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Rebuild for gap 4.12.0 and pari 2.15.0.

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This commit is contained in:
Jerry James 2022-09-27 21:31:16 -06:00
parent de7dc2473c
commit 545b239d33
3 changed files with 480 additions and 52 deletions
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13
sagemath-cremona.patch
View file

@ -1,3 +1,16 @@
Fix this error:
Inserting allgens.90000-99999
Committing...
Traceback (most recent call last):
File "/builddir/build/BUILD/sage-9.6/cremona.sage.py", line 10, in <module>
c._init_from_ftpdata('ecdata-2019-10-29')
File "/builddir/build/BUILDROOT/sagemath-9.6-4.fc38.x86_64/usr/lib64/python3.11/site-packages/sage/databases/cremona.py", line 1397, in _init_from_ftpdata
self.vacuum()
File "/builddir/build/BUILDROOT/sagemath-9.6-4.fc38.x86_64/usr/lib64/python3.11/site-packages/sage/databases/sql_db.py", line 2180, in vacuum
self.__connection__.execute('VACUUM')
sqlite3.OperationalError: cannot VACUUM from within a transaction
diff -up src/sage/databases/cremona.py.orig src/sage/databases/cremona.py
--- src/sage/databases/cremona.py.orig 2021-08-22 02:44:33.000000000 -0600
+++ src/sage/databases/cremona.py 2021-08-26 13:33:03.200366675 -0600

485
sagemath-libgap.patch
View file

@ -1,7 +1,120 @@
diff -up src/doc/en/thematic_tutorials/lie/weyl_groups.rst.orig src/doc/en/thematic_tutorials/lie/weyl_groups.rst
--- src/doc/en/thematic_tutorials/lie/weyl_groups.rst.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/doc/en/thematic_tutorials/lie/weyl_groups.rst 2022-09-14 15:23:59.397522485 -0600
@@ -139,12 +139,12 @@ string, which you can print::
X.1 1 1 1 1 1 1 1 1 1 1 1 1 1
X.2 1 -1 1 1 -1 1 1 -1 -1 -1 1 1 1
X.3 2 . 2 -1 . 2 2 . . . -1 2 2
- X.4 3 -1 -1 . 1 -1 3 -1 1 -1 . -1 3
- X.5 3 -1 -1 . 1 3 -1 -1 -1 1 . -1 3
- X.6 3 1 -1 . -1 -1 3 1 -1 1 . -1 3
- X.7 3 1 -1 . -1 3 -1 1 1 -1 . -1 3
- X.8 3 -1 3 . -1 -1 -1 -1 1 1 . -1 3
- X.9 3 1 3 . 1 -1 -1 1 -1 -1 . -1 3
+ X.4 3 -1 -1 . 1 3 -1 -1 -1 1 . -1 3
+ X.5 3 1 -1 . -1 3 -1 1 1 -1 . -1 3
+ X.6 3 -1 3 . -1 -1 -1 -1 1 1 . -1 3
+ X.7 3 -1 -1 . 1 -1 3 -1 1 -1 . -1 3
+ X.8 3 1 3 . 1 -1 -1 1 -1 -1 . -1 3
+ X.9 3 1 -1 . -1 -1 3 1 -1 1 . -1 3
X.10 4 -2 . -1 . . . 2 . . 1 . -4
X.11 4 2 . -1 . . . -2 . . 1 . -4
X.12 6 . -2 . . -2 -2 . . . . 2 6
diff -up src/sage/coding/codecan/autgroup_can_label.pyx.orig src/sage/coding/codecan/autgroup_can_label.pyx
--- src/sage/coding/codecan/autgroup_can_label.pyx.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/coding/codecan/autgroup_can_label.pyx 2022-09-14 15:25:12.653773783 -0600
@@ -76,7 +76,7 @@ columns do share the same coloring::
[[1],
[2],
[3, 5, 4],
- [6, 19, 16, 9, 21, 10, 8, 15, 14, 11, 20, 13, 12, 7, 17, 18]]
+ [6, 19, 16, 21, 9, 10, 15, 8, 20, 11, 14, 13, 7, 12, 18, 17]]
We can also restrict the group action to linear isometries::
diff -up src/sage/coding/linear_code.py.orig src/sage/coding/linear_code.py
--- src/sage/coding/linear_code.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/coding/linear_code.py 2022-09-14 15:30:11.231797910 -0600
@@ -465,7 +465,10 @@ class AbstractLinearCode(AbstractLinearC
0
sage: C = codes.HammingCode(GF(4, 'z'), 3)
sage: C.automorphism_group_gens()
- ([((1, 1, 1, 1, 1, z + 1, z, z + 1, z, z, z, 1, 1, z + 1, z + 1, z, z + 1, z, z + 1, z + 1, z + 1); (1,14,6,7,4,10,11,19)(2,8,16,13,3,17,21,15)(9,12,18,20), Ring endomorphism of Finite Field in z of size 2^2
