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Update to sagemath 8.5.

Browse source 
Also:
- Bundle ipython again; Fedora version is too far ahead.  Also have to bundle
  prompt_toolkit since Fedora version is too far ahead of bundled ipython.
- Drop LANGUAGES variable setting, now ignored by the sagemath build system.
- Drop unused SAGE_CBLAS variable from /usr/bin/sage.
- Do not force the C locale when launching sagemath.
- Allow the user to override SAGE_DEBUG in /usr/bin/sage.
- Add -ecm, -giac, and -latte patches to fix interactions with external tools.
- Add -sigfpe patch from upstream.
This commit is contained in:
Jerry James 2019-01-17 19:27:08 -07:00
parent eaa777c690
commit 55beead27c
31 changed files with 674 additions and 684 deletions
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36
sagemath-arb.patch
View file

@ -1,6 +1,6 @@
diff -up src/sage/libs/arb/acb_hypgeom.pxd.orig src/sage/libs/arb/acb_hypgeom.pxd
--- src/sage/libs/arb/acb_hypgeom.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/acb_hypgeom.pxd 2018-08-29 10:43:48.572622995 -0600
--- src/sage/libs/arb/acb_hypgeom.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/acb_hypgeom.pxd 2019-01-16 09:46:54.148469344 -0700
@@ -2,7 +2,7 @@
from sage.libs.arb.types cimport *
@ -11,8 +11,8 @@ diff -up src/sage/libs/arb/acb_hypgeom.pxd.orig src/sage/libs/arb/acb_hypgeom.px
long acb_hypgeom_pfq_choose_n(acb_srcptr a, long p, acb_srcptr b, long q, const acb_t z, long prec)
void acb_hypgeom_pfq_sum_forward(acb_t s, acb_t t, acb_srcptr a, long p, acb_srcptr b, long q, const acb_t z, long n, long prec)
diff -up src/sage/libs/arb/acb_mat.pxd.orig src/sage/libs/arb/acb_mat.pxd
--- src/sage/libs/arb/acb_mat.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/acb_mat.pxd 2018-08-29 10:43:48.572622995 -0600
--- src/sage/libs/arb/acb_mat.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/acb_mat.pxd 2019-01-16 09:46:54.148469344 -0700
@@ -1,6 +1,6 @@
from sage.libs.arb.types cimport acb_t, acb_mat_t, acb_poly_t
@ -22,8 +22,8 @@ diff -up src/sage/libs/arb/acb_mat.pxd.orig src/sage/libs/arb/acb_mat.pxd
unsigned int acb_mat_ncols(acb_mat_t mat)
acb_t acb_mat_entry(acb_mat_t mat, unsigned long i, unsigned long j)
diff -up src/sage/libs/arb/acb_modular.pxd.orig src/sage/libs/arb/acb_modular.pxd
--- src/sage/libs/arb/acb_modular.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/acb_modular.pxd 2018-08-29 10:43:48.572622995 -0600
--- src/sage/libs/arb/acb_modular.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/acb_modular.pxd 2019-01-16 09:46:54.149469326 -0700
@@ -3,7 +3,7 @@
from sage.libs.arb.types cimport *
from sage.libs.flint.types cimport fmpz_poly_t
@ -34,8 +34,8 @@ diff -up src/sage/libs/arb/acb_modular.pxd.orig src/sage/libs/arb/acb_modular.px
void acb_modular_j(acb_t z, const acb_t tau, long prec)
void acb_modular_eta(acb_t z, const acb_t tau, long prec)
diff -up src/sage/libs/arb/acb_poly.pxd.orig src/sage/libs/arb/acb_poly.pxd
--- src/sage/libs/arb/acb_poly.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/acb_poly.pxd 2018-08-29 10:43:48.572622995 -0600
