mirror of
https://src.fedoraproject.org/rpms/sagemath.git
synced 2025-04-22 11:45:56 -04:00
Update to sagemath 8.8 (bz 1724394).
Also: - Remove configparser dependencies (bz 1706597). - Fix broken sed conversion (bz 1706234). - Fix python2 versus python3 snafu (bz 1706337, 1707166). - Build and install sagetex (bz 1706322).
This commit is contained in:
Jerry James
parent
05337076b6
commit
5a519c8e85
15 changed files with 277 additions and 497 deletions
136
sagemath.spec
136
sagemath.spec
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@ -40,15 +40,18 @@
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%global combinatorial_designs_pkg combinatorial_designs-20140630
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%global conway_polynomials_pkg conway_polynomials-0.5
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%global elliptic_curves_pkg elliptic_curves-0.8
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%global elliptic_curves_pkg elliptic_curves-0.8.1
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%global flintqs_pkg flintqs-1.0
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%global graphs_pkg graphs-20161026
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%if %{with bundled_ipython}
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%global ipython_pkg ipython-5.8.0
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%global prompt_tookit_pkg prompt_toolkit-1.0.15
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%global ipython_ver 5.8.0
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%global ipython_pkg ipython-%{ipython_ver}
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%global prompt_toolkit_ver 1.0.15
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%global prompt_tookit_pkg prompt_toolkit-%{prompt_toolkit_ver}
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%endif
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%if %{with bundled_ipywidgets}
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%global ipywidgets_pkg ipywidgets-7.4.2
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%global ipywidgets_ver 7.4.2
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%global ipywidgets_pkg ipywidgets-%{ipywidgets_ver}
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%endif
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%if %{with bundled_pexpect}
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%global pexpect_pkg pexpect-4.6.0
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@ -58,16 +61,19 @@
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%global sagenb_pkg sagenb-1.1.2
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%global sagenb_export_pkg sagenb_export-3.2
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%global sagetex_pkg sagetex-3.2
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%global Sphinx_pkg Sphinx-1.7.6
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%global Sphinx_pkg Sphinx-1.8.5
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%global singular_pkg singular-4.1.1p3
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%if %{with bundled_thebe}
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%global thebe_pkg thebe-9624e0a0
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%global thebe_ver 9624e0a0
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%global thebe_pkg thebe-%{thebe_ver}
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%endif
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%if %{with bundled_threejs}
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%global threejs_pkg threejs-r80
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%global threejs_ver r100
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%global threejs_pkg threejs-%{threejs_ver}
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%endif
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%if %{with bundled_widgetsnbextension}
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%global widgetsnbextension_pkg widgetsnbextension-3.4.2
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%global widgetsnbextension_ver 3.4.2
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%global widgetsnbextension_pkg widgetsnbextension-%{widgetsnbextension_ver}
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%endif
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# Spkg equivalents of required rpms; we pretend they are installed as spkgs.
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@ -86,7 +92,7 @@
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Name: sagemath
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Summary: A free open-source mathematics software system
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Version: 8.7
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Version: 8.8
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Release: 1%{?dist}
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# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
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# Additionally, every $files section has a comment with the license name
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@ -108,7 +114,6 @@ Patch1: %{name}-random.patch
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Patch2: %{name}-scripts.patch
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# remove call to not implemented sagemath "is_package_installed" interfaces
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# need to package coin-or solver in fedora
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# remove check for non free solvers
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Patch3: %{name}-extensions.patch
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@ -148,8 +153,6 @@ Patch11: %{name}-cremona.patch
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Patch12: %{name}-python3.patch
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# correct path to the nauty geng program
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# http://cs.anu.edu.au/~bdm/nauty/
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# http://pallini.di.uniroma1.it/
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Patch13: %{name}-nauty.patch
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# remove the buildroot path from Cython output
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@ -204,6 +207,9 @@ Patch29: %{name}-rubiks.patch
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# Fix an indentation error in sagetex
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Patch30: %{name}-sagetex.patch