+ ([((1, 1, 1, z, z + 1, 1, 1, 1, 1, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z); (1,13,14,20)(2,21,8,18,7,16,19,15)(3,10,5,12,17,9,6,4), Ring endomorphism of Finite Field in z of size 2^2
+ Defn: z |--> z + 1),
+ ((z, 1, z, z, z, z + 1, z, z, z, z, z, z, z + 1, z, z, z, z, z + 1, z, z, z); (1,11,5,12,3,19)(2,8)(6,18,13)(7,17,15)(9,10,14,16,20,21), Ring endomorphism of Finite Field in z of size 2^2
+ Defn: z |--> z + 1),
Defn: z |--> z + 1),
((z + 1, 1, 1, z, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z + 1, 1, z, z + 1, z + 1, z); (1,18,6,19,2,9,17,10,13,14,21,11,4,5,12)(3,20,7,16,8), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z),
@@ -473,19 +476,20 @@ class AbstractLinearCode(AbstractLinearC
Defn: z |--> z)],
362880)
sage: C.automorphism_group_gens(equivalence="linear")
- ([((z + 1, 1, z + 1, z + 1, z + 1, z, 1, z, 1, 1, 1, 1, z + 1, z + 1, z + 1, z, z, 1, z, z, z); (1,15,2,8,16,18,3)(4,9,12,13,20,10,11)(5,21,14,6,7,19,17), Ring endomorphism of Finite Field in z of size 2^2
+ ([((z, 1, z + 1, z + 1, 1, z + 1, z, 1, z + 1, z + 1, 1, z, 1, z + 1, z, 1, z, 1, z + 1, 1, 1); (1,12,11,10,6,8,9,20,13,21,5,14,3,16,17,19,7,4,2,15,18), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z),
- ((z + 1, z + 1, z + 1, z + 1, z + 1, 1, z, 1, z, z, z, 1, z, 1, 1, 1, z + 1, z + 1, z + 1, 1, z); (1,15,21,8,9)(2,18,5,3,11,16,7,10,19,13,12,4,17,6,20), Ring endomorphism of Finite Field in z of size 2^2
+ ((z + 1, z + 1, z + 1, z, 1, 1, z, z, 1, z + 1, z, 1, 1, z, 1, z + 1, z, z + 1, z + 1, 1, z); (1,3,18,2,17,6,19)(4,15,13,20,7,14,16)(5,11,8,21,12,9,10), Ring endomorphism of Finite Field in z of size 2^2
+ Defn: z |--> z),
Defn: z |--> z),
((z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1); (), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z)],
181440)
sage: C.automorphism_group_gens(equivalence="permutational")
- ([((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,19)(3,17)(4,21)(5,20)(7,14)(9,12)(10,16)(11,15), Ring endomorphism of Finite Field in z of size 2^2
+ ([((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,11)(3,10)(4,9)(5,7)(12,21)(14,20)(15,19)(16,17), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z),
- ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,11)(3,10)(4,9)(5,7)(12,21)(14,20)(15,19)(16,17), Ring endomorphism of Finite Field in z of size 2^2
+ ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (2,18)(3,19)(4,10)(5,16)(8,13)(9,14)(11,21)(15,20), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z),
- ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,17)(2,8)(3,14)(4,10)(7,12)(9,19)(13,18)(15,20), Ring endomorphism of Finite Field in z of size 2^2
+ ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,19)(3,17)(4,21)(5,20)(7,14)(9,12)(10,16)(11,15), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z),
((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (2,13)(3,14)(4,20)(5,11)(8,18)(9,19)(10,15)(16,21), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z)],
@@ -691,10 +695,10 @@ class AbstractLinearCode(AbstractLinearC
sage: C_iso == aut_group_can_label.get_canonical_form()
True
sage: aut_group_can_label.get_autom_gens()
- [((1, 1, 1, 1, 1, z + 1, z, z + 1, z, z, z, 1, 1, z + 1, z + 1, z, z + 1, z, z + 1, z + 1, z + 1); (1,14,6,7,4,10,11,19)(2,8,16,13,3,17,21,15)(9,12,18,20), Ring endomorphism of Finite Field in z of size 2^2
+ [((1, 1, 1, z, z + 1, 1, 1, 1, 1, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z); (1,13,14,20)(2,21,8,18,7,16,19,15)(3,10,5,12,17,9,6,4), Ring endomorphism of Finite Field in z of size 2^2
