diff --git a/.gitignore b/.gitignore index 1590f75..e4b18c8 100644 --- a/.gitignore +++ b/.gitignore @@ -1,2 +1,3 @@ /sage-5.8.tar /sage-5.9.tar +/sage-5.10.tar diff --git a/sagemath-4ti2.patch b/sagemath-4ti2.patch index b3e95ab..7d0a5dd 100644 --- a/sagemath-4ti2.patch +++ b/sagemath-4ti2.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/sandpiles/sandpile.py.orig sage-5.9/spkg/build/sage-5.9/sage/sandpiles/sandpile.py ---- sage-5.9/spkg/build/sage-5.9/sage/sandpiles/sandpile.py.orig 2013-05-06 13:50:14.882749079 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/sandpiles/sandpile.py 2013-05-06 13:50:34.526749831 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/sandpiles/sandpile.py.orig sage-5.10/spkg/build/sage-5.10/sage/sandpiles/sandpile.py +--- sage-5.10/spkg/build/sage-5.10/sage/sandpiles/sandpile.py.orig 2013-05-06 13:50:14.882749079 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/sandpiles/sandpile.py 2013-05-06 13:50:34.526749831 -0300 @@ -24,8 +24,6 @@ packages. An alternative is to install following variable to the correct path. """ diff --git a/sagemath-cbc.patch b/sagemath-cbc.patch index 27b6357..af5dcef 100644 --- a/sagemath-cbc.patch +++ b/sagemath-cbc.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 14:18:02.386812933 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 14:18:07.352813123 -0300 -@@ -2021,7 +2021,7 @@ if (os.path.isfile(SAGE_INC + "/cplex.h" +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 20:05:39.844079175 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 20:05:59.925079944 -0300 +@@ -2007,7 +2007,7 @@ if (os.path.isfile(SAGE_INC + "/cplex.h" libraries = ["csage", "stdc++", "cplex"]) ) @@ -10,89 +10,3 @@ diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sa ext_modules.append( Extension("sage.numerical.backends.coin_backend", ["sage/numerical/backends/coin_backend.pyx"], -diff -up sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/coin_backend.pxd.orig sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/coin_backend.pxd ---- sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/coin_backend.pxd.orig 2013-05-06 14:18:23.609813746 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/coin_backend.pxd 2013-05-06 14:19:37.702816583 -0300 -@@ -22,23 +22,23 @@ from libcpp cimport bool - cdef extern from *: - ctypedef double* const_double_ptr "const double*" - --cdef extern from "../../local/include/coin/CbcStrategy.hpp": -+cdef extern from "coin/CbcStrategy.hpp": - cdef cppclass CbcStrategy: - pass - cdef cppclass CbcStrategyDefault(CbcStrategy): - CbcStrategyDefault() - --cdef extern from "../../local/include/coin/CoinPackedVectorBase.hpp": -+cdef extern from "coin/CoinPackedVectorBase.hpp": - cdef cppclass CoinPackedVectorBase: - pass - --cdef extern from "../../local/include/coin/CoinPackedVector.hpp": -+cdef extern from "coin/CoinPackedVector.hpp": - cdef cppclass CoinPackedVector(CoinPackedVectorBase): - void insert(float, float) - CoinPackedVector *new_CoinPackedVector "new CoinPackedVector" () - void del_CoinPackedVector "delete" (CoinPackedVector *) - --cdef extern from "../../local/include/coin/CoinShallowPackedVector.hpp": -+cdef extern from "coin/CoinShallowPackedVector.hpp": - cdef cppclass CoinShallowPackedVector: - void insert(float, float) - int * getIndices () -@@ -47,7 +47,7 @@ cdef extern from "../../local/include/co - CoinShallowPackedVector *new_CoinShallowPackedVector "new CoinShallowPackedVector" () - void del_CoinShallowPackedVector "delete" (CoinShallowPackedVector *) - --cdef extern from "../../local/include/coin/CoinPackedMatrix.hpp": -+cdef extern from "coin/CoinPackedMatrix.hpp": - cdef cppclass CoinPackedMatrix: - void setDimensions(int, int) - void appendRow(CoinPackedVector) -@@ -55,7 +55,7 @@ cdef extern from "../../local/include/co - CoinPackedMatrix *new_CoinPackedMatrix "new CoinPackedMatrix" (bool, double, double) - void del_CoinPackedMatrix "delete" (CoinPackedMatrix *) - --cdef extern from "../../local/include/coin/CoinMessageHandler.hpp": -+cdef extern from "coin/CoinMessageHandler.hpp": - cdef cppclass CoinMessageHandler: - void setLogLevel (int) - int LogLevel () -@@ -63,11 +63,11 @@ cdef extern from "../../local/include/co - void del_CoinMessageHandler "delete" (CoinMessageHandler *) - - --cdef extern from "../../local/include/coin/OsiSolverParameters.hpp": -+cdef extern from "coin/OsiSolverParameters.hpp": - cdef enum OsiIntParam: - OsiMaxNumIteration = 0, OsiMaxNumIterationHotStart, OsiNameDiscipline, OsiLastIntParam - --cdef extern from "../../local/include/coin/OsiSolverInterface.hpp": -+cdef extern from "coin/OsiSolverInterface.hpp": - - cdef cppclass OsiSolverInterface: - -@@ -130,7 +130,7 @@ cdef extern from "../../local/include/co - # miscellaneous - double getInfinity() - --cdef extern from "../../local/include/coin/CbcModel.hpp": -+cdef extern from "coin/CbcModel.hpp": - cdef cppclass CbcModel: - # default constructor - CbcModel() -@@ -160,11 +160,11 @@ cdef extern from "../../local/include/co - CbcModel *new_CbcModel "new CbcModel" () - void del_CbcModel "delete" (CbcModel *) - --cdef extern from "../../local/include/coin/ClpSimplex.hpp": -+cdef extern from "coin/ClpSimplex.hpp": - cdef cppclass ClpSimplex: - void setNumberThreads(int) - --cdef extern from "../../local/include/coin/OsiClpSolverInterface.hpp": -+cdef extern from "coin/OsiClpSolverInterface.hpp": - - cdef cppclass OsiClpSolverInterface(OsiSolverInterface): - diff --git a/sagemath-cremona.patch b/sagemath-cremona.patch index 3b8f19d..5e9220e 100644 --- a/sagemath-cremona.patch +++ b/sagemath-cremona.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/databases/cremona.py.orig sage-5.9/spkg/build/sage-5.9/sage/databases/cremona.py ---- sage-5.9/spkg/build/sage-5.9/sage/databases/cremona.py.orig 2013-02-22 17:33:50.579875129 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/databases/cremona.py 2013-02-22 17:34:05.051875683 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/databases/cremona.py.orig sage-5.10/spkg/build/sage-5.10/sage/databases/cremona.py +--- sage-5.10/spkg/build/sage-5.10/sage/databases/cremona.py.orig 2013-02-22 17:33:50.579875129 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/databases/cremona.py 2013-02-22 17:34:05.051875683 -0300 @@ -889,14 +889,9 @@ class MiniCremonaDatabase(SQLDatabase): if N < self.largest_conductor(): message = "There is no elliptic curve with label " + label \ diff --git a/sagemath-cryptominisat.patch b/sagemath-cryptominisat.patch index 78f5c61..829ee6f 100644 --- a/sagemath-cryptominisat.patch +++ b/sagemath-cryptominisat.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 16:47:00.734155214 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 16:47:19.820155945 -0300 -@@ -2031,7 +2031,7 @@ if is_package_installed('cbc'): +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 20:09:16.498087472 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 20:09:30.624088013 -0300 +@@ -2017,7 +2017,7 @@ if 1: ) diff --git a/sagemath-ecl-unicode.patch b/sagemath-ecl-unicode.patch index 0d7d6b8..a7c8fc2 100644 --- a/sagemath-ecl-unicode.patch +++ b/sagemath-ecl-unicode.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pxd.orig sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pxd ---- sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pxd.orig 2013-03-19 16:11:17.358705144 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pxd 2013-03-19 16:11:27.719705541 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pxd.orig sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pxd +--- sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pxd.orig 2013-03-19 16:11:17.358705144 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pxd 2013-03-19 16:11:27.719705541 -0300 @@ -133,6 +133,7 @@ cdef extern from "ecl/ecl.h": cl_object ecl_read_from_cstring_safe(char *s, cl_object err) cl_object cl_write_to_string(cl_narg narg, cl_object o) @@ -9,9 +9,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pxd.orig sage-5.9/spkg/build # S-expr evaluation and function calls -diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pyx.orig sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pyx ---- sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pyx.orig 2013-03-19 16:11:07.489704766 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/ecl.pyx 2013-03-19 16:11:27.719705541 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pyx.orig sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pyx +--- sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pyx.orig 2013-03-19 16:11:07.489704766 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/ecl.pyx 2013-03-19 16:11:27.719705541 -0300 @@ -238,17 +238,19 @@ cdef cl_object ecl_safe_eval(cl_object f ... RuntimeError: ECL says: Console interrupt. diff --git a/sagemath-extensions.patch b/sagemath-extensions.patch index 13d446f..6ff4114 100644 --- a/sagemath-extensions.patch +++ b/sagemath-extensions.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 12:26:26.802556536 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 12:26:39.837557035 -0300 -@@ -1975,7 +1975,8 @@ ext_modules = [ +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 19:41:05.473022716 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 19:41:22.814023380 -0300 +@@ -1961,7 +1961,8 @@ ext_modules = [ # These extensions are to be compiled only if the # corresponding packages have been installed diff --git a/sagemath-fes.patch b/sagemath-fes.patch index e13644b..fc4f1a4 100644 --- a/sagemath-fes.patch +++ b/sagemath-fes.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-03-19 18:13:55.457986912 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-03-19 18:14:03.785987230 -0300 -@@ -1988,7 +1988,7 @@ ext_modules = [ +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 20:07:59.033084505 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 20:08:09.815084918 -0300 +@@ -1966,7 +1966,7 @@ ext_modules = [ def is_package_installed(name): return False diff --git a/sagemath-flask.patch b/sagemath-flask.patch new file mode 100644 index 0000000..14992a8 --- /dev/null +++ b/sagemath-flask.patch @@ -0,0 +1,32 @@ +diff -up sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py.orig sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py +--- sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py.orig 2013-07-30 17:57:58.985060198 -0300 ++++ sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py 2013-07-30 17:58:31.958061460 -0300 +@@ -55,28 +55,6 @@ class SageNBFlask(Flask): + endpoint='/static'+base_url, + view_func=partial(self.static_view_func, root_path)) + +- def save_session(self, session, response): +- """ +- This method needs to stay in sync with the version in Flask. +- The only modification made to it is the ``httponly=False`` +- passed to ``save_cookie``. +- +- Saves the session if it needs updates. For the default +- implementation, check :meth:`open_session`. +- +- :param session: the session to be saved (a +- :class:`~werkzeug.contrib.securecookie.SecureCookie` +- object) +- :param response: an instance of :attr:`response_class` +- """ +- expires = domain = None +- if session.permanent: +- expires = datetime.utcnow() + self.permanent_session_lifetime +- if self.config['SERVER_NAME'] is not None: +- domain = '.' + self.config['SERVER_NAME'] +- session.save_cookie(response, self.session_cookie_name, +- expires=expires, httponly=False, domain=domain) +- + def message(self, msg, cont='/', username=None, **kwds): + """Returns an error message to the user.""" + template_dict = {'msg': msg, 'cont': cont, 'username': username} diff --git a/sagemath-fplll.patch b/sagemath-fplll.patch index c67be9b..70a32c2 100644 --- a/sagemath-fplll.patch +++ b/sagemath-fplll.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 13:59:12.394769662 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 13:59:23.359770082 -0300 -@@ -647,6 +647,7 @@ ext_modules = [ +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 19:57:20.544060055 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 19:57:33.521060552 -0300 +@@ -638,6 +638,7 @@ ext_modules = [ libraries = ['gmp', 'mpfr', 'stdc++', 'fplll'], language="c++", include_dirs = [SAGE_INC + '/fplll'], @@ -9,9 +9,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sa depends = [SAGE_INC + "/fplll/fplll.h"]), Extension('sage.libs.linbox.linbox', -diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/fplll/fplll.pxi.orig sage-5.9/spkg/build/sage-5.9/sage/libs/fplll/fplll.pxi ---- sage-5.9/spkg/build/sage-5.9/sage/libs/fplll/fplll.pxi.orig 2013-05-06 13:59:47.144770993 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/fplll/fplll.pxi 2013-05-06 14:06:27.254786314 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/fplll/fplll.pxi.orig sage-5.10/spkg/build/sage-5.10/sage/libs/fplll/fplll.pxi +--- sage-5.10/spkg/build/sage-5.10/sage/libs/fplll/fplll.pxi.orig 2013-07-29 19:57:29.779060409 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/fplll/fplll.pxi 2013-07-29 19:57:33.523060552 -0300 @@ -10,22 +10,22 @@ cdef extern from "fplll/fplll.h": # diff --git a/sagemath-gap-hap.patch b/sagemath-gap-hap.patch index e19864f..bd104ce 100644 --- a/sagemath-gap-hap.patch +++ b/sagemath-gap-hap.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/groups/perm_gps/permgroup.py.orig sage-5.9/spkg/build/sage-5.9/sage/groups/perm_gps/permgroup.py ---- sage-5.9/spkg/build/sage-5.9/sage/groups/perm_gps/permgroup.py.orig 2013-03-19 16:22:36.592731155 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/groups/perm_gps/permgroup.py 2013-03-19 16:22:58.320731987 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/groups/perm_gps/permgroup.py.orig sage-5.10/spkg/build/sage-5.10/sage/groups/perm_gps/permgroup.py +--- sage-5.10/spkg/build/sage-5.10/sage/groups/perm_gps/permgroup.py.orig 2013-07-29 20:03:19.785073812 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/groups/perm_gps/permgroup.py 2013-07-29 20:03:29.426074181 -0300 @@ -180,8 +180,7 @@ def hap_decorator(f): """ @wraps(f) @@ -11,7 +11,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/groups/perm_gps/permgroup.py.orig sag load_hap() from sage.rings.arith import is_prime if not (p == 0 or is_prime(p)): -@@ -3628,8 +3627,7 @@ class PermutationGroup_generic(group.Gro +@@ -3730,8 +3729,7 @@ class PermutationGroup_generic(group.Gro - David Joyner and Graham Ellis """ diff --git a/sagemath-gmp.patch b/sagemath-gmp.patch index b50983b..8767f9c 100644 --- a/sagemath-gmp.patch +++ b/sagemath-gmp.patch @@ -1,5 +1,5 @@ ---- sage-5.9/spkg/build/sage-5.9/c_lib/src/memory.c.orig 2012-07-10 11:46:54.516595967 -0400 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/src/memory.c 2012-07-10 11:47:12.688596755 -0400 +--- sage-5.10/spkg/build/sage-5.10/c_lib/src/memory.c.orig 2012-07-10 11:46:54.516595967 -0400 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/src/memory.c 2012-07-10 11:47:12.688596755 -0400 @@ -17,7 +17,7 @@ AUTHORS: * http://www.gnu.org/licenses/ ****************************************************************************/ diff --git a/sagemath-jmol.patch b/sagemath-jmol.patch index ff8b31d..c993d1a 100644 --- a/sagemath-jmol.patch +++ b/sagemath-jmol.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/jmoldata.py.orig sage-5.9/spkg/build/sage-5.9/sage/interfaces/jmoldata.py ---- sage-5.9/spkg/build/sage-5.9/sage/interfaces/jmoldata.py.orig 2012-11-10 12:03:07.742817945 -0200 -+++ sage-5.9/spkg/build/sage-5.9/sage/interfaces/jmoldata.py 2012-11-10 12:03:34.499818970 -0200 +diff -up sage-5.10/spkg/build/sage-5.10/sage/interfaces/jmoldata.py.orig sage-5.10/spkg/build/sage-5.10/sage/interfaces/jmoldata.py +--- sage-5.10/spkg/build/sage-5.10/sage/interfaces/jmoldata.py.orig 2012-11-10 12:03:07.742817945 -0200 ++++ sage-5.10/spkg/build/sage-5.10/sage/interfaces/jmoldata.py 2012-11-10 12:03:34.499818970 -0200 @@ -86,7 +86,7 @@ class JmolData(SageObject): sage_makedirs(jmolscratch) scratchout = os.path.join(jmolscratch,"jmolout.txt") diff --git a/sagemath-libgap.patch b/sagemath-libgap.patch index f62685d..5a11e1a 100644 --- a/sagemath-libgap.patch +++ b/sagemath-libgap.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/gap/util.pyx.orig sage-5.9/spkg/build/sage-5.9/sage/libs/gap/util.pyx ---- sage-5.9/spkg/build/sage-5.9/sage/libs/gap/util.pyx.orig 2013-05-06 14:24:03.160826749 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/gap/util.pyx 2013-05-06 14:25:25.806829913 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/gap/util.pyx.orig sage-5.10/spkg/build/sage-5.10/sage/libs/gap/util.pyx +--- sage-5.10/spkg/build/sage-5.10/sage/libs/gap/util.pyx.orig 2013-05-06 14:24:03.160826749 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/gap/util.pyx 2013-05-06 14:25:25.806829913 -0300 @@ -155,18 +155,9 @@ def gap_root(): sage: from sage.libs.gap.util import gap_root diff --git a/sagemath-libmpc.patch b/sagemath-libmpc.patch index 9c1548d..4a61604 100644 --- a/sagemath-libmpc.patch +++ b/sagemath-libmpc.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct.orig sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct ---- sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct.orig 2013-02-23 12:42:08.694809731 -0300 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct 2013-02-23 12:43:00.412811711 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct.orig sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct +--- sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct.orig 2013-02-23 12:42:08.694809731 -0300 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct 2013-02-23 12:43:00.412811711 -0300 @@ -145,7 +145,7 @@ soname = libname + "." + major shlink_flags += [ '-Wl,-Bsymbolic', '-Wl,-soname=%s' % soname ] @@ -10,9 +10,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct.orig sage-5.9/spkg/build/ LIBPATH=['@@libdir@@','@@libdir@@/python$PYV/config/'], SHLIBSUFFIX=shlib_suffix, SHLINKFLAGS=shlink_flags, -diff -up sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c.orig sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c ---- sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c.orig 2013-02-23 12:42:18.286810098 -0300 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c 2013-02-23 12:43:15.062812272 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c.orig sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c +--- sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c.orig 2013-02-23 12:42:18.286810098 -0300 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c 2013-02-23 12:43:15.062812272 -0300 @@ -58,3 +58,49 @@ void init_csage_module() { init_csage(); #endif diff --git a/sagemath-lrcalc.patch b/sagemath-lrcalc.patch index 0cd2a01..0de417c 100644 --- a/sagemath-lrcalc.patch +++ b/sagemath-lrcalc.