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# Fix some path settings in the sage environment
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Patch31: %{name}-env.patch
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BuildRequires: 4ti2
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BuildRequires: arb-devel
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BuildRequires: boost-devel
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@ -228,10 +234,14 @@ BuildRequires: gap-pkg-crime
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BuildRequires: gap-pkg-design
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BuildRequires: gap-pkg-guava
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BuildRequires: gap-pkg-hapcryst
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BuildRequires: gap-pkg-happrime
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BuildRequires: gap-pkg-sonata
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BuildRequires: gap-pkg-toric
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BuildRequires: gc-devel
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BuildRequires: gcc-c++
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BuildRequires: gcc-gfortran
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BuildRequires: gcc-objc
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BuildRequires: gcc-objc++
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BuildRequires: gd-devel
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BuildRequires: gdb
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BuildRequires: gfan
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@ -272,6 +282,7 @@ BuildRequires: pari-devel
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BuildRequires: pari-galdata
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BuildRequires: pari-gp
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BuildRequires: pari-seadata
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BuildRequires: perl-generators
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BuildRequires: planarity-devel
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BuildRequires: ppl-devel
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BuildRequires: pynac-devel
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@ -281,9 +292,6 @@ BuildRequires: python3-cysignals-devel
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BuildRequires: python3-pillow-devel
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BuildRequires: python3-pplpy-devel
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BuildRequires: python3dist(brial)
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%if %{with sphinx_hack}
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BuildRequires: python3dist(configparser)
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%endif
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BuildRequires: python3dist(cvxopt)
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BuildRequires: python3dist(cython)
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BuildRequires: python3dist(docutils)
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@ -320,7 +328,7 @@ BuildRequires: python3dist(psutil)
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BuildRequires: python3dist(ptyprocess)
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BuildRequires: python3dist(pycryptosat)
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%if %{with bundled_ipython}
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BuildRequires: python3dist(pyzmq)
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BuildRequires: python3dist(pyzmq)
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%endif
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BuildRequires: python3dist(rpy2)
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BuildRequires: python3dist(scipy)
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@ -368,6 +376,7 @@ Requires: gap-pkg-crime
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Requires: gap-pkg-design
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Requires: gap-pkg-guava
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Requires: gap-pkg-hapcryst
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Requires: gap-pkg-happrime
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Requires: gap-pkg-sonata
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Requires: gap-pkg-toric
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Requires: gfan
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@ -387,9 +396,6 @@ Requires: pari-galdata
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Requires: pari-gp
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Requires: pari-seadata
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Requires: python3dist(brial)
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%if %{with sphinx_hack}
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Requires: python3dist(configparser)
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%endif
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Requires: python3dist(cypari2)
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Requires: python3dist(cysignals)
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Requires: python3dist(cvxopt)
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@ -460,10 +466,10 @@ Requires: texlive
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Requires: vecmath
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%if %{with bundled_thebe}
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Provides: bundled(thebe) = %(cut -d- -f2- <<< %{thebe_pkg})
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Provides: bundled(thebe) = %{thebe_ver}
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%endif
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%if %{with bundled_threejs}
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Provides: bundled(threejs) = %(cut -d- -f2- <<< %{threejs_pkg})
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Provides: bundled(threejs) = %{threejs_ver}
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%endif
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%description
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@ -476,14 +482,14 @@ packages into a common Python-based interface.
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Summary: Open Source Mathematics Software
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Requires: %{name}%{?_isa} = %{version}-%{release}