++ Defn: z |--> z + 1),
++ ((z, 1, z, z, z, z + 1, z, z, z, z, z, z, z + 1, z, z, z, z, z + 1, z, z, z); (1,11,5,12,3,19)(2,8)(6,18,13)(7,17,15)(9,10,14,16,20,21), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z + 1),
- ((z + 1, 1, 1, z, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z + 1, 1, z, z + 1, z + 1, z); (1,18,6,19,2,9,17,10,13,14,21,11,4,5,12)(3,20,7,16,8), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z),
((z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z); (), Ring endomorphism of Finite Field in z of size 2^2
Defn: z |--> z)]
"""
diff -up src/sage/combinat/root_system/hecke_algebra_representation.py.orig src/sage/combinat/root_system/hecke_algebra_representation.py
--- src/sage/combinat/root_system/hecke_algebra_representation.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/combinat/root_system/hecke_algebra_representation.py 2022-09-14 15:30:46.462918766 -0600
@@ -355,7 +355,7 @@ class HeckeAlgebraRepresentation(WithEqu
sage: q1, q2 = K.gens()
sage: KW = W.algebra(K)
sage: x = KW.an_element(); x
- 123 + 3*32 + 2*3 + e
+ 123 + 3*2312 + 2*31 + e
sage: T = KW.demazure_lusztig_operators(q1,q2)
sage: T12 = T.Tw( (1,2) )
diff -up src/sage/combinat/symmetric_group_algebra.py.orig src/sage/combinat/symmetric_group_algebra.py
--- src/sage/combinat/symmetric_group_algebra.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/combinat/symmetric_group_algebra.py 2022-09-14 15:35:42.552934349 -0600
@@ -101,7 +101,7 @@ def SymmetricGroupAlgebra(R, W, category
sage: SGA.group()
Weyl Group of type ['A', 3] (as a matrix group acting on the ambient space)
sage: SGA.an_element()
- s1*s2*s3 + 3*s3*s2 + 2*s3 + 1
+ s1*s2*s3 + 3*s2*s3*s1*s2 + 2*s3*s1 + 1
The preferred way to construct the symmetric group algebra is to
go through the usual ``algebra`` method::
diff -up src/sage/env.py.orig src/sage/env.py
--- src/sage/env.py.orig 2021-05-09 16:00:11.000000000 -0600
+++ src/sage/env.py 2021-06-02 17:13:07.387813291 -0600
@@ -194,7 +194,7 @@ CONWAY_POLYNOMIALS_DATA_DIR = var("CONWA
--- src/sage/env.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/env.py 2022-09-14 15:15:42.303907557 -0600
@@ -197,7 +197,7 @@ CONWAY_POLYNOMIALS_DATA_DIR = var("CONWA
GRAPHS_DATA_DIR = var("GRAPHS_DATA_DIR", join(SAGE_SHARE, "graphs"))
ELLCURVE_DATA_DIR = var("ELLCURVE_DATA_DIR", join(SAGE_SHARE, "ellcurves"))
POLYTOPE_DATA_DIR = var("POLYTOPE_DATA_DIR", join(SAGE_SHARE, "reflexive_polytopes"))
@ -10,10 +123,264 @@ diff -up src/sage/env.py.orig src/sage/env.py
THEBE_DIR = var("THEBE_DIR", join(SAGE_SHARE, "thebe"))
COMBINATORIAL_DESIGN_DATA_DIR = var("COMBINATORIAL_DESIGN_DATA_DIR", join(SAGE_SHARE, "combinatorial_designs"))
CREMONA_MINI_DATA_DIR = var("CREMONA_MINI_DATA_DIR", join(SAGE_SHARE, "cremona"))
diff -up src/sage/groups/abelian_gps/abelian_group_gap.py.orig src/sage/groups/abelian_gps/abelian_group_gap.py
--- src/sage/groups/abelian_gps/abelian_group_gap.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/groups/abelian_gps/abelian_group_gap.py 2022-09-14 15:23:05.702338312 -0600
@@ -338,7 +338,7 @@ class AbelianGroup_gap(UniqueRepresentat
if isinstance(x, AbelianGroupElement_gap):
try:
if x in self._cover:
- x = self.gap().NaturalHomomorphism().Image(x.gap())
+ x = self._cover.gap().NaturalHomomorphismByNormalSubgroup(self._relations).Image(x.gap())
else:
x = x.gap()
except AttributeError:
@@ -1043,7 +1043,7 @@ class AbelianGroupQuotient_gap(AbelianGr
From: Abelian group with gap, generator orders (4,)
To: Quotient abelian group with generator orders (2,)
"""
- phi = self.gap().NaturalHomomorphism()
+ phi = self._cover.gap().NaturalHomomorphismByNormalSubgroup(self._relations)
Hom = self._cover.Hom(self)
return Hom(phi)
diff -up src/sage/groups/finitely_presented.py.orig src/sage/groups/finitely_presented.py
--- src/sage/groups/finitely_presented.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/groups/finitely_presented.py 2022-09-14 15:36:48.057159029 -0600
@@ -596,9 +596,9 @@ class RewritingSystem(object):
sage: k=G.rewriting_system()
sage: k.gap()
Knuth Bendix Rewriting System for Monoid( [ a, A, b, B ] ) with rules
- [ [ a^2, <identity ...> ], [ a*A, <identity ...> ],
- [ A*a, <identity ...> ], [ b^2, <identity ...> ],
- [ b*B, <identity ...> ], [ B*b, <identity ...> ] ]
+ [ [ a*A, <identity ...> ], [ A*a, <identity ...> ],
+ [ b*B, <identity ...> ], [ B*b, <identity ...> ],
+ [ a^2, <identity ...> ], [ b^2, <identity ...> ] ]
"""
return self._gap
diff -up src/sage/groups/fqf_orthogonal.py.orig src/sage/groups/fqf_orthogonal.py
--- src/sage/groups/fqf_orthogonal.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/groups/fqf_orthogonal.py 2022-09-14 15:37:12.377242440 -0600
@@ -143,7 +143,7 @@ class FqfOrthogonalGroup(AbelianGroupAut
[2/3 0 0]
[ 0 2/3 0]
[ 0 0 4/3]
- generated by 2 elements
+ generated by 3 elements
sage: q = matrix.diagonal(QQ, [3/2, 1/4, 1/4])
sage: T = TorsionQuadraticForm(q)
sage: T.orthogonal_group().order()
diff -up src/sage/groups/libgap_wrapper.pyx.orig src/sage/groups/libgap_wrapper.pyx
--- src/sage/groups/libgap_wrapper.pyx.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/groups/libgap_wrapper.pyx 2022-09-14 15:37:50.457373037 -0600
@@ -25,7 +25,7 @@ Note how we call the constructor of both
its output via LibGAP::
sage: FooGroup()
- <pc group of size 3 with 1 generators>
+ <pc group of size 3 with 1 generator>
sage: type(FooGroup().gap())
<class 'sage.libs.gap.element.GapElement'>
@@ -106,7 +106,7 @@ class ParentLibGAP(SageObject):
....: ParentLibGAP.__init__(self, lg)
....: Group.__init__(self)
sage: FooGroup()
- <pc group of size 3 with 1 generators>
+ <pc group of size 3 with 1 generator>
"""
def __init__(self, libgap_parent, ambient=None):
@@ -461,7 +461,7 @@ cdef class ElementLibGAP(MultiplicativeG
....: ParentLibGAP.__init__(self, lg)
....: Group.__init__(self)
sage: FooGroup()
- <pc group of size 3 with 1 generators>
+ <pc group of size 3 with 1 generator>
sage: FooGroup().gens()
(f1,)
"""
diff -up src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx.orig src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx
--- src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx 2022-09-14 15:39:54.849811749 -0600
@@ -427,7 +427,7 @@ cdef class LabelledBranching:
sage: from sage.groups.perm_gps.partn_ref2.refinement_generic import LabelledBranching
sage: L = LabelledBranching(3)
sage: L.small_generating_set()
- []
+ [()]
sage: L.add_gen(libgap.eval('(1,2,3)'))
sage: L.small_generating_set()
[(1,2,3)]
diff -up src/sage/groups/perm_gps/permgroup.py.orig src/sage/groups/perm_gps/permgroup.py
--- src/sage/groups/perm_gps/permgroup.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/groups/perm_gps/permgroup.py 2022-09-14 16:03:50.495931767 -0600
@@ -875,7 +875,7 @@ class PermutationGroup_generic(FiniteGro
sage: f=PG._coerce_map_from_(MG)
sage: mg = MG.an_element()
sage: p = f(mg); p
- (2,33,32,23,31,55)(3,49,38,44,40,28)(4,17,59,62,58,46)(5,21,47,20,43,8)(6,53,50)(7,37,12,57,14,29)(9,41,56,34,64,10)(11,25,19)(13,61,26,51,22,15)(16,45,36)(18,27,35,48,52,54)(24,63,42)(30,39,60)
+ (1,2,6,19,35,33)(3,9,26,14,31,23)(4,13,5)(7,22,17)(8,24,12)(10,16,32,27,20,28)(11,30,18)(15,25,36,34,29,21)
sage: PG(p._gap_()) == p
True
@@ -921,12 +921,12 @@ class PermutationGroup_generic(FiniteGro
sage: P = G.as_permutation_group(algorithm='smaller', seed=5)
sage: P1 = G.as_permutation_group()
sage: P == P1
- False
+ True
sage: g1, g2, g3 = G.gens()
sage: P(g1*g2)
- (1,3,7,12)(2,4,8,10)(5,11)(6,9)
+ (1,4,13,11)(2,5,14,18)(3,15,8,16)(6,7)(9,20,19,12)(10,17)
sage: P1(g1*g2)
- (2,29,25,68)(3,57,13,54)(4,11,72,37)(5,39,60,23)(6,64,75,63)(7,21,50,73)(8,46,38,32)(9,74,35,18)(10,44,49,48)(12,16,34,71)(14,79,27,40)(15,26)(17,62,59,76)(19,78,70,65)(20,22,58,51)(24,33,36,43)(28,81,80,52)(30,53,56,69)(31,61)(41,42,67,55)(45,77)(47,66)
+ (1,4,13,11)(2,5,14,18)(3,15,8,16)(6,7)(9,20,19,12)(10,17)
Another check for :trac:`5583`::
@@ -4291,7 +4291,7 @@ class PermutationGroup_generic(FiniteGro
sage: G = PermutationGroup([[(1,2,3,4,5)],[(1,2)]]) #S_5 on [1..5]
sage: G.is_transitive([1,4,5])
- True
+ False
sage: G.is_transitive([2..6])
False
sage: G.is_transitive(G.non_fixed_points())
@@ -4355,7 +4355,7 @@ class PermutationGroup_generic(FiniteGro
sage: G.is_primitive([1..4])
False
sage: G.is_primitive([1,2,3])
- True
+ False
sage: G = PermutationGroup([[(3,4,5,6)],[(3,4)]]) #S_4 on [3..6]
sage: G.is_primitive(G.non_fixed_points())
True
diff -up src/sage/interfaces/gap.py.orig src/sage/interfaces/gap.py
--- src/sage/interfaces/gap.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/interfaces/gap.py 2022-09-14 15:21:29.734019419 -0600
@@ -1490,6 +1490,8 @@ def gap_reset_workspace(max_workspace_si
"""
# Create new workspace with filename WORKSPACE
g = Gap(use_workspace_cache=False, max_workspace_size=None)
+ g.eval('ColorPrompt(false)')
+ g.eval('SetUserPreference("UseColorPrompt", false)')
g.eval('SetUserPreference("HistoryMaxLines", 30)')
from sage.tests.gap_packages import all_installed_packages
for pkg in all_installed_packages(gap=g):
diff -up src/sage/libs/gap/element.pxd.orig src/sage/libs/gap/element.pxd
--- src/sage/libs/gap/element.pxd.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/libs/gap/element.pxd 2022-09-27 18:35:39.449724078 -0600
@@ -29,9 +29,9 @@ cdef GapElement_Boolean make_GapElement_
cdef GapElement_Function make_GapElement_Function(parent, Obj obj)
cdef GapElement_Permutation make_GapElement_Permutation(parent, Obj obj)
-cdef char *capture_stdout(Obj, Obj)
-cdef char *gap_element_str(Obj)
-cdef char *gap_element_repr(Obj)
+cdef str capture_stdout(Obj, Obj)
+cdef str gap_element_str(Obj)
+cdef str gap_element_repr(Obj)
cdef class GapElement(RingElement):
diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
--- src/sage/libs/gap/element.pyx.orig 2021-05-09 16:00:11.000000000 -0600
+++ src/sage/libs/gap/element.pyx 2021-05-28 11:43:51.678593573 -0600
@@ -264,7 +264,7 @@ cdef Obj make_gap_string(sage_string) ex
--- src/sage/libs/gap/element.pyx.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/libs/gap/element.pyx 2022-09-27 18:46:41.755240259 -0600
@@ -120,7 +120,7 @@ cdef Obj make_gap_matrix(sage_list, gap_
return l.value
-cdef char *capture_stdout(Obj func, Obj obj):
+cdef str capture_stdout(Obj func, Obj obj):
"""
Call a single-argument GAP function ``func`` with the argument ``obj``
and return the stdout from that function call.
@@ -130,6 +130,7 @@ cdef char *capture_stdout(Obj func, Obj
"""
cdef Obj s, stream, output_text_string
cdef UInt res
+ cdef TypOutputFile output
# The only way to get a string representation of an object that is truly
# consistent with how it would be represented at the GAP REPL is to call
# ViewObj on it. Unfortunately, ViewObj *prints* to the output stream,
@@ -139,36 +140,35 @@ cdef char *capture_stdout(Obj func, Obj
# that does not give consistent results.
# TODO: This is probably needlessly slow, but we might need better
# support from GAP to improve this...
- try:
- GAP_Enter()
- s = NEW_STRING(0)
- output_text_string = GAP_ValueGlobalVariable("OutputTextString")
- stream = CALL_2ARGS(output_text_string, s, GAP_True)
+ s = NEW_STRING(0)
+ output_text_string = GAP_ValueGlobalVariable("OutputTextString")
+ stream = CALL_2ARGS(output_text_string, s, GAP_True)
- if not OpenOutputStream(stream):
- raise GAPError("failed to open output capture stream for "
- "representing GAP object")
+ if not OpenOutputStream(&output, stream):
+ raise GAPError("failed to open output capture stream for "
+ "representing GAP object")
- CALL_1ARGS(func, obj)
- CloseOutput()
- return CSTR_STRING(s)
- finally:
- GAP_Leave()
+ CALL_1ARGS(func, obj)
+ CloseOutput(&output)
+ return char_to_str(CSTR_STRING(s))
-cdef char *gap_element_repr(Obj obj):
+cdef str gap_element_repr(Obj obj):
"""
Implement ``repr()`` of ``GapElement``s using the ``ViewObj()`` function,
which is by default closest to what you get when displaying an object in
GAP on the command-line (i.e. when evaluating an expression that returns
that object.
"""
+ cdef Obj func
+ try:
+ GAP_Enter()
+ func = GAP_ValueGlobalVariable("ViewObj")
+ return capture_stdout(func, obj)
+ finally:
+ GAP_Leave()
- cdef Obj func = GAP_ValueGlobalVariable("ViewObj")
- return capture_stdout(func, obj)
-
-
-cdef char *gap_element_str(Obj obj):
+cdef str gap_element_str(Obj obj):
"""
Implement ``str()`` of ``GapElement``s using the ``Print()`` function.
@@ -178,9 +178,13 @@ cdef char *gap_element_str(Obj obj):
slightly different approach more closely mirroring Python's str/repr
difference (though this does not map perfectly onto GAP).
"""
- cdef Obj func = GAP_ValueGlobalVariable("Print")
- return capture_stdout(func, obj)
-
+ cdef Obj func
+ try:
+ GAP_Enter()
+ func = GAP_ValueGlobalVariable("Print")
+ return capture_stdout(func, obj)
+ finally:
+ GAP_Leave()
cdef Obj make_gap_record(sage_dict) except NULL:
"""
@@ -264,7 +268,7 @@ cdef Obj make_gap_string(sage_string) ex
try:
GAP_Enter()
b = str_to_bytes(sage_string)
@ -22,7 +389,25 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
return result
finally:
GAP_Leave()
@@ -955,7 +955,7 @@ cdef class GapElement(RingElement):
@@ -760,7 +764,7 @@ cdef class GapElement(RingElement):
if self.value == NULL:
return 'NULL'
- s = char_to_str(gap_element_str(self.value))
+ s = gap_element_str(self.value)
return s.strip()
def _repr_(self):
@@ -782,7 +786,7 @@ cdef class GapElement(RingElement):
if self.value == NULL:
return 'NULL'
- s = char_to_str(gap_element_repr(self.value))
+ s = gap_element_repr(self.value)
return s.strip()
cpdef _set_compare_by_id(self):
@@ -955,7 +959,7 @@ cdef class GapElement(RingElement):
sig_on()
try:
GAP_Enter()
@ -31,7 +416,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
finally:
GAP_Leave()
sig_off()
@@ -977,7 +977,7 @@ cdef class GapElement(RingElement):
@@ -977,7 +981,7 @@ cdef class GapElement(RingElement):
sig_on()
try:
GAP_Enter()
@ -40,7 +425,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
finally:
GAP_Leave()
sig_off()
@@ -1205,7 +1205,7 @@ cdef class GapElement(RingElement):
@@ -1205,7 +1209,7 @@ cdef class GapElement(RingElement):
sage: a.is_function()
False
"""
@ -49,7 +434,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
def is_list(self):
r"""
@@ -1222,7 +1222,7 @@ cdef class GapElement(RingElement):
@@ -1222,7 +1226,7 @@ cdef class GapElement(RingElement):
sage: libgap.eval('3/2').is_list()
False
"""
@ -58,7 +443,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
def is_record(self):
r"""
@@ -1239,7 +1239,7 @@ cdef class GapElement(RingElement):
@@ -1239,7 +1243,7 @@ cdef class GapElement(RingElement):
sage: libgap.eval('rec(a:=1, b:=3)').is_record()
True
"""
@ -67,7 +452,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
cpdef is_bool(self):
r"""
@@ -1272,7 +1272,7 @@ cdef class GapElement(RingElement):
@@ -1272,7 +1276,7 @@ cdef class GapElement(RingElement):
sage: libgap('this is a string').is_string()
True
"""
@ -76,7 +461,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
def is_permutation(self):
r"""
@@ -1469,7 +1469,7 @@ cdef class GapElement_Integer(GapElement
@@ -1469,7 +1473,7 @@ cdef class GapElement_Integer(GapElement
sage: N.IsInt()
true
"""
@ -85,7 +470,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
def _rational_(self):
r"""
@@ -2808,7 +2808,7 @@ cdef class GapElement_List(GapElement):
@@ -2806,7 +2810,7 @@ cdef class GapElement_List(GapElement):
...
ValueError: too many indices
"""
@ -94,7 +479,7 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
cdef Obj obj = self.value
if isinstance(i, tuple):
@@ -2879,7 +2879,7 @@ cdef class GapElement_List(GapElement):
@@ -2877,7 +2881,7 @@ cdef class GapElement_List(GapElement):
if not IS_MUTABLE_OBJ(self.value):
raise TypeError('immutable Gap object does not support item assignment')
@ -104,8 +489,8 @@ diff -up src/sage/libs/gap/element.pyx.orig src/sage/libs/gap/element.pyx
if isinstance(i, tuple):
diff -up src/sage/libs/gap/gap_includes.pxd.orig src/sage/libs/gap/gap_includes.pxd
--- src/sage/libs/gap/gap_includes.pxd.orig 2021-05-09 16:00:11.000000000 -0600
+++ src/sage/libs/gap/gap_includes.pxd 2021-05-28 11:43:51.679593573 -0600
--- src/sage/libs/gap/gap_includes.pxd.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/libs/gap/gap_includes.pxd 2022-09-14 15:19:47.996693822 -0600
@@ -13,8 +13,8 @@ from libc.stdint cimport uintptr_t, uint
cdef extern from "gap/system.h" nogil:
@ -146,7 +531,7 @@ diff -up src/sage/libs/gap/gap_includes.pxd.orig src/sage/libs/gap/gap_includes.
void AssGVar "AssGVar"(UInt gvar, Obj val)
@@ -70,7 +70,7 @@ cdef extern from "gap/integer.h" nogil:
@@ -70,14 +70,16 @@ cdef extern from "gap/integer.h" nogil:
cdef extern from "gap/intobj.h" nogil:
@ -155,7 +540,18 @@ diff -up src/sage/libs/gap/gap_includes.pxd.orig src/sage/libs/gap/gap_includes.
Obj INTOBJ_INT(Int)
Int INT_INTOBJ(Obj)
@@ -100,11 +100,11 @@ cdef extern from "gap/libgap-api.h" nogi
cdef extern from "gap/io.h" nogil:
- UInt OpenOutputStream(Obj stream)
- UInt CloseOutput()
+ ctypedef struct TypOutputFile:
+ pass
+ UInt OpenOutputStream(TypOutputFile* output, Obj stream)
+ UInt CloseOutput(TypOutputFile* output)
cdef extern from "gap/libgap-api.h" nogil:
@@ -100,11 +102,11 @@ cdef extern from "gap/libgap-api.h" nogi
cdef extern from "gap/lists.h" nogil:
@ -172,7 +568,7 @@ diff -up src/sage/libs/gap/gap_includes.pxd.orig src/sage/libs/gap/gap_includes.
cdef extern from "gap/listfunc.h" nogil:
@@ -116,13 +116,13 @@ cdef extern from "gap/macfloat.h" nogil:
@@ -116,13 +118,13 @@ cdef extern from "gap/macfloat.h" nogil:
cdef extern from "gap/objects.h" nogil:
@ -189,7 +585,7 @@ diff -up src/sage/libs/gap/gap_includes.pxd.orig src/sage/libs/gap/gap_includes.
cdef enum TNUM:
T_INT
@@ -163,23 +163,23 @@ cdef extern from "gap/permutat.h" nogil:
@@ -163,23 +165,23 @@ cdef extern from "gap/permutat.h" nogil:
cdef extern from "gap/precord.h" nogil:
@ -224,10 +620,39 @@ diff -up src/sage/libs/gap/gap_includes.pxd.orig src/sage/libs/gap/gap_includes.