--- src/sage/libs/arb/acb_poly.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/acb_poly.pxd 2019-01-16 09:46:54.149469326 -0700
@@ -3,7 +3,7 @@
from sage.libs.arb.types cimport *
from sage.libs.flint.types cimport fmpz_poly_t, fmpq_poly_t
@ -46,8 +46,8 @@ diff -up src/sage/libs/arb/acb_poly.pxd.orig src/sage/libs/arb/acb_poly.pxd
void acb_poly_clear(acb_poly_t poly)
void acb_poly_fit_length(acb_poly_t poly, long len)
diff -up src/sage/libs/arb/acb.pxd.orig src/sage/libs/arb/acb.pxd
--- src/sage/libs/arb/acb.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/acb.pxd 2018-08-29 10:43:48.571623007 -0600
--- src/sage/libs/arb/acb.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/acb.pxd 2019-01-16 09:46:54.149469326 -0700
@@ -3,7 +3,7 @@
from sage.libs.arb.types cimport *
from sage.libs.flint.types cimport fmpz_t, fmpq_t
@ -58,8 +58,8 @@ diff -up src/sage/libs/arb/acb.pxd.orig src/sage/libs/arb/acb.pxd
arb_t acb_realref(acb_t x)
arb_t acb_imagref(acb_t x)
diff -up src/sage/libs/arb/arf.pxd.orig src/sage/libs/arb/arf.pxd
--- src/sage/libs/arb/arf.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/arf.pxd 2018-08-29 10:43:48.572622995 -0600
--- src/sage/libs/arb/arf.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/arf.pxd 2019-01-16 09:46:54.149469326 -0700
@@ -5,7 +5,7 @@ from sage.libs.gmp.types cimport mpz_t
from sage.libs.flint.types cimport fmpz_t
from sage.libs.mpfr.types cimport mpfr_t, mpfr_rnd_t
@ -70,8 +70,8 @@ diff -up src/sage/libs/arb/arf.pxd.orig src/sage/libs/arb/arf.pxd
void arf_clear(arf_t x)
void arf_zero(arf_t x)
diff -up src/sage/libs/arb/bernoulli.pxd.orig src/sage/libs/arb/bernoulli.pxd
--- src/sage/libs/arb/bernoulli.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/bernoulli.pxd 2018-08-29 10:43:48.572622995 -0600
--- src/sage/libs/arb/bernoulli.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/bernoulli.pxd 2019-01-16 09:46:54.149469326 -0700
@@ -2,5 +2,5 @@
from ..flint.types cimport fmpq_t, ulong
@ -80,8 +80,8 @@ diff -up src/sage/libs/arb/bernoulli.pxd.orig src/sage/libs/arb/bernoulli.pxd
+cdef extern from "arb/bernoulli.h":
void bernoulli_fmpq_ui(fmpq_t b, ulong n)
diff -up src/sage/libs/arb/mag.pxd.orig src/sage/libs/arb/mag.pxd
--- src/sage/libs/arb/mag.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/mag.pxd 2018-08-29 10:43:48.573622983 -0600
--- src/sage/libs/arb/mag.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/mag.pxd 2019-01-16 09:46:54.150469309 -0700
@@ -3,7 +3,7 @@
from sage.libs.arb.types cimport *
from sage.libs.flint.types cimport fmpz_t, fmpq_t
@ -92,8 +92,8 @@ diff -up src/sage/libs/arb/mag.pxd.orig src/sage/libs/arb/mag.pxd
void mag_clear(mag_t x)
void mag_init_set(mag_t x, const mag_t y)
diff -up src/sage/libs/arb/types.pxd.orig src/sage/libs/arb/types.pxd
--- src/sage/libs/arb/types.pxd.orig 2018-08-03 05:10:08.000000000 -0600
+++ src/sage/libs/arb/types.pxd 2018-08-29 10:43:48.573622983 -0600
--- src/sage/libs/arb/types.pxd.orig 2018-12-22 16:37:08.000000000 -0700
+++ src/sage/libs/arb/types.pxd 2019-01-16 09:46:54.150469309 -0700
@@ -1,4 +1,4 @@
-cdef extern from "mag.h":
+cdef extern from "arb/mag.h":