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%if %{with bundled_ipython}
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Provides: bundled(ipython) = %(cut -d- -f2- <<< %{ipython_pkg})
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Provides: bundled(prompt_toolkit) = %(cut -d- -f2- <<< %{prompt_tookit_pkg})
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Provides: bundled(ipython) = %{ipython_ver}
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Provides: bundled(prompt_toolkit) = %{prompt_toolkit_ver}
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%endif
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%if %{with bundled_ipywidgets}
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Provides: bundled(ipywidgets) = %(cut -d- -f2- <<< %{ipywidgets_pkg})
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Provides: bundled(ipywidgets) = %{ipywidgets_ver}
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%endif
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%if %{with bundled_widgetsnbextension}
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Provides: bundled(widgetsnbextension) = %(cut -d- -f2- <<< %{widgetsnbextension_pkg})
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Provides: bundled(widgetsnbextension) = %{widgetsnbextension_ver}
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%endif
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%description core
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@ -772,7 +778,7 @@ pushd build/pkgs/pexpect
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tar zxf ../../../upstream/%{pexpect_pkg}.tar.gz
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mv %{pexpect_pkg} src
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pushd src
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for diff in `ls ../patches/*.patch`; do
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for diff in ../patches/*.patch; do
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patch -p1 < $diff
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done
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popd
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@ -788,7 +794,7 @@ pushd build/pkgs/rubiks
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tar jxf ../../../upstream/%{rubiks_pkg}.tar.bz2
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mv %{rubiks_pkg} src
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pushd src
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for diff in `ls ../patches/*.patch`; do
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for diff in ../patches/*.patch; do
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patch -p1 < $diff
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done
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popd
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@ -808,7 +814,7 @@ pushd build/pkgs/sagetex
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tar zxf ../../../upstream/%{sagetex_pkg}.tar.gz
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mv %{sagetex_pkg} src
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# Fix the style file install path
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texmfdir=$(cut -d/ -f3- <<< "%{_texmf_main}")
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texmfdir=$(cut -d/ -f3- <<< "%{_texmf}")
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sed -i "s,share/texmf,$texmfdir," src/setup.py
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popd
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@ -818,7 +824,7 @@ pushd build/pkgs/sphinx
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tar zxf ../../../upstream/%{Sphinx_pkg}.tar.gz
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mv %{Sphinx_pkg} src
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pushd src
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for diff in `ls ../patches/*.patch`; do
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for diff in ../patches/*.patch; do
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patch -p1 < $diff
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done
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popd
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@ -884,9 +890,11 @@ popd
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%patch28
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%patch29
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%patch30
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%patch31
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sed -e 's|@@SAGE_ROOT@@|%{SAGE_ROOT}|' \
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-e 's|@@SAGE_DOC@@|%{SAGE_DOC}|' \
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-e 's|@@SAGE_LOCAL@@|%{SAGE_LOCAL}|' \
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-i src/sage/env.py
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sed -e 's|@@CYSIGNALS@@|%{python3_sitearch}/cysignals|' \
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@ -898,7 +906,7 @@ sed -e "/flask-oldsessions/d" \
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#------------------------------------------------------------------------
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# some .c files are not (re)generated
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find src/sage \( -name \*.pyx -o -name \*.pxd \) | xargs touch
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find src/sage \( -name \*.pyx -o -name \*.pxd \) -exec touch {} \+
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# remove bundled jar files before build
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rm build/pkgs/sagenb/src/sagenb/data/sage3d/lib/sage3d.jar
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@ -915,11 +923,15 @@ sed -e "s,\(SINGULAR_SO = \)SAGE.*,\1'%{_libdir}/libSingular-$singver.so'," \
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-i src/sage/env.py
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# fix shebangs; some paths contains spaces, so use the null byte facility
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grep -FrlZ '#!%{_bindir}/env python3' | \
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xargs -0 sed -i 's,#!%{_bindir}/env python3,#!%{__python3},g'
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grep -FrlZ '#!%{_bindir}/env python' | \
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xargs -0 sed -i 's,#!%{_bindir}/env python,#!%{__python3},'
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xargs -0 sed -i 's,#!%{_bindir}/env python,#!%{__python3},g'
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grep -FrlZ '#!%{_bindir}/env sage-system-python' | \
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xargs -0 sed -i 's,#!%{_bindir}/env sage-system-python,#!%{__python3},g'
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grep -FrlZ '#!%{_bindir}/env sage-python23' | \
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xargs -0 sed -i 's,#!%{_bindir}/env sage-python23,#!%{__python3},'
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grep -FrlZ 'sage-python23' | xargs -0 sed -i 's,sage-python23,#!%{__python3},'
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xargs -0 sed -i 's,#!%{_bindir}/env sage-python23,#!%{__python3},g'
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grep -FrlZ 'sage-python23' | xargs -0 sed -i 's,sage-python23,python3,g'
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grep -FrlZ '#!%{_bindir}/env' | \
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xargs -0 sed -i 's,#!%{_bindir}/env ,#!%{_bindir}/,'
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grep -rlZ '#!%{_bindir}/python$' | xargs -0 sed -i 's,#!%{_bindir}/python$,&3,'
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@ -938,7 +950,7 @@ sed -e "s|'%{_bindir}/env', 'which'|'%{_bindir}/which'|" \
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%endif
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# GAP does not have enough memory to load the entire workspace
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sed -i 's/64m/128m/' src/sage/libs/gap/util.pyx
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sed -i 's/64m/128m/' src/sage/interfaces/gap.py
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########################################################################
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@ -947,6 +959,7 @@ export CC=%{__cc}
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export CFLAGS="%{optflags}"
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export CXXFLAGS="%{optflags}"
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export SAGE_PYTHON_VERSION=3
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export SAGE_PYTHON3=yes
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export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
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export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
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# Avoid buildroot in gcc command line (use _builddir instead)
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@ -973,6 +986,22 @@ export PATH=%{buildroot}%{_bindir}:$PATH
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export PYTHON=%{_bindir}/python3
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export PYTHONPATH=%{buildroot}%{python3_sitearch}:$PYTHONPATH
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#------------------------------------------------------------------------
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# Generate sage-env-config
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sed -e 's,@prefix@,%{SAGE_LOCAL},' \
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-e 's,@CC@,gcc,' \
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-e 's,@CXX@,g++,' \
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-e 's,@FC@,gfortran,' \
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-e 's,@OBJC@,gcc,' \
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-e 's,@OBJCXX@,g++,' \
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-e 's,@SAGE_PYTHON_VERSION@,3,' \
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-e 's,@SAGE_GMP_PREFIX@,,' \
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-e 's,@SAGE_GMP_INCLUDE@,%{_includedir},' \
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-e 's,@SAGE_MPFR_PREFIX@,,' \
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-e 's,@SAGE_MPC_PREFIX@,,' \
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-e 's,@SAGE_NTL_PREFIX@,,' \
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src/bin/sage-env-config.in > src/bin/sage-env-config
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#------------------------------------------------------------------------
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# Save and update environment to generate bundled interfaces
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save_PATH=$PATH
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@ -1036,6 +1065,10 @@ pushd build/pkgs/sagenb_export/src
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%__python3 ./setup.py build
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popd
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pushd build/pkgs/sagetex/src
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%__python3 ./setup.py build
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popd
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#------------------------------------------------------------------------
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pushd build/pkgs/flintqs/src
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%configure
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@ -1088,7 +1121,7 @@ ln -sf %{_datadir} $SAGE_LOCAL/share
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#------------------------------------------------------------------------
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pushd src/ext
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mkdir -p $SAGE_ETC
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for dir in \
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for dir in \
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gap \
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graphs \
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images \
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@ -1159,6 +1192,7 @@ pushd src/bin
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ln -sf %{_bindir}/gp sage_pari
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ln -sf %{_bindir}/gap gap
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ln -sf %{_bindir}/gmp-ecm ecm
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rm -f sage-env-config.in
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popd
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popd
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install -p -m755 src/bin/sage $SAGE_LOCAL/bin
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@ -1260,7 +1294,7 @@ popd