+ Int IsStringConv(Obj obj)
+ Obj NEW_STRING(Int len)
+ Obj MakeStringWithLen(const char *buf, size_t len)
diff -up src/sage/libs/gap/libgap.pyx.orig src/sage/libs/gap/libgap.pyx
--- src/sage/libs/gap/libgap.pyx.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/libs/gap/libgap.pyx 2022-09-14 15:43:04.473558811 -0600
@@ -691,7 +691,7 @@ class Gap(Parent):
sage: libgap.List
<Gap function "List">
sage: libgap.GlobalRandomSource
- <RandomSource in IsGlobalRandomSource>
+ <RandomSource in IsGAPRandomSource>
"""
if name in dir(self.__class__):
return getattr(self.__class__, name)
diff -up src/sage/libs/gap/util.pyx.orig src/sage/libs/gap/util.pyx
--- src/sage/libs/gap/util.pyx.orig 2021-05-09 16:00:11.000000000 -0600
+++ src/sage/libs/gap/util.pyx 2021-05-28 11:43:51.679593573 -0600
@@ -387,7 +387,7 @@ cdef Obj gap_eval(str gap_string) except
--- src/sage/libs/gap/util.pyx.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/libs/gap/util.pyx 2022-09-14 16:00:31.367311730 -0600
@@ -353,15 +353,9 @@ cdef Obj gap_eval(str gap_string) except
GAPError: Error, Variable: 'Complex' must have a value
Syntax error: ; expected in stream:1
Complex Field with 53 bits of precision;;
- ^^^^^^^^^^^^
+ ^^^^^
Error, Variable: 'with' must have a value
- Syntax error: ; expected in stream:1
- Complex Field with 53 bits of precision;;
- ^^^^^^^^^^^^^^^^^^^^
Error, Variable: 'bits' must have a value
- Syntax error: ; expected in stream:1
- Complex Field with 53 bits of precision;;
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
Error, Variable: 'precision' must have a value
Test that on a subsequent attempt we get the same message (no garbage was
@@ -379,7 +373,7 @@ cdef Obj gap_eval(str gap_string) except
"""
initialize()
cdef Obj result
@ -236,3 +661,15 @@ diff -up src/sage/libs/gap/util.pyx.orig src/sage/libs/gap/util.pyx
# Careful: We need to keep a reference to the bytes object here
# so that Cython doesn't deallocate it before GAP is done with
diff -up src/sage/tests/gap_packages.py.orig src/sage/tests/gap_packages.py
--- src/sage/tests/gap_packages.py.orig 2022-05-15 16:11:11.000000000 -0600
+++ src/sage/tests/gap_packages.py 2022-09-14 16:00:53.429380443 -0600
@@ -103,7 +103,7 @@ def all_installed_packages(ignore_dot_ga
sage: from sage.tests.gap_packages import all_installed_packages
sage: all_installed_packages()
- (...'GAPDoc'...)
+ (...'gapdoc'...)
sage: all_installed_packages(ignore_dot_gap=True) == all_installed_packages(gap=gap, ignore_dot_gap=True)
True
"""

34
sagemath.spec
View file

@ -84,7 +84,7 @@
Name: sagemath
Summary: A free open-source mathematics software system
Version: 9.6
Release: 5%{?dist}
Release: 6%{?dist}
# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
# Additionally, every $files section has a comment with the license name
# before files with that license
@ -353,7 +353,6 @@ BuildRequires: python3-pplpy-devel
BuildRequires: python3-tdlib-devel
BuildRequires: python3-tkinter
BuildRequires: pythran
BuildRequires: %{py3_dist argcomplete}
BuildRequires: %{py3_dist argon2-cffi}
%if %{with bundled_ipython}
BuildRequires: %{py3_dist backcall}
@ -561,7 +560,6 @@ Requires: pari-gp
Requires: pari-nftables
Requires: pari-seadata
Requires: python3-tdlib
Requires: %{py3_dist argcomplete}
%if %{with bundled_ipython}
Requires: %{py3_dist backcall}
%endif
@ -957,34 +955,11 @@ pushd build/pkgs/threejs
popd
%endif
%patch0
%patch1
%patch2
%patch3
%patch4
%patch5
%patch6
%patch7
%patch8
%patch9
%patch10
%patch11
%patch12
%autopatch -p0 -M12
%if %{with fes}
%patch13
%endif
%patch14
%patch15
%patch16
%patch17
%patch18
%patch19
%patch20
%patch21
%patch22
%patch23
%autopatch -p0 -m14
sed -i 's|@@SAGE_LOCAL@@|%{SAGE_LOCAL}|' src/sage/env.py
@ -2040,6 +2015,9 @@ end
########################################################################
%changelog
* Wed Sep 21 2022 Jerry James <loganjerry@gmail.com> - 9.6-6
- Rebuild for gap 4.12.0 and pari 2.15.0
* Tue Aug 23 2022 Mamoru TASAKA <mtasaka@fedoraproject.org> - 9.6-5
- Rebuild for gsl-2.7.1