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 14:14:11.852804105 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 14:14:20.940804453 -0300 -@@ -2056,7 +2056,7 @@ if UNAME[0] == "Darwin" and not UNAME[2] +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 20:04:06.006075582 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 20:04:18.016076042 -0300 +@@ -2042,7 +2042,7 @@ if UNAME[0] == "Darwin" and not UNAME[2] ) diff --git a/sagemath-lrslib.patch b/sagemath-lrslib.patch index 1321c07..715fac4 100644 --- a/sagemath-lrslib.patch +++ b/sagemath-lrslib.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/geometry/polyhedron/base.py.orig sage-5.9/spkg/build/sage-5.9/sage/geometry/polyhedron/base.py ---- sage-5.9/spkg/build/sage-5.9/sage/geometry/polyhedron/base.py.orig 2013-05-06 14:12:21.664799886 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/geometry/polyhedron/base.py 2013-05-06 14:12:28.625800152 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/geometry/polyhedron/base.py.orig sage-5.10/spkg/build/sage-5.10/sage/geometry/polyhedron/base.py +--- sage-5.10/spkg/build/sage-5.10/sage/geometry/polyhedron/base.py.orig 2013-05-06 14:12:21.664799886 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/geometry/polyhedron/base.py 2013-05-06 14:12:28.625800152 -0300 @@ -3281,11 +3281,6 @@ class Polyhedron_base(Element): David Avis's lrs program. diff --git a/sagemath-m4rie.patch b/sagemath-m4rie.patch index e2ca4de..71a285a 100644 --- a/sagemath-m4rie.patch +++ b/sagemath-m4rie.patch @@ -1,5 +1,5 @@ ---- sage-5.9/spkg/build/sage-5.9/sage/libs/m4rie.pxd.orig 2013-05-07 08:12:27.137652862 -0600 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/m4rie.pxd 2013-05-07 11:45:12.067923724 -0600 +--- sage-5.10/spkg/build/sage-5.10/sage/libs/m4rie.pxd.orig 2013-05-07 08:12:27.137652862 -0600 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/m4rie.pxd 2013-05-07 11:45:12.067923724 -0600 @@ -52,9 +52,9 @@ cdef extern from "m4rie/m4rie.h": void mzed_add_elem(mzed_t *a, const_size_t row, const_size_t col, const_int elem) @@ -28,8 +28,8 @@ mzd_slice_t *mzd_slice_init(gf2e *ff, size_t m, size_t n) ---- sage-5.9/spkg/build/sage-5.9/sage/matrix/matrix_mod2e_dense.pyx.orig 2013-05-07 08:12:27.139652859 -0600 -+++ sage-5.9/spkg/build/sage-5.9/sage/matrix/matrix_mod2e_dense.pyx 2013-05-07 11:21:05.095668016 -0600 +--- sage-5.10/spkg/build/sage-5.10/sage/matrix/matrix_mod2e_dense.pyx.orig 2013-05-07 08:12:27.139652859 -0600 ++++ sage-5.10/spkg/build/sage-5.10/sage/matrix/matrix_mod2e_dense.pyx 2013-05-07 11:21:05.095668016 -0600 @@ -561,9 +561,6 @@ cdef class Matrix_mod2e_dense(matrix_den if self._ncols != right._nrows: raise ArithmeticError("left ncols must match right nrows") diff --git a/sagemath-maxima.patch b/sagemath-maxima.patch index 95149d1..3918aa9 100644 --- a/sagemath-maxima.patch +++ b/sagemath-maxima.patch @@ -1,16 +1,16 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima.py.orig sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima.py ---- sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima.py.orig 2012-08-04 13:21:54.100575138 -0400 -+++ sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima.py 2012-08-04 13:22:15.580575956 -0400 +diff -up sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima.py.orig sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima.py +--- sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima.py.orig 2013-07-29 19:54:04.395052544 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima.py 2013-07-29 19:55:18.259055373 -0300 @@ -544,7 +544,7 @@ class Maxima(MaximaAbstract, Expect): Expect.__init__(self, name = 'maxima', prompt = '\(\%i[0-9]+\)', -- command = 'maxima-noreadline --userdir="%s" -p "%s"'%(SAGE_MAXIMA_DIR,STARTUP), +- command = 'maxima --userdir="%s" -p "%s"'%(SAGE_MAXIMA_DIR,STARTUP), + command = 'maxima --disable-readline --userdir="%s" -p "%s"'%(SAGE_MAXIMA_DIR,STARTUP), maxread = 10000, script_subdirectory = script_subdirectory, restart_on_ctrlc = False, -@@ -588,7 +588,8 @@ class Maxima(MaximaAbstract, Expect): +@@ -591,7 +591,8 @@ class Maxima(MaximaAbstract, Expect): # Remove limit on the max heapsize (since otherwise it defaults # to 256MB with ECL). @@ -20,9 +20,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima.py.orig sage-5.9/sp self._eval_line('0;') def __reduce__(self): -diff -up sage-5.9/spkg/build/sage_scripts-5.7/sage-maxima.lisp.orig sage-5.9/spkg/build/sage_scripts-5.7/sage-maxima.lisp ---- sage-5.9/spkg/build/sage_scripts-5.9/sage-maxima.lisp.orig 2012-08-04 13:22:07.842575668 -0400 -+++ sage-5.9/spkg/build/sage_scripts-5.9/sage-maxima.lisp 2012-08-04 13:22:15.580575956 -0400 +diff -up sage-5.10/spkg/build/sage_scripts-5.10/sage-maxima.lisp.orig sage-5.10/spkg/build/sage_scripts-5.10/sage-maxima.lisp +--- sage-5.10/spkg/build/sage_scripts-5.10/sage-maxima.lisp.orig 2013-07-29 19:54:04.402052544 -0300 ++++ sage-5.10/spkg/build/sage_scripts-5.10/sage-maxima.lisp 2013-07-29 19:55:33.867055970 -0300 @@ -3,4 +3,8 @@ ;(setf *general-display-prefix* "") diff --git a/sagemath-maxima.system.patch b/sagemath-maxima.system.patch index d804bea..62683db 100644 --- a/sagemath-maxima.system.patch +++ b/sagemath-maxima.system.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima_lib.py.orig sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima_lib.py ---- sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima_lib.py.orig 2012-12-29 15:42:54.811218546 -0200 -+++ sage-5.9/spkg/build/sage-5.9/sage/interfaces/maxima_lib.py 2012-12-29 15:43:06.739219003 -0200 +diff -up sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima_lib.py.orig sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima_lib.py +--- sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima_lib.py.orig 2012-12-29 15:42:54.811218546 -0200 ++++ sage-5.10/spkg/build/sage-5.10/sage/interfaces/maxima_lib.py 2012-12-29 15:43:06.739219003 -0200 @@ -77,7 +77,7 @@ from maxima_abstract import (MaximaAbstr ## We begin here by initializing Maxima in library mode ## i.e. loading it into ECL diff --git a/sagemath-nauty.patch b/sagemath-nauty.patch index e9db3d5..f47d3e8 100644 --- a/sagemath-nauty.patch +++ b/sagemath-nauty.patch @@ -1,13 +1,12 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/graphs/graph_generators.py.orig sage-5.9/spkg/build/sage-5.9/sage/graphs/graph_generators.py ---- sage-5.9/spkg/build/sage-5.9/sage/graphs/graph_generators.py.orig 2013-05-06 14:13:14.875801924 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/graphs/graph_generators.py 2013-05-06 14:13:24.820802304 -0300 -@@ -772,8 +772,7 @@ class GraphGenerators(): +diff -up sage-5.10/spkg/build/sage-5.10/sage/graphs/graph_generators.py.orig sage-5.10/spkg/build/sage-5.10/sage/graphs/graph_generators.py +--- sage-5.10/spkg/build/sage-5.10/sage/graphs/graph_generators.py.orig 2013-07-29 20:02:33.894072055 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/graphs/graph_generators.py 2013-07-29 20:02:42.421072381 -0300 +@@ -774,7 +774,7 @@ class GraphGenerators(): """ import subprocess from sage.misc.package import is_package_installed - if not is_package_installed("nauty"): -- raise TypeError, "the optional nauty package is not installed" -+ raise TypeError, "the optional nauty package is not installed" ++ if 1: + raise TypeError("the optional nauty package is not installed") sp = subprocess.Popen("nauty-geng {0}".format(options), shell=True, stdin=subprocess.PIPE, stdout=subprocess.PIPE, - stderr=subprocess.PIPE, close_fds=True) diff --git a/sagemath-nolibgap.patch b/sagemath-nolibgap.patch index d6b87b2..9a69650 100644 --- a/sagemath-nolibgap.patch +++ b/sagemath-nolibgap.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 14:26:48.178833068 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 14:28:09.378836177 -0300 -@@ -485,8 +485,8 @@ ext_modules = [ +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 20:07:17.633082920 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 20:07:28.577083339 -0300 +@@ -487,8 +487,8 @@ ext_modules = [ Extension('sage.groups.old', sources = ['sage/groups/old.pyx']), @@ -12,7 +12,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sa Extension('sage.groups.perm_gps.permgroup_element', sources = ['sage/groups/perm_gps/permgroup_element.pyx']), -@@ -780,25 +780,25 @@ ext_modules = [ +@@ -771,25 +771,25 @@ ext_modules = [ ## ################################ diff --git a/sagemath-nopari2.6.patch b/sagemath-nopari2.6.patch index 3001eec..6b45cc8 100644 --- a/sagemath-nopari2.6.patch +++ b/sagemath-nopari2.6.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/pari/decl.pxi.orig sage-5.9/spkg/build/sage-5.9/sage/libs/pari/decl.pxi ---- sage-5.9/spkg/build/sage-5.9/sage/libs/pari/decl.pxi.orig 2013-03-19 17:20:25.960864009 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/pari/decl.pxi 2013-03-19 17:20:33.246864288 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/pari/decl.pxi.orig sage-5.10/spkg/build/sage-5.10/sage/libs/pari/decl.pxi +--- sage-5.10/spkg/build/sage-5.10/sage/libs/pari/decl.pxi.orig 2013-07-29 20:08:46.678086330 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/pari/decl.pxi 2013-07-29 20:08:56.965086724 -0300 @@ -595,7 +595,6 @@ cdef extern from 'pari/pari.h': GEN polredabs0(GEN x, long flag) GEN polredabs2(GEN x) @@ -9,10 +9,10 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/pari/decl.pxi.orig sage-5.9/spkg GEN qflll0(GEN x, long flag) GEN qflllgram0(GEN x, long flag) GEN smallpolred(GEN x) -diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx.orig sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx ---- sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx.orig 2013-03-19 17:20:55.992865159 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx 2013-03-19 17:21:02.118865393 -0300 -@@ -8011,10 +8011,6 @@ cdef class gen(sage.structure.element.Ri +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx.orig sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx +--- sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx.orig 2013-07-29 20:08:37.060085961 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx 2013-07-29 20:08:56.971086724 -0300 +@@ -8029,10 +8029,6 @@ cdef class gen(sage.structure.element.Ri sig_on() return self.new_gen(polredabs0(self.g, flag)) diff --git a/sagemath-ntl6.patch b/sagemath-ntl6.patch index 1f3344e..130b71d 100644 --- a/sagemath-ntl6.patch +++ b/sagemath-ntl6.patch @@ -1,5 +1,6 @@ ---- sage-5.9/spkg/build/sage-5.9/c_lib/include/ntl_wrap.h.orig 2010-06-28 10:37:05.000000000 -0600 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/include/ntl_wrap.h 2013-05-03 15:42:32.931073654 -0600 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h.orig sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h +--- sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h.orig 2013-07-29 19:40:07.189020485 -0300 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h 2013-07-29 19:40:11.831020662 -0300 @@ -40,91 +40,92 @@ EXTERN void setup_NTL_error_callback(voi //////// ZZ ////////// @@ -450,8 +451,9 @@ -EXTERN void mat_GF2_setitem(struct mat_GF2* x, int i, int j, const struct GF2* z); +EXTERN void mat_GF2_setitem(mat_GF2* x, int i, int j, const GF2* z); ---- sage-5.9/spkg/build/sage-5.9/c_lib/src/ntl_wrap.cpp.orig 2013-01-21 14:18:15.000000000 -0700 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/src/ntl_wrap.cpp 2013-05-03 16:05:09.640847922 -0600 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp.orig sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp +--- sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp.orig 2013-07-29 19:40:07.197020485 -0300 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp 2013-07-29 19:40:11.834020662 -0300 @@ -29,7 +29,7 @@ int ZZ_to_int(const ZZ* x) /* Returns a *new* ZZ object. @@ -1348,9 +1350,10 @@ { //int j; cpn.restore(); ---- sage-5.9/spkg/build/sage-5.9/sage/libs/ntl/decl.pxi.orig 2010-06-28 10:37:01.000000000 -0600 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/ntl/decl.pxi 2013-05-07 09:38:36.134950663 -0600 -@@ -23,7 +23,7 @@ from sage.libs.ntl.ntl_ZZ_pEX_decl cimpo +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/ntl/decl.pxi.orig sage-5.10/spkg/build/sage-5.10/sage/libs/ntl/decl.pxi +--- sage-5.10/spkg/build/sage-5.10/sage/libs/ntl/decl.pxi.orig 2013-07-29 19:39:08.246018227 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/ntl/decl.pxi 2013-07-29 19:40:11.836020662 -0300 +@@ -22,7 +22,7 @@ from sage.libs.ntl.ntl_ZZ_pEX_decl cimpo cdef extern from "ntl_wrap.h": #### mat_ZZ_c @@ -1359,7 +1362,7 @@ pass # Some boiler-plate -@@ -93,7 +93,7 @@ cdef extern from "ntl_wrap.h": +@@ -92,7 +92,7 @@ cdef extern from "ntl_wrap.h": cdef long mat_ZZ_G_BKZ_RR_U "G_BKZ_RR"(mat_ZZ_c B, mat_ZZ_c U, double delta, long BlockSize, long prune, int check, long verbose) #### GF2_c @@ -1368,7 +1371,7 @@ pass GF2_c* GF2_new "New"() -@@ -119,7 +119,7 @@ cdef extern from "ntl_wrap.h": +@@ -118,7 +118,7 @@ cdef extern from "ntl_wrap.h": #### GF2X_c @@ -1377,7 +1380,7 @@ pass long *GF2XHexOutput_c "(&GF2X::HexOutput)" # work-around for Cython bug -@@ -176,7 +176,7 @@ cdef extern from "ntl_wrap.h": +@@ -175,7 +175,7 @@ cdef extern from "ntl_wrap.h": void GF2X_BuildIrred "BuildIrred" (GF2X_c f, long n) #### GF2XModulus_c @@ -1386,7 +1389,7 @@ pass GF2X_c GF2XModulus_GF2X "GF2X" (GF2XModulus_c m) -@@ -185,7 +185,7 @@ cdef extern from "ntl_wrap.h": +@@ -184,7 +184,7 @@ cdef extern from "ntl_wrap.h": #### GF2EContext_c @@ -1395,7 +1398,7 @@ void (*restore)() GF2EContext_c* GF2EContext_new "New"() -@@ -196,7 +196,7 @@ cdef extern from "ntl_wrap.h": +@@ -195,7 +195,7 @@ cdef extern from "ntl_wrap.h": void GF2EContext_delete "Delete"(GF2EContext_c *mem) #### GF2E_c @@ -1404,7 +1407,7 @@ pass void GF2E_init "GF2E::init"(GF2X_c x) -@@ -231,7 +231,7 @@ cdef extern from "ntl_wrap.h": +@@ -230,7 +230,7 @@ cdef extern from "ntl_wrap.h": GF2_c GF2E_trace "trace"(GF2E_c x) #### GF2EX_c @@ -1413,7 +1416,7 @@ pass GF2EX_c* GF2EX_new "New"() -@@ -250,7 +250,7 @@ cdef extern from "ntl_wrap.h": +@@ -249,7 +249,7 @@ cdef extern from "ntl_wrap.h": int GF2EX_IsZero "IsZero"(GF2EX_c x) #### vec_GF2E_c @@ -1422,7 +1425,7 @@ pass vec_GF2E_c* vec_GF2E_new "New"() -@@ -261,7 +261,7 @@ cdef extern from "ntl_wrap.h": +@@ -260,7 +260,7 @@ cdef extern from "ntl_wrap.h": object vec_GF2E_to_PyString "_to_PyString"(vec_GF2E_c *x) #### mat_GF2E_c @@ -1431,7 +1434,7 @@ void (*SetDims)(long nrows, long ncols) long (*NumRows)() long (*NumCols)() -@@ -300,7 +300,7 @@ cdef extern from "ntl_wrap.h": +@@ -299,7 +299,7 @@ cdef extern from "ntl_wrap.h": void mat_GF2E_conv_vec_GF2E(mat_GF2E_c out, vec_GF2E_c inp) #### vec_GF2_c @@ -1440,7 +1443,7 @@ pass vec_GF2_c* vec_GF2_new "New"() -@@ -312,7 +312,7 @@ cdef extern from "ntl_wrap.h": +@@ -311,7 +311,7 @@ cdef extern from "ntl_wrap.h": #### mat_GF2_c diff --git a/sagemath-pari.patch b/sagemath-pari.patch index 3d9d54b..bb38b96 100644 --- a/sagemath-pari.patch +++ b/sagemath-pari.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/gp.py.orig sage-5.9/spkg/build/sage-5.9/sage/interfaces/gp.py ---- sage-5.9/spkg/build/sage-5.9/sage/interfaces/gp.py.orig 2013-03-28 16:19:35.000000000 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/interfaces/gp.py 2013-05-06 17:34:56.021265319 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/interfaces/gp.py.orig sage-5.10/spkg/build/sage-5.10/sage/interfaces/gp.py +--- sage-5.10/spkg/build/sage-5.10/sage/interfaces/gp.py.orig 2013-07-29 19:56:27.093058008 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/interfaces/gp.py 2013-07-29 19:56:38.015058427 -0300 @@ -977,11 +977,11 @@ def is_GpElement(x): """ return isinstance(x, GpElement) @@ -16,10 +16,10 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/gp.py.orig sage-5.9/spkg/b # An instance gp = Gp(logfile=os.path.join(DOT_SAGE,'gp-expect.log')) # useful for debugging! -diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx.orig sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx ---- sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx.orig 2013-05-06 17:34:09.952263554 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx 2013-05-06 17:34:24.826264124 -0300 -@@ -182,6 +182,10 @@ include '../../ext/stdsage.pxi' +diff -up sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx.orig sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx +--- sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx.orig 2013-07-29 19:56:11.479057411 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/libs/pari/gen.pyx 2013-07-29 19:56:38.025058427 -0300 +@@ -183,6 +183,10 @@ include 'sage/ext/python.pxi' cdef extern from "mpz_pylong.h": cdef int mpz_set_pylong(mpz_t dst, src) except -1 @@ -30,7 +30,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/libs/pari/gen.pyx.orig sage-5.9/spkg/ # Make sure we don't use mpz_t_offset before initializing it by # putting in a value that's likely to provoke a segmentation fault, # rather than silently corrupting memory. -@@ -9218,7 +9222,12 @@ cdef class PariInstance(sage.structure.p +@@ -9240,7 +9244,12 @@ cdef class PariInstance(sage.structure.p # The size here doesn't really matter, because we will allocate # our own stack anyway. We ask PARI not to set up signal handlers. diff --git a/sagemath-png.patch b/sagemath-png.patch index df45518..0d24608 100644 --- a/sagemath-png.patch +++ b/sagemath-png.patch @@ -1,25 +1,25 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 13:47:27.554742671 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 13:47:44.223743310 -0300 -@@ -1023,7 +1023,7 @@ ext_modules = [ +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 19:52:06.543048031 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 19:52:26.005048776 -0300 +@@ -1014,7 +1014,7 @@ ext_modules = [ Extension('sage.matrix.matrix_mod2_dense', sources = ['sage/matrix/matrix_mod2_dense.pyx'], - libraries = ['gmp','m4ri', 'gd', 'png12', 'z'], + libraries = ['gmp','m4ri', 'gd', 'png', 'z'], - extra_compile_args = ['-std=c99'] + m4ri_extra_compile_args, + extra_compile_args = m4ri_extra_compile_args, depends = [SAGE_INC + "/png.h", SAGE_INC + "/m4ri/m4ri.h"]), -@@ -1285,7 +1285,7 @@ ext_modules = [ +@@ -1273,7 +1273,7 @@ ext_modules = [ Extension('sage.modules.vector_mod2_dense', sources = ['sage/modules/vector_mod2_dense.pyx'], - libraries = ['gmp','m4ri', 'png12', 'gd'], + libraries = ['gmp','m4ri', 'png', 'gd'], - extra_compile_args = ['-std=c99'] + m4ri_extra_compile_args, + extra_compile_args = m4ri_extra_compile_args, depends = [SAGE_INC + "/png.h", SAGE_INC + "/m4ri/m4ri.h"]), -@@ -1760,7 +1760,7 @@ ext_modules = [ +@@ -1748,7 +1748,7 @@ ext_modules = [ Extension('sage.rings.polynomial.pbori', sources = ['sage/rings/polynomial/pbori.pyx'], libraries=['polybori-' + polybori_major_version, diff --git a/sagemath-readonly.patch b/sagemath-readonly.patch index 0a6b3e3..29a3477 100644 --- a/sagemath-readonly.patch +++ b/sagemath-readonly.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/all.py.orig sage-5.9/spkg/build/sage-5.9/sage/all.py ---- sage-5.9/spkg/build/sage-5.9/sage/all.py.orig 2013-05-06 13:45:07.053737291 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/all.py 2013-05-06 13:45:35.317738373 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/all.py.orig sage-5.10/spkg/build/sage-5.10/sage/all.py +--- sage-5.10/spkg/build/sage-5.10/sage/all.py.orig 2013-05-06 13:45:07.053737291 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/all.py 2013-05-06 13:45:35.317738373 -0300 @@ -307,11 +307,11 @@ def _write_started_file(): Check that the file exists when Sage is running:: diff --git a/sagemath-rh_bz_961372.patch b/sagemath-rh_bz_961372.patch index 6bd7238..301d426 100644 --- a/sagemath-rh_bz_961372.patch +++ b/sagemath-rh_bz_961372.patch @@ -1,7 +1,7 @@ -diff -up sage-5.9/spkg/build/sage-5.9/sage/ext/cdefs.pxi.orig sage-5.9/spkg/build/sage-5.9/sage/ext/cdefs.pxi ---- sage-5.9/spkg/build/sage-5.9/sage/ext/cdefs.pxi.orig 2013-04-25 10:00:51.000000000 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/ext/cdefs.pxi 2013-05-11 11:30:58.472438774 -0300 -@@ -7,6 +7,9 @@ include "python.pxi" +diff -up sage-5.10/spkg/build/sage-5.10/sage/ext/cdefs.pxi.orig sage-5.10/spkg/build/sage-5.10/sage/ext/cdefs.pxi +--- sage-5.10/spkg/build/sage-5.10/sage/ext/cdefs.pxi.orig 2013-07-29 20:12:52.183095731 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/ext/cdefs.pxi 2013-07-29 20:13:06.111096264 -0300 +@@ -5,6 +5,9 @@ from libc.stdio cimport * from libc.string cimport strlen, strcpy, memset, memcpy diff --git a/sagemath-rpmbuild.patch b/sagemath-rpmbuild.patch index 245790d..a0a75b1 100644 --- a/sagemath-rpmbuild.patch +++ b/sagemath-rpmbuild.patch @@ -1,6 +1,22 @@ -diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sage-5.9/module_list.py ---- sage-5.9/spkg/build/sage-5.9/module_list.py.orig 2013-05-06 16:21:08.750095783 -0300 -+++ sage-5.9/spkg/build/sage-5.9/module_list.py 2013-05-06 16:22:01.411097799 -0300 +diff -up sage-5.10/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig sage-5.10/spkg/build/conway_polynomials-0.4.p0/spkg-install +--- sage-5.10/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig 2013-07-29 19:43:09.049027449 -0300 ++++ sage-5.10/spkg/build/conway_polynomials-0.4.p0/spkg-install 2013-07-29 19:43:39.434028612 -0300 +@@ -2,9 +2,10 @@ + + import os + from sage.all import save +-from sage.misc.misc import SAGE_SHARE ++if 'SAGE_SHARE' not in os.environ: ++ raise RuntimeError("SAGE_SHARE undefined, maybe run `sage -sh`?") + +-install_root = os.path.join(SAGE_SHARE, 'conway_polynomials') ++install_root = os.path.join(os.environ['SAGE_SHARE'], 'conway_polynomials') + + def create_db(): + db = {} +diff -up sage-5.10/spkg/build/sage-5.10/module_list.py.orig sage-5.10/spkg/build/sage-5.10/module_list.py +--- sage-5.10/spkg/build/sage-5.10/module_list.py.orig 2013-07-29 19:43:09.023027448 -0300 ++++ sage-5.10/spkg/build/sage-5.10/module_list.py 2013-07-29 19:44:52.051031393 -0300 @@ -5,7 +5,7 @@ from distutils.core import setup from distutils.extension import Extension from sage.env import * @@ -22,7 +38,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sa -numpy_depends = [SAGE_LOCAL + '/lib/python/site-packages/numpy/core/include/numpy/_numpyconfig.h'] +numpy_depends = [get_python_lib(1) + '/numpy/core/include/numpy/_numpyconfig.h'] - flint_depends = [SAGE_INC + '/FLINT/flint.h'] + flint_depends = [SAGE_INC + '/flint/flint.h'] singular_depends = [SAGE_INC + '/libsingular.h', SAGE_INC + '/givaro/givconfig.h'] @@ -71,7 +72,7 @@ givaro_extra_compile_args =['-D__STDC_LI ### PolyBoRi settings @@ -33,7 +49,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sa polybori_major_version = '0.8' -@@ -662,7 +663,7 @@ ext_modules = [ +@@ -653,7 +654,7 @@ ext_modules = [ sources = ['sage/libs/lcalc/lcalc_Lfunction.pyx'], libraries = ['m', 'ntl', 'mpfr', 'gmp', 'gmpxx', 'Lfunction', 'stdc++'], @@ -42,21 +58,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/module_list.py.orig sage-5.9/spkg/build/sa extra_compile_args=["-O3", "-ffast-math"], language = 'c++'), -diff -up sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/glpk_backend.pxd.orig sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/glpk_backend.pxd ---- sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/glpk_backend.pxd.orig 2013-05-06 16:21:08.763095783 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/numerical/backends/glpk_backend.pxd 2013-05-06 16:21:12.815095939 -0300 -@@ -16,7 +16,7 @@ cdef extern from *: - cdef extern from "float.h": - cdef double DBL_MAX - --cdef extern from "../../../local/include/glpk.h": -+cdef extern from "glpk.h": - ctypedef struct c_glp_prob "glp_prob": - pass - ctypedef struct c_glp_iocp "glp_iocp": -diff -up sage-5.9/spkg/build/sage-5.9/setup.py.orig sage-5.9/spkg/build/sage-5.9/setup.py ---- sage-5.9/spkg/build/sage-5.9/setup.py.orig 2013-05-06 16:21:08.770095784 -0300 -+++ sage-5.9/spkg/build/sage-5.9/setup.py 2013-05-06 16:21:12.817095939 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/setup.py.orig sage-5.10/spkg/build/sage-5.10/setup.py +--- sage-5.10/spkg/build/sage-5.10/setup.py.orig 2013-07-29 19:43:09.041027448 -0300 ++++ sage-5.10/spkg/build/sage-5.10/setup.py 2013-07-29 19:48:14.195039134 -0300 @@ -38,21 +38,11 @@ except KeyError: SAGE_INC = os.path.join(SAGE_LOCAL,'include') @@ -78,10 +82,19 @@ diff -up sage-5.9/spkg/build/sage-5.9/setup.py.orig sage-5.9/spkg/build/sage-5.9 include_dirs = [SAGE_INC, - os.path.join(SAGE_INC, 'csage'), + 'c_lib/include', + SAGE_SRC, os.path.join(SAGE_SRC, 'sage', 'ext')] - # search for dependencies only -@@ -170,11 +160,11 @@ for m in ext_modules: +@@ -77,7 +67,7 @@ if DEVEL: + # compiler flag -Og is used. See also + # * http://trac.sagemath.org/sage_trac/ticket/14460 + # * http://gcc.gnu.org/bugzilla/show_bug.cgi?id=56982 +-if subprocess.call("""$CC --version | grep -i 'gcc.* 4[.][89]' >/dev/null """, shell=True) == 0: ++if subprocess.call("""gcc --version | grep -i 'gcc.* 4[.][89]' >/dev/null """, shell=True) == 0: + extra_compile_args.append('-fno-tree-dominator-opts') + + # Generate interpreters +@@ -171,11 +161,11 @@ for m in ext_modules: # FIMXE: Do NOT link the following libraries to each and # every module (regardless of the language btw.): @@ -95,20 +108,3 @@ diff -up sage-5.9/spkg/build/sage-5.9/setup.py.orig sage-5.9/spkg/build/sage-5.9 -diff -up sage-5.9/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig sage-5.9/spkg/build/conway_polynomials-0.4.p0/spkg-install ---- sage-5.9/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig 2013-05-06 17:47:06.493293291 -0300 -+++ sage-5.9/spkg/build/conway_polynomials-0.4.p0/spkg-install 2013-05-06 17:48:27.883296408 -0300 -@@ -2,9 +2,11 @@ - - import os - from sage.all import save --from sage.misc.misc import SAGE_SHARE - --install_root = os.path.join(SAGE_SHARE, 'conway_polynomials') -+if 'SAGE_SHARE' not in os.environ: -+ raise RuntimeError("SAGE_SHARE undefined, maybe run `sage -sh`?") -+ -+install_root = os.path.join(os.environ['SAGE_SHARE'], 'conway_polynomials') - - def create_db(): - db = {} diff --git a/sagemath-sagedoc.patch b/sagemath-sagedoc.patch index da8b615..88a27d4 100644 --- a/sagemath-sagedoc.patch +++ b/sagemath-sagedoc.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/doc/common/builder.py.orig sage-5.9/spkg/build/sage-5.9/doc/common/builder.py ---- sage-5.9/spkg/build/sage-5.9/doc/common/builder.py.orig 2013-05-07 18:11:12.277264082 -0300 -+++ sage-5.9/spkg/build/sage-5.9/doc/common/builder.py 2013-05-07 18:11:15.785264216 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/doc/common/builder.py.orig sage-5.10/spkg/build/sage-5.10/doc/common/builder.py +--- sage-5.10/spkg/build/sage-5.10/doc/common/builder.py.orig 2013-07-29 19:49:41.413042474 -0300 ++++ sage-5.10/spkg/build/sage-5.10/doc/common/builder.py 2013-07-29 19:49:53.076042920 -0300 @@ -32,7 +32,7 @@ from sage.env import SAGE_DOC, SAGE_SRC # SAGE_DOC, LANGUAGES, SPHINXOPTS, PAPER, OMIT, # PAPEROPTS, ALLSPHINXOPTS, NUM_THREADS, WEBSITESPHINXOPTS @@ -10,9 +10,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/doc/common/builder.py.orig sage-5.9/spkg/b ########################################## -diff -up sage-5.9/spkg/build/sage-5.9/doc/common/conf.py.orig sage-5.9/spkg/build/sage-5.9/doc/common/conf.py ---- sage-5.9/spkg/build/sage-5.9/doc/common/conf.py.orig 2013-05-07 18:11:12.286264082 -0300 -+++ sage-5.9/spkg/build/sage-5.9/doc/common/conf.py 2013-05-07 18:11:15.788264216 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/doc/common/conf.py.orig sage-5.10/spkg/build/sage-5.10/doc/common/conf.py +--- sage-5.10/spkg/build/sage-5.10/doc/common/conf.py.orig 2013-07-29 19:49:41.420042474 -0300 ++++ sage-5.10/spkg/build/sage-5.10/doc/common/conf.py 2013-07-29 19:49:53.077042920 -0300 @@ -1,5 +1,5 @@ import sys, os, sphinx -from sage.env import SAGE_DOC @@ -30,9 +30,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/doc/common/conf.py.orig sage-5.9/spkg/buil mathjax_relative = os.path.join('sagenb','data','mathjax') # It would be really nice if sphinx would copy the entire mathjax directory, -diff -up sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py.orig sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py ---- sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py.orig 2013-05-07 18:11:29.325264735 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py 2013-05-07 18:12:09.794266284 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/doctest/control.py.orig sage-5.10/spkg/build/sage-5.10/sage/doctest/control.py +--- sage-5.10/spkg/build/sage-5.10/sage/doctest/control.py.orig 2013-07-29 19:48:53.706040647 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/doctest/control.py 2013-07-29 19:49:53.079042920 -0300 @@ -88,7 +88,6 @@ class DocTestDefaults(SageObject): self.valgrind = False self.massif = False @@ -41,7 +41,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py.orig sage-5.9/spkg self.failed = False self.new = False self.show_skipped = False -@@ -161,7 +160,7 @@ class DocTestController(SageObject): +@@ -213,7 +212,7 @@ class DocTestController(SageObject): if options.gdb or options.debug: # Interactive debuggers: "infinite" timeout options.timeout = 0 @@ -50,7 +50,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py.orig sage-5.9/spkg # Non-interactive debuggers: 48 hours options.timeout = int(os.getenv('SAGE_TIMEOUT_VALGRIND', 48 * 60 * 60)) elif options.long: -@@ -766,13 +765,8 @@ class DocTestController(SageObject): +@@ -809,13 +808,8 @@ class DocTestController(SageObject): elif opt.cachegrind: toolname = "cachegrind" flags = os.getenv("SAGE_CACHEGRIND_FLAGS", "") @@ -64,7 +64,7 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py.orig sage-5.9/spkg if "%s" in flags: flags %= toolname + ".%p" # replace %s with toolname cmd += flags + sage_cmd -@@ -832,10 +826,10 @@ class DocTestController(SageObject): +@@ -875,10 +869,10 @@ class DocTestController(SageObject): 0 """ opt = self.options @@ -77,9 +77,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/doctest/control.py.orig sage-5.9/spkg return 2 return self.run_val_gdb() else: -diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/singular.py.orig sage-5.9/spkg/build/sage-5.9/sage/interfaces/singular.py ---- sage-5.9/spkg/build/sage-5.9/sage/interfaces/singular.py.orig 2013-05-07 18:11:12.296264082 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/interfaces/singular.py 2013-05-07 18:11:15.792264216 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/interfaces/singular.py.orig sage-5.10/spkg/build/sage-5.10/sage/interfaces/singular.py +--- sage-5.10/spkg/build/sage-5.10/sage/interfaces/singular.py.orig 2013-07-29 19:49:41.443042475 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/interfaces/singular.py 2013-07-29 19:49:53.081042920 -0300 @@ -2149,7 +2149,7 @@ def generate_docstring_dictionary(): nodes.clear() node_names.clear() @@ -89,9 +89,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/sage/interfaces/singular.py.orig sage-5.9/ new_node = re.compile("File: singular\.hlp, Node: ([^,]*),.*") new_lookup = re.compile("\* ([^:]*):*([^.]*)\..*") -diff -up sage-5.9/spkg/build/sage-5.9/sage/misc/latex_macros.py.orig sage-5.9/spkg/build/sage-5.9/sage/misc/latex_macros.py ---- sage-5.9/spkg/build/sage-5.9/sage/misc/latex_macros.py.orig 2013-05-07 18:11:12.303264083 -0300 -+++ sage-5.9/spkg/build/sage-5.9/sage/misc/latex_macros.py 2013-05-07 18:11:15.793264216 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/sage/misc/latex_macros.py.orig sage-5.10/spkg/build/sage-5.10/sage/misc/latex_macros.py +--- sage-5.10/spkg/build/sage-5.10/sage/misc/latex_macros.py.orig 2013-07-29 19:49:41.450042475 -0300 ++++ sage-5.10/spkg/build/sage-5.10/sage/misc/latex_macros.py 2013-07-29 19:49:53.082042920 -0300 @@ -142,7 +142,7 @@ def convert_latex_macro_to_mathjax(macro return name + ': ["' + defn + '",' + str(num_args) + ']' diff --git a/sagemath-sagenb.patch b/sagemath-sagenb.patch index d9eec3f..3763273 100644 --- a/sagemath-sagenb.patch +++ b/sagemath-sagenb.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py.orig sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py ---- sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py.orig 2012-10-20 11:29:36.315150735 -0300 -+++ sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py 2012-10-20 11:29:56.569151510 -0300 +diff -up sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py.orig sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py +--- sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py.orig 2012-10-20 11:29:36.315150735 -0300 ++++ sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py 2012-10-20 11:29:56.569151510 -0300 @@ -27,7 +27,7 @@ class SageNBFlask(Flask): self.add_static_path('/javascript', DATA) self.add_static_path('/static', DATA) @@ -10,9 +10,9 @@ diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/flask_version/base.py.orig import mimetypes mimetypes.add_type('text/plain','.jmol') -diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html ---- sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig 2012-10-20 11:31:17.315154602 -0300 -+++ sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html 2012-10-20 11:31:41.764155539 -0300 +diff -up sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html +--- sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig 2012-10-20 11:31:17.315154602 -0300 ++++ sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/notebook/base.html 2012-10-20 11:31:41.764155539 -0300 @@ -69,7 +69,7 @@ INPUT: @@ -22,9 +22,9 @@ diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/html/note {% if JEDITABLE_TINYMCE and not worksheet.docbrowser() and not worksheet.is_published() %} -diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py.orig sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py ---- sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py.orig 2012-10-20 11:33:00.483158553 -0300 -+++ sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py 2012-10-20 11:33:17.700159212 -0300 +diff -up sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py.orig sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py +--- sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py.orig 2012-10-20 11:33:00.483158553 -0300 ++++ sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py 2012-10-20 11:33:17.700159212 -0300 @@ -2367,7 +2367,7 @@ class Cell(Cell_generic): jmol_script = jmol_file.read() jmol_file.close() @@ -34,9 +34,9 @@ diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/cell.py.or jmol_file = open(jmol_name, 'w') jmol_file.write(jmol_script) -diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py.orig sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py ---- sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py.orig 2012-10-20 11:31:55.106156049 -0300 -+++ sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py 2012-10-20 11:32:51.460158207 -0300 +diff -up sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py.orig sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py +--- sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py.orig 2012-10-20 11:31:55.106156049 -0300 ++++ sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebook.py 2012-10-20 11:32:51.460158207 -0300 @@ -46,15 +46,14 @@ sagenb.notebook.misc.DIR = %(cwd)r #We s # Flask # ######### @@ -57,9 +57,9 @@ diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/notebook/run_notebo def save_notebook(notebook): print "Quitting all running worksheets..." -diff -up sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js ---- sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig 2012-11-14 22:46:56.488853512 -0200 -+++ sage-5.9/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js 2012-11-14 22:49:02.772858348 -0200 +diff -up sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js +--- sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig 2012-11-14 22:46:56.488853512 -0200 ++++ sage-5.10/spkg/build/sagenb-0.10.4/src/sagenb/sagenb/data/sage/js/jmol_lib.js 2012-11-14 22:49:02.772858348 -0200 @@ -256,9 +256,6 @@ function makeCntrlPanels(url, n, functio panelHTML +=' arbitrarily resizable.
'; //static image to save diff --git a/sagemath-scons.patch b/sagemath-scons.patch index 05efd17..07eb3f2 100644 --- a/sagemath-scons.patch +++ b/sagemath-scons.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct.orig sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct ---- sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct.orig 2013-02-23 12:55:48.382841120 -0300 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/SConstruct 2013-02-23 12:56:25.037842523 -0300 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct.orig sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct +--- sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct.orig 2013-02-23 12:55:48.382841120 -0300 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/SConstruct 2013-02-23 12:56:25.037842523 -0300 @@ -126,18 +126,31 @@ env['PYV']=platform.python_version().rsp # The SCons convenience function Split is the only strange thing # to python programmers. It just makes a list by splitting on diff --git a/sagemath-scripts.patch b/sagemath-scripts.patch index b3ba932..f2241ec 100644 --- a/sagemath-scripts.patch +++ b/sagemath-scripts.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage ---- sage-5.9/spkg/bin/sage.orig 2013-05-06 12:05:34.567508584 -0300 -+++ sage-5.9/spkg/bin/sage 2013-05-06 12:21:04.123544180 -0300 +diff -up sage-5.10/spkg/bin/sage.orig sage-5.10/spkg/bin/sage +--- sage-5.10/spkg/bin/sage.orig 2013-07-29 19:28:12.913993132 -0300 ++++ sage-5.10/spkg/bin/sage 2013-07-29 19:37:54.835015416 -0300 @@ -11,17 +11,14 @@ usage() { echo " file. -- run given .sage, .py or .spyx files" echo " -advanced -- list all command line options" @@ -19,9 +19,9 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo " -python [...] -- run the Python interpreter" echo " -R [...] -- run Sage's R with given arguments" echo " -singular [...] -- run Sage's singular with given arguments" -@@ -36,10 +33,6 @@ usage() { - echo " --verbose - print debugging output during the test" +@@ -37,10 +34,6 @@ usage() { echo " --optional - controls which optional tests are run" + echo " --sagenb - test all sagenb files" echo " --help - show all testing options" - echo " -upgrade [url] -- download, build and install standard packages from" - echo " given url. If url not given, automatically selects a" @@ -30,7 +30,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo " -v, -version -- print the Sage version" exit 0 } -@@ -63,14 +56,14 @@ usage_advanced() { +@@ -64,14 +57,14 @@ usage_advanced() { echo " -root -- print the Sage root directory" echo " -gthread, -qthread, -q4thread, -wthread, -pylab" echo " -- pass the option through to ipython" @@ -47,7 +47,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo " -inotebook [...] -- start the *insecure* Sage notebook" echo " -n, -notebook [...] -- start the Sage notebook (options are the same" echo " as for the notebook command in Sage)" -@@ -85,16 +78,11 @@ usage_advanced() { +@@ -86,16 +79,10 @@ usage_advanced() { echo " -gap [...] -- run Sage's Gap with given arguments" echo " -gdb -- run Sage under the control of gdb" echo " -gp [...] -- run Sage's PARI/GP calculator with given arguments" @@ -56,7 +56,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo " Sage), passing additional options to IPython" - echo " -kash [...] -- run Sage's Kash with given arguments" - test -x "$SAGE_LOCAL/bin/kash" || \ - echo " (not installed currently, run sage -i kash)" +- echo " (not installed currently, run sage -i kash)" echo " -lisp [...] -- run Lisp interpreter included with Sage" echo " -M2 [...] -- run Sage's Macaulay2 with given arguments" - test -x "$SAGE_LOCAL/bin/M2" || \ @@ -64,7 +64,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo " -maxima [...] -- run Sage's Maxima with given arguments" echo " -mwrank [...] -- run Sage's mwrank with given arguments" echo " -python [...] -- run the Python interpreter" -@@ -108,73 +96,6 @@ usage_advanced() { +@@ -109,74 +96,6 @@ usage_advanced() { echo #### 1.......................26..................................................78 #### |.....................--.|...................................................| @@ -126,6 +126,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage - echo " --initial - only show the first failure per block" - echo " --debug - drop into PDB after an unexpected error" - echo " --failed - only test files that failed last test" +- echo " --sagenb - test all sagenb files" - echo " --help - show all testing options" - echo " -tp [...] -- like -t above, but tests in parallel using N threads" - echo " with 0 interpreted as a sensible default" @@ -138,7 +139,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo "Documentation:" echo " -coverage -- give info about doctest coverage of files" echo " -coverageall -- give summary info about doctest coverage of all" -@@ -197,20 +118,6 @@ usage_advanced() { +@@ -199,19 +118,6 @@ usage_advanced() { echo #### 1.......................26..................................................78 #### |.....................--.|...................................................| @@ -146,7 +147,6 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage - echo " -bdist VER -- build a binary distribution of Sage" - echo " -combinat [...] -- run sage-combinat patch management script" - echo " -crap sage-ver.tar -- detect suspicious garbage in sage source tarball" -- echo " -merge -- run Sage's automatic merge and test script" - echo " -pkg -- create Sage package dir.spkg from a given directory" - echo " -pkg_nc -- as -pkg, but do not compress the package" - echo " -rsyncdist VER -- build an rsyncable source distribution of Sage (you" @@ -159,7 +159,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo "Valgrind memory debugging:" echo " -cachegrind -- run Sage using Valgrind's cachegrind tool. The log" echo " files are named sage-cachegrind.PID can be found in" -@@ -224,9 +131,6 @@ usage_advanced() { +@@ -225,9 +131,6 @@ usage_advanced() { echo " -memcheck -- run Sage using Valgrind's memcheck tool. The log" echo " files are named sage-memcheck.PID can be found in" echo " $DOT_SAGE" @@ -169,7 +169,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage echo " -valgrind -- this is an alias for -memcheck" echo echo "You can also use -- before a long option, e.g., 'sage --optional'." -@@ -246,15 +150,6 @@ if [ "$1" = '--nodotsage' ]; then +@@ -247,15 +150,6 @@ if [ "$1" = '--nodotsage' ]; then exit $status fi @@ -185,11 +185,8 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage if [ $# -gt 0 ]; then if [ "$1" = '-h' -o "$1" = '-?' -o "$1" = '-help' -o "$1" = '--help' ]; then usage -@@ -264,28 +159,13 @@ if [ $# -gt 0 ]; then - fi - fi +@@ -268,25 +162,11 @@ fi -- # Prepare for running Sage, either interactively or non-interactively. sage_setup() { - # Check that we're not in a source tarball which hasn't been built yet (#13561). @@ -214,11 +211,10 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage if [ ! -d "$IPYTHONDIR" ]; then # make sure that $DOT_SAGE exists so that ipython will happily # create its config directories there. If DOT_SAGE doesn't -@@ -295,21 +175,6 @@ sage_setup() { - sage-cleaner &>/dev/null & +@@ -297,20 +177,6 @@ sage_setup() { } -- + -# Check to see if the whole Sage install tree has moved. If so, -# change various hardcoded paths. Skip this if we don't have write -# access to $SAGE_LOCAL (e.g. when running as a different user) or @@ -236,7 +232,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage # Start an interactive Sage session, this function never returns. interactive_sage() { sage_setup -@@ -348,12 +213,6 @@ if [ "$1" = '-root' -o "$1" = '--root' +@@ -349,12 +215,6 @@ if [ "$1" = '-root' -o "$1" = '--root' exit 0 fi @@ -249,7 +245,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage ##################################################################### # Run Sage's versions of the standard Algebra/Geometry etc. software ##################################################################### -@@ -363,74 +222,59 @@ if [ "$1" = '-axiom' -o "$1" = '--axiom' +@@ -364,74 +224,59 @@ if [ "$1" = '-axiom' -o "$1" = '--axiom' exec axiom "$@" fi @@ -335,7 +331,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage fi if [ "$1" = '-python' -o "$1" = '--python' ]; then -@@ -440,7 +284,7 @@ fi +@@ -441,12 +286,12 @@ fi if [ "$1" = '-R' -o "$1" = '--R' ]; then shift @@ -344,7 +340,13 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage fi if [ "$1" = '-ipython' -o "$1" = '--ipython' ]; then -@@ -566,33 +410,6 @@ EOF + shift +- exec "$SAGE_LOCAL/bin/ipython" "$@" ++ exec ipython "$@" + fi + + if [ "$1" = '-sh' -o "$1" = '--sh' ]; then +@@ -567,28 +412,6 @@ EOF exit $status fi @@ -356,11 +358,6 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage - exec "$SAGE_LOCAL/bin/hg" "$@" -fi - --if [ "$1" = '-merge' -o "$1" = '--merge' ]; then -- shift -- exec sage-apply-ticket "$@" --fi -- -##################################################################### -# Test coverage of a module? -##################################################################### @@ -378,7 +375,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage ##################################################################### # File conversion ##################################################################### -@@ -608,36 +425,15 @@ if [ "$1" = '-rst2sws' -o "$1" = '--rst2 +@@ -604,36 +427,15 @@ if [ "$1" = '-rst2sws' -o "$1" = '--rst2 fi ##################################################################### @@ -415,7 +412,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage if [ "$1" = "-inotebook" -o "$1" = '--inotebook' ]; then shift sage-cleaner &>/dev/null & -@@ -656,86 +452,14 @@ if [ "$1" = '-grepdoc' -o "$1" = "--grep +@@ -652,86 +454,14 @@ if [ "$1" = '-grepdoc' -o "$1" = "--grep exit 0 fi @@ -504,7 +501,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage shift exec sage-runtests -p "$@" else -@@ -744,16 +468,6 @@ if [ "$1" = '-t' -o "$1" = '-bt' -o "$1" +@@ -740,10 +470,7 @@ if [ "$1" = '-t' -o "$1" = '-bt' -o "$1" fi fi @@ -512,16 +509,11 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage - if [ "$1" = '-btnew' ]; then - build_sage - fi -- shift -- SAGE_BANNER="no" -- sage_setup -- exec sage-runtests --new "$@" --fi -- - if [ "$1" = '-testall' -o "$1" = "--testall" ]; then ++if [ "$1" = '-tnew' ]; then shift SAGE_BANNER="no" -@@ -761,12 +475,6 @@ if [ "$1" = '-testall' -o "$1" = "--test + sage_setup +@@ -757,12 +484,6 @@ if [ "$1" = '-testall' -o "$1" = "--test exec sage-runtests -a "$@" fi @@ -534,7 +526,7 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage if [ "$1" = '-c' ]; then shift SAGE_BANNER="no" -@@ -775,166 +483,6 @@ if [ "$1" = '-c' ]; then +@@ -771,166 +492,6 @@ if [ "$1" = '-c' ]; then exec sage-eval "$@" fi @@ -695,13 +687,13 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage - -if [ "$1" = "-docbuild" -o "$1" = "--docbuild" ]; then - shift -- exec python "$SAGE_ROOT/devel/sage/doc/common/builder.py" "$@" +- exec python "$SAGE_DOC/common/builder.py" "$@" -fi - if [ "$1" = '-gdb' -o "$1" = "--gdb" ]; then shift sage_setup -@@ -983,12 +531,6 @@ if [ "$1" = '-callgrind' -o "$1" = "--ca +@@ -979,12 +540,6 @@ if [ "$1" = '-callgrind' -o "$1" = "--ca exec sage-callgrind "$@" fi @@ -714,9 +706,9 @@ diff -up sage-5.9/spkg/bin/sage.orig sage-5.9/spkg/bin/sage if [ "$1" = '-startuptime' -o "$1" = '--startuptime' ]; then exec sage-startuptime.py "$@" fi -diff -up sage-5.9/spkg/build/sage_scripts-5.9/sage-runtests.orig sage-5.9/spkg/build/sage_scripts-5.9/sage-runtests ---- sage-5.9/spkg/build/sage_scripts-5.9/sage-runtests.orig 2013-05-06 12:10:00.030518749 -0300 -+++ sage-5.9/spkg/build/sage_scripts-5.9/sage-runtests 2013-05-06 12:22:51.300548284 -0300 +diff -up sage-5.10/spkg/build/sage_scripts-5.10/sage-runtests.orig sage-5.10/spkg/build/sage_scripts-5.10/sage-runtests +--- sage-5.10/spkg/build/sage_scripts-5.10/sage-runtests.orig 2013-07-29 19:28:12.926993133 -0300 ++++ sage-5.10/spkg/build/sage_scripts-5.10/sage-runtests 2013-07-29 19:29:16.809995579 -0300 @@ -54,10 +54,6 @@ if __name__ == "__main__": help="run doctests using Valgrind's cachegrind tool. The log " "files are named sage-cachegrind.PID and can be found in " + @@ -728,9 +720,9 @@ diff -up sage-5.9/spkg/build/sage_scripts-5.9/sage-runtests.orig sage-5.9/spkg/b parser.add_option("-f", "--failed", action="store_true", default=False, help="doctest only those files that failed in the previous run") -diff -up sage-5.9/spkg/build/sage_scripts-5.9/sage-valgrind.orig sage-5.9/spkg/build/sage_scripts-5.9/sage-valgrind ---- sage-5.9/spkg/build/sage_scripts-5.9/sage-valgrind.orig 2013-05-06 12:05:34.644508587 -0300 -+++ sage-5.9/spkg/build/sage_scripts-5.9/sage-valgrind 2013-05-06 12:22:03.076546437 -0300 +diff -up sage-5.10/spkg/build/sage_scripts-5.10/sage-valgrind.orig sage-5.10/spkg/build/sage_scripts-5.10/sage-valgrind +--- sage-5.10/spkg/build/sage_scripts-5.10/sage-valgrind.orig 2013-07-29 19:28:12.939993133 -0300 ++++ sage-5.10/spkg/build/sage_scripts-5.10/sage-valgrind 2013-07-29 19:28:42.761994275 -0300 @@ -11,7 +11,7 @@ fi LOG="$DOT_SAGE"/valgrind/sage-memcheck.%p echo "Log file is $LOG" diff --git a/sagemath-unpatched_ntl.patch b/sagemath-unpatched_ntl.patch index 54c39de..0880a5d 100644 --- a/sagemath-unpatched_ntl.patch +++ b/sagemath-unpatched_ntl.patch @@ -1,6 +1,6 @@ -diff -up sage-5.9/spkg/build/sage-5.9/c_lib/include/ntl_wrap.h.orig sage-5.9/spkg/build/sage-5.9/c_lib/include/ntl_wrap.h ---- sage-5.9/spkg/build/sage-5.9/c_lib/include/ntl_wrap.h.orig 2013-01-25 21:54:01.313110341 -0200 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/include/ntl_wrap.h 2013-01-25 21:54:13.153110794 -0200 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h.orig sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h +--- sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h.orig 2013-01-25 21:54:01.313110341 -0200 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/include/ntl_wrap.h 2013-01-25 21:54:13.153110794 -0200 @@ -35,8 +35,6 @@ using namespace NTL; EXTERN void del_charstar(char*); @@ -10,9 +10,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/c_lib/include/ntl_wrap.h.orig sage-5.9/spk //////// ZZ ////////// #ifndef __cplusplus -diff -up sage-5.9/spkg/build/sage-5.9/c_lib/src/ntl_wrap.cpp.orig sage-5.9/spkg/build/sage-5.9/c_lib/src/ntl_wrap.cpp ---- sage-5.9/spkg/build/sage-5.9/c_lib/src/ntl_wrap.cpp.orig 2013-01-25 21:53:32.800109249 -0200 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/src/ntl_wrap.cpp 2013-01-25 21:53:49.625109893 -0200 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp.orig sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp +--- sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp.orig 2013-01-25 21:53:32.800109249 -0200 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/src/ntl_wrap.cpp 2013-01-25 21:53:49.625109893 -0200 @@ -11,13 +11,6 @@ void del_charstar(char* a) { delete[] a; } @@ -27,9 +27,9 @@ diff -up sage-5.9/spkg/build/sage-5.9/c_lib/src/ntl_wrap.cpp.orig sage-5.9/spkg/ //////// ZZ ////////// /* Return value is only valid if the result should fit into an int. -diff -up sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c.orig sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c ---- sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c.orig 2013-01-25 21:54:34.072111596 -0200 -+++ sage-5.9/spkg/build/sage-5.9/c_lib/src/stdsage.c 2013-01-25 21:54:49.832112199 -0200 +diff -up sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c.orig sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c +--- sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c.orig 2013-01-25 21:54:34.072111596 -0200 ++++ sage-5.10/spkg/build/sage-5.10/c_lib/src/stdsage.c 2013-01-25 21:54:49.832112199 -0200 @@ -29,27 +29,12 @@ void init_global_empty_tuple(void) { global_empty_tuple = PyTuple_New(0); } diff --git a/sagemath.spec b/sagemath.spec index e3bd162..0919f92 100644 --- a/sagemath.spec +++ b/sagemath.spec @@ -55,7 +55,7 @@ %global flintqs_pkg flintqs-20070817.p8 %global graphs_pkg graphs-20120404.p4 %global pexpect_pkg pexpect-2.0.p5 -%global polytopes_db_pkg polytopes_db-20100210.p2 +%global polytopes_db_pkg polytopes_db-20120220 %global rubiks_pkg rubiks-20070912.p18 %global sagenb_pkg sagenb-0.10.4 %global sagetex_pkg sagetex-2.3.4 @@ -65,7 +65,7 @@ %global SAGE_ROOT %{_libdir}/sagemath %global SAGE_LOCAL %{SAGE_ROOT}/local %global SAGE_SRC %{SAGE_ROOT}/src -%global SAGE_DOC %{_docdir}/%{name}-%{version} +%global SAGE_DOC %{_docdir}/%{name} %global SAGE_SHARE %{_datadir}/sagemath %global SAGE_EXTCODE %{SAGE_SHARE}/ext %global SAGE_PYTHONPATH %{SAGE_ROOT}/site-packages @@ -73,8 +73,8 @@ Name: sagemath Group: Applications/Engineering Summary: A free open-source mathematics software system -Version: 5.9 -Release: 9%{?dist} +Version: 5.10 +Release: 1%{?dist} # The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file # Additionally, every $files section has a comment with the license name # before files with that license @@ -219,6 +219,10 @@ Patch33: %{name}-m4rie.patch # https://bugzilla.redhat.com/show_bug.cgi?id=961372 Patch34: %{name}-rh_bz_961372.patch +# Required if running python-flask-0.10.1 +# sagemath expects python-flask-0.9 +Patch35: %{name}-flask.patch + BuildRequires: 4ti2 BuildRequires: atlas-devel BuildRequires: cddlib-tools @@ -237,7 +241,7 @@ BuildRequires: factory-devel %if %{have_fes} BuildRequires: fes-devel %endif -BuildRequires: flint-devel +BuildRequires: flint-devel >= 2.3 BuildRequires: gmp-ecm-devel BuildRequires: gap BuildRequires: GAPDoc @@ -362,6 +366,9 @@ Requires: tachyon Requires: texlive Requires: vecmath +# Missing build requires on armv7hl +ExclusiveArch: %{ix86} x86_64 + %description Sage is a free open-source mathematics software system licensed under the GPL. It combines the power of many existing open-source @@ -702,6 +709,9 @@ popd %if 0%{?fedora} >= 19 %patch32 -p1 +%endif + +%if 0%{?fedora} == 19 %patch33 -p1 %endif @@ -709,6 +719,10 @@ popd %patch34 -p1 %endif +%if 0%{?fedora} >= 20 +%patch35 -p1 +%endif + #------------------------------------------------------------------------ # ensure proper/preferred libatlas is in linker path pushd spkg/build/sage-%{version} @@ -718,8 +732,7 @@ pushd spkg/build/sage-%{version} popd # remove bundled jar files before build -rm spkg/build/extcode-%{version}/notebook/java/3d/lib/sage3d.jar \ - spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data/sage3d/lib/sage3d.jar +rm spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data/sage3d/lib/sage3d.jar # remove binary egg rm -r spkg/build/%{sagenb_pkg}/src/sagenb/sagenb.egg-info @@ -1129,8 +1142,8 @@ ln -sf %{SAGE_SHARE} $SAGE_ROOT/share ln -sf src $SAGE_ROOT/devel # Install menu and icons -pushd spkg/build/extcode-%{version} - install -p -m644 -D notebook/images/icon32x32.png %{buildroot}%{_datadir}/pixmaps/%{name}.png +pushd spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data + install -p -m644 -D sage/images/icon32x32.png %{buildroot}%{_datadir}/pixmaps/%{name}.png popd mkdir -p %{buildroot}%{_datadir}/applications cat > %{buildroot}%{_datadir}/applications/%{name}.desktop << EOF @@ -1268,6 +1281,7 @@ exit 0 #------------------------------------------------------------------------ %files data %dir %{SAGE_SHARE} +%dir %{SAGE_EXTCODE} %{SAGE_EXTCODE}/sage #------------------------------------------------------------------------ @@ -1284,7 +1298,6 @@ exit 0 #------------------------------------------------------------------------ %files data-extcode # GPLv2+ -%dir %{SAGE_EXTCODE} %{SAGE_EXTCODE}/gap %{SAGE_EXTCODE}/images %{SAGE_EXTCODE}/magma @@ -1435,7 +1448,10 @@ exit 0 ######################################################################## %changelog -* Sun Aug 04 2013 Fedora Release Engineering - 5.9-9 +* Mon Aug 5 2013 pcpa - 5.10-1 +- Update to sagemath 5.10. + +* Sun Aug 04 2013 Fedora Release Engineering - Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild * Wed Jul 3 2013 Jerry James - 5.9-8 diff --git a/sources b/sources index 4fbd706..14b318a 100644 --- a/sources +++ b/sources @@ -1 +1 @@ -708520904f2d42039c714ac72a631948 sage-5.9.tar +bfca3afc9030e63c7e7200287ee0135e sage-5.10.tar