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#------------------------------------------------------------------------
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pushd build/pkgs/sagetex/src
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%py3_install "--install-purelib=%{python3_sitearch}"
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mv %{buildroot}%{_texmf_main}/tex/latex/sagetex/CONTRIBUTORS \
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mv %{buildroot}%{_texmf}/tex/latex/sagetex/CONTRIBUTORS \
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%{buildroot}%{_docdir}/sagetex
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for file in PKG-INFO README; do
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install -p -m 0644 $file %{buildroot}%{_docdir}/sagetex/$file
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@ -1316,6 +1350,7 @@ export SAGE_SHARE="$SAGE_SHARE"
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export SAGE_EXTCODE="$SAGE_ETC"
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export SAGE_ETC="$SAGE_ETC"
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export SAGE_SRC="%{buildroot}%{SAGE_SRC}"
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export SAGE_PYTHON3=yes
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##export SAGE_DOC="$SAGE_DOC"
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##export SAGE_DOC_SRC="\$SAGE_DOC"
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##export SAGE_PKGS="\$SAGE_LOCAL/var/lib/sage/installed"
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@ -1330,11 +1365,10 @@ export SINGULAR_SO=%{_libdir}/libSingular-4.1.1.so
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export SAGE_FORTRAN=%{_bindir}/gfortran
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export SAGE_FORTRAN_LIB=\`gfortran --print-file-name=libgfortran.so\`
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export SYMPOW_DIR="\$DOT_SAGE/sympow"
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export LD_LIBRARY_PATH=\$SAGE_ROOT/lib:\$LD_LIBRARY_PATH
|
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# Required for sage -gdb
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: \${SAGE_DEBUG:=no}
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export SAGE_DEBUG
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||||
$SAGE_LOCAL/bin/sage "\$@"
|
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exec $SAGE_LOCAL/bin/sage "\$@"
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EOF
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#------------------------------------------------------------------------
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chmod +x %{buildroot}%{_bindir}/sage
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@ -1379,9 +1413,9 @@ pushd src/doc
|
|||
|
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%if %{with sphinx_hack}
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pushd ../../build/pkgs/sphinx/src
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%py3_build
|
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%py3_install "--install-purelib=%{python3_sitearch}"
|
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rm -f %{buildroot}%{_bindir}/sphinx*
|
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%py3_build
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%py3_install "--install-purelib=%{python3_sitearch}"
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rm -f %{buildroot}%{_bindir}/sphinx*
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popd
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%endif
|
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@ -1461,7 +1495,7 @@ EOF
|
|||
desktop-file-validate %{buildroot}%{_datadir}/applications/%{name}.desktop
|
||||
|
||||
# Fix permissions
|
||||
find %{buildroot} -name '*.so' | xargs chmod 755
|
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find %{buildroot} -name '*.so' -exec chmod 755 {} \+
|
||||
pushd %{buildroot}%{SAGE_LOCAL}/bin
|
||||
chmod 755 QuadraticSieve
|
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chmod 755 mcube dikcube cu2 size222 cubex optimal
|
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|
|
@ -1476,7 +1510,7 @@ done
|
|||
chmod -x %{buildroot}%{SAGE_DOC}/en/prep/media/Rplot001.png
|
||||
|
||||
# Documentation is not rebuilt (also corrects rpmlint warning of hidden file)
|
||||
find %{buildroot}%{SAGE_DOC} -name .buildinfo -exec rm {} \+
|
||||
find %{buildroot}%{SAGE_DOC} -name .buildinfo -delete
|
||||
rm -fr %{buildroot}%{SAGE_DOC}/output/inventory
|
||||
find %{buildroot}%{SAGE_DOC} -type d -name _sources -exec rm -fr {} \+
|
||||
%endif
|
||||
|
|
@ -1507,7 +1541,7 @@ done
|
|||
popd
|
||||
pushd %{buildroot}%{SAGE_SPKG_INST}
|
||||
for pkg in %{SAGE_REQUIRED_PKGS}; do
|
||||
mkdir $pkg
|
||||
mkdir $pkg
|
||||
done
|
||||
popd
|
||||
#------------------------------------------------------------------------
|
||||
|
|
@ -1519,7 +1553,7 @@ while [ \$# -gt 0 ]; do
|
|||
if [ x\$1 = x--no-version ]; then
|
||||
NOVERSION=true
|
||||
elif [ x\$1 = xinstalled ]; then
|
||||
INSTALLED=yes
|
||||
INSTALLED=yes
|
||||
fi
|
||||
shift
|
||||
done
|
||||
|
|
@ -1547,7 +1581,7 @@ chmod +x %{buildroot}%{SAGE_LOCAL}/bin/sage-list-packages
|
|||
|
||||
#------------------------------------------------------------------------
|
||||
# Byte compile python files in nonstandard places
|
||||
%py_byte_compile %{__python3} %{buildroot}%{_texmf_main}/tex/latex/sagetex
|
||||
%py_byte_compile %{__python3} %{buildroot}%{_texmf}/tex/latex/sagetex
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
# Jupyter integration
|
||||
|
|
@ -1829,11 +1863,19 @@ rm -fr $DOT_SAGE
|
|||
%files sagetex
|
||||
# GPLv2+
|
||||
%{python3_sitearch}/sagetex*
|
||||
%{_texmf_main}/tex/latex/sagetex
|
||||
%{python3_sitearch}/__pycache__/sagetex*
|
||||
%{_texmf}/tex/latex/sagetex
|
||||
%doc %{_docdir}/sagetex
|
||||
|
||||
########################################################################
|
||||
%changelog
|
||||
* Mon Jul 1 2019 Jerry James <loganjerry@gmail.com> - 8.8-1
|
||||
- Update to sagemath 8.8 (bz 1724394)
|
||||
- Remove configparser dependencies (bz 1706597)
|
||||
- Fix broken sed conversion (bz 1706234)
|
||||
- Fix python2 versus python3 snafu (bz 1706337, 1707166)
|
||||
- Build and install sagetex (bz 1706322)
|
||||
|
||||
* Sat Apr 27 2019 Jerry James <loganjerry@gmail.com> - 8.7-1
|
||||
- Update to sagemath 8.7
|
||||
- Drop upstreamed -giac patch
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue