirocco-devel
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BuildRequires: stix-math-fonts
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BuildRequires: stix-fonts
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BuildRequires: suitesparse-devel
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BuildRequires: symmetrica-devel
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BuildRequires: sympow
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BuildRequires: tachyon
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BuildRequires: texlive
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BuildRequires: tex(anyfontsize.sty)
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BuildRequires: tex(makecmds.sty)
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BuildRequires: vecmath
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# For _jsdir macro
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BuildRequires: web-assets-devel
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BuildRequires: xorg-x11-fonts-Type1
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@ -394,14 +374,14 @@ BuildRequires: zlib-devel
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BuildRequires: zn_poly-devel
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Requires: hicolor-icon-theme
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Requires: %{name}-core
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Requires: %{name}-data
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Requires: %{name}-core = %{version}-%{release}
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Requires: %{name}-data = %{version}-%{release}
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%if %{with docs}
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Requires: %{name}-doc-en
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Requires: %{name}-doc-en = %{version}-%{release}
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%endif
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Requires: %{name}-notebook
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Requires: %{name}-rubiks
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Requires: %{name}-sagetex
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Requires: %{name}-jupyter = %{version}-%{release}
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Requires: %{name}-rubiks = %{version}-%{release}
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Requires: %{name}-sagetex = %{version}-%{release}
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%if %{with bundled_thebe}
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Provides: bundled(thebe) = %{thebe_ver}
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@ -479,7 +459,6 @@ Requires: python3dist(matplotlib)
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Requires: python3dist(networkx)
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%if %{with bundled_ipython}
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Requires: python3dist(path.py)
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Requires: python3dist(pathlib2)
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%endif
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%if %{without bundled_pexpect}
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Requires: python3dist(pexpect)
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@ -505,8 +484,8 @@ Requires: python3dist(sympy)
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Requires: python3dist(zodb3)
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Requires: qepcad-B
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Requires: Singular
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# Required by widgetsnbextension and thebe; remove when they are unbundled
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Requires: stix-math-fonts
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# Required by thebe; remove when it is unbundled
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Requires: stix-fonts
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Requires: sympow
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Requires: tachyon
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Requires: texlive
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@ -701,17 +680,18 @@ This package contains the Turkish %{name} documentation.
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%endif
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#------------------------------------------------------------------------
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%package notebook
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Summary: The Sage Notebook
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%package jupyter
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Summary: Jupyter integration for sagemath
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Requires: %{name}%{?_isa} = %{version}-%{release}
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Requires: python-jupyter-filesystem
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Requires: python3dist(flask-silk)
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Requires: python3dist(send2trash)
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Requires: vecmath
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%description notebook
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The Sage Notebook is a web-based graphical user interface for
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mathematical software.
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# This can be removed when Fedora 31 reaches EOL
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Obsoletes: sagemath-notebook < 9.0-1
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Provides: sagemath-notebook = %{version}-%{release}
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%description jupyter
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This package contains a Jupyter integration for sagemath, replacing the
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defunct notebook functionality.
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#------------------------------------------------------------------------
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%package rubiks
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@ -835,11 +815,6 @@ pushd build/pkgs/rubiks
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popd
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popd
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pushd build/pkgs/sagenb
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tar jxf ../../../upstream/%{sagenb_pkg}.tar.bz2
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mv %{sagenb_pkg} src
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popd
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pushd build/pkgs/sagetex
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tar zxf ../../../upstream/%{sagetex_pkg}.tar.gz
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mv %{sagetex_pkg} src
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@ -901,14 +876,14 @@ popd
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%patch14
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%patch15
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%patch16
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%patch17
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%if %{with fes}
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%patch18
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%patch17
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%else
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%patch19
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%patch18
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%endif
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%patch19
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%patch20
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%patch21
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%patch22
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@ -920,9 +895,6 @@ popd
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%patch28
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%patch29
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%patch30
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%patch31
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%patch32
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%patch33
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sed -e 's|@@SAGE_ROOT@@|%{SAGE_ROOT}|' \
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-e 's|@@SAGE_DOC@@|%{SAGE_DOC}|' \
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@ -933,19 +905,10 @@ sed -e 's|@@CYSIGNALS@@|%{python3_sitearch}/cysignals|' \
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-e 's|@@BUILDROOT@@|%{buildroot}|' \
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-i src/setup.py
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sed -e "/flask-oldsessions/d" \
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-i build/pkgs/sagenb/src/setup.py
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#------------------------------------------------------------------------
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# some .c files are not (re)generated
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find src/sage \( -name \*.pyx -o -name \*.pxd \) -exec touch {} \+
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# remove bundled jar files before build
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rm build/pkgs/sagenb/src/sagenb/data/sage3d/lib/sage3d.jar
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# remove binary egg
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rm -r build/pkgs/sagenb/src/sagenb.egg-info
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# fix Singular paths
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singver=$(sed 's/.*-\([.[:digit:]]*\).*/\1/' <<< %{singular_pkg})
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sed -e "s,SINGULARPATH=\",&%{_datadir}/singular/LIB:," \
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@ -961,8 +924,8 @@ grep -FrlZ '#!%{_bindir}/env python' | \
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xargs -0 sed -i 's,#!%{_bindir}/env python,#!%{__python3},g'
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grep -FrlZ '#!%{_bindir}/env sage-system-python' | \
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xargs -0 sed -i 's,#!%{_bindir}/env sage-system-python,#!%{__python3},g'
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grep -FrlZ '#!%{_bindir}/env sage-python23' | \
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xargs -0 sed -i 's,#!%{_bindir}/env sage-python23,#!%{__python3},g'
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grep -FrlZ '#!%{_bindir}/env sage-python' | \
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xargs -0 sed -i 's,#!%{_bindir}/env sage-python,#!%{__python3},g'
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grep -FrlZ 'sage-python23' | xargs -0 sed -i 's,sage-python23,python3,g'
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grep -FrlZ '#!%{_bindir}/env' | \
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xargs -0 sed -i 's,#!%{_bindir}/env ,#!%{_bindir}/,'
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@ -1089,10 +1052,6 @@ pushd src
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popd
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#------------------------------------------------------------------------
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pushd build/pkgs/sagenb/src
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%__python3 ./setup.py build
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popd
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pushd build/pkgs/sagetex/src
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%__python3 ./setup.py build
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popd
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@ -1181,22 +1140,6 @@ pushd src
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%endif
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||||
popd
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#------------------------------------------------------------------------
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pushd build/pkgs/sagenb/src
|
||||
rm -f %{buildroot}%{python3_sitearch}/sagenb/data/sage3d/sage3d
|
||||
%py3_install "--install-purelib=%{python3_sitearch}"
|
||||
# jsmol
|
||||
ln -sf %{_jsdir}/jsmol $SAGE_SHARE/jsmol
|
||||
# sage3d
|
||||
rm -f %{buildroot}%{_bindir}/sage3d
|
||||
%if %{with sage3d}
|
||||
ln -sf %{SAGE_LOCAL}/bin/sage3d %{buildroot}%{python3_sitearch}/sagenb/data/sage3d/sage3d
|
||||
%endif
|
||||
ln -sf %{python3_sitearch}/sagenb %{buildroot}%{SAGE_SRC}/sagenb
|
||||
# use system mathjax
|
||||
ln -sf %{_jsdir}/mathjax %{buildroot}%{python3_sitearch}/sagenb/data/mathjax
|
||||
popd
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
%if %{with bundled_pexpect}
|
||||
pushd build/pkgs/pexpect/src
|
||||
|
|
@ -1407,16 +1350,6 @@ EOF
|
|||
#------------------------------------------------------------------------
|
||||
chmod +x %{buildroot}%{_bindir}/sage
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
%if %{with sage3d}
|
||||
cat > %{buildroot}%{SAGE_LOCAL}/bin/sage3d << EOF
|
||||
#!/bin/sh
|
||||
|
||||
java -classpath %{SAGE_SRC}/sage/sagenb/data/sage3d/lib/sage3d.jar:%{_javadir}/j3dcore.jar:%{_javadir}/vecmath.jar:%{_javadir}/j3dutils.jar org.sagemath.sage3d.ObjectViewerApp "\$1"
|
||||
EOF
|
||||
chmod +x %{buildroot}%{SAGE_LOCAL}/bin/sage3d
|
||||
%endif
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
# adjust cython interface:
|
||||
# o install csage headers
|
||||
|
|
@ -1546,13 +1479,6 @@ rm -fr %{buildroot}%{SAGE_DOC}/output/inventory
|
|||
find %{buildroot}%{SAGE_DOC} -type d -name _sources -exec rm -fr {} \+
|
||||
%endif
|
||||
|
||||
# remove .po files
|
||||
rm %{buildroot}%{python3_sitearch}/sagenb/translations/*/LC_MESSAGES/*.po
|
||||
|
||||
%if %{without sage3d}
|
||||
rm -r %{buildroot}%{python3_sitearch}/sagenb/data/sage3d
|
||||
%endif
|
||||
|
||||
# remove build directory in buildroot
|
||||
[ -d %{buildroot}%{SAGE_SRC}/build ] &&
|
||||
rm -r %{buildroot}%{SAGE_SRC}/build
|
||||
|
|
@ -1841,75 +1767,9 @@ rm -fr %{SAGE_LOCAL}/var/lib/sage/installed/database_cremona_ellcurve-%{cremona_
|
|||
%endif
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
%files notebook
|
||||
%files jupyter
|
||||
%{SAGE_ETC}/notebook-ipython
|
||||
# GPLv2+
|
||||
%{SAGE_SRC}/sagenb
|
||||
%dir %{python3_sitearch}/sagenb
|
||||
%{python3_sitearch}/sagenb/*.py*
|
||||
%{python3_sitearch}/sagenb/__pycache__/
|
||||
%{python3_sitearch}/sagenb/data/__pycache__/
|
||||
%{python3_sitearch}/sagenb/testing/__pycache__/
|
||||
%{python3_sitearch}/sagenb-*.egg-info
|
||||
%dir %{python3_sitearch}/sagenb/data
|
||||
# BSD
|
||||
%{python3_sitearch}/sagenb/data/codemirror
|
||||
# MIT
|
||||
%{python3_sitearch}/sagenb/data/graph_editor
|
||||
# ASL 2.0
|
||||
%{python3_sitearch}/sagenb/data/highlight
|
||||
# LGPLv2+
|
||||
%{SAGE_SHARE}/jsmol
|
||||
# (MIT or GPLv2) and (MIT and BSD and GPL)
|
||||
%{python3_sitearch}/sagenb/data/jquery
|
||||
# (MIT or GPLv2) and (MIT and BSD and GPL)
|
||||
%{python3_sitearch}/sagenb/data/jqueryui
|
||||
# Public Domain
|
||||
%{python3_sitearch}/sagenb/data/json
|
||||
# Symbolic link to $_jsdir/mathjax
|
||||
%{python3_sitearch}/sagenb/data/mathjax
|
||||
# Empty (do not run doctests flag file)
|
||||
%{python3_sitearch}/sagenb/data/nodoctest.py*
|
||||
# BSD
|
||||
%{python3_sitearch}/sagenb/data/openid-realselector
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/data/sage
|
||||
%if %{with sage3d}
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/data/sage3d
|
||||
%endif
|
||||
# LGPLv2+
|
||||
%{python3_sitearch}/sagenb/data/tiny_mce
|
||||
# LGPLv2+
|
||||
%{python3_sitearch}/sagenb/data/zorn
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/flask_version
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/interfaces
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/misc
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/notebook
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/simple
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagenb/storage
|
||||
# GPLv2+
|
||||
%dir %{python3_sitearch}/sagenb/testing
|
||||
%{python3_sitearch}/sagenb/testing/*.py*
|
||||
%{python3_sitearch}/sagenb/testing/tests
|
||||
# ASL 2.0
|
||||
%{python3_sitearch}/sagenb/testing/selenium
|
||||
# GPLv2+
|
||||
%dir %{python3_sitearch}/sagenb/translations
|
||||
%lang(cs_CZ) %{python3_sitearch}/sagenb/translations/cs_CZ
|
||||
%lang(de_AT) %{python3_sitearch}/sagenb/translations/de_AT
|
||||
%lang(de_AT) %{python3_sitearch}/sagenb/translations/en_US
|
||||
%lang(de_AT) %{python3_sitearch}/sagenb/translations/es_ES
|
||||
%lang(de_AT) %{python3_sitearch}/sagenb/translations/fr_FR
|
||||
%lang(pt_BR) %{python3_sitearch}/sagenb/translations/pt_BR
|
||||
%lang(ru_RU) %{python3_sitearch}/sagenb/translations/ru_RU
|
||||
%lang(uk_UA) %{python3_sitearch}/sagenb/translations/uk_UA
|
||||
%if %{with bundled_widgetsnbextension}
|
||||
%config(noreplace) %{_sysconfdir}/jupyter/nbconfig/notebook.d/*.json
|
||||
%{_datadir}/jupyter/nbextensions/*
|
||||
|
|
@ -1939,6 +1799,16 @@ rm -fr %{SAGE_LOCAL}/var/lib/sage/installed/database_cremona_ellcurve-%{cremona_
|
|||
|
||||
########################################################################
|
||||
%changelog
|
||||
* Fri Feb 28 2020 Jerry James <loganjerry@gmail.com> - 9.0-1
|
||||
- Version 9.0 (bz 1756780, 1770880)
|
||||
- Drop upstreamed -ecm and -primecount patches
|
||||
- Add -escape patch
|
||||
- The old notebook (sagenb) is no longer shipped, so drop the -sagenb and
|
||||
-sagenb-python3 patches, the -notebook subpackage, and some BRs
|
||||
- New -jupyter subpackage
|
||||
- Add suitesparse BR
|
||||
- Drop pathlib2 BR (bz 1797116)
|
||||
|
||||
* Thu Jan 30 2020 Fedora Release Engineering <releng@fedoraproject.org> - 8.9-3
|
||||
- Rebuilt for https://fedoraproject.org/wiki/Fedora_32_Mass_Rebuild
|
||||
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue