Update to sagemath 6.4.1

This commit is contained in:
pcpa 2014-12-13 21:05:42 -02:00
parent 3e866bf86e
commit 738094a8d8
27 changed files with 276 additions and 12243 deletions

View file

@ -1,6 +1,6 @@
diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/flask_version/base.py.orig build/pkgs/sagenb/src/sagenb-0.10.8.2/flask_version/base.py
--- build/pkgs/sagenb/src/sagenb-0.10.8.2/flask_version/base.py.orig 2014-02-11 18:13:34.453086409 -0200
+++ build/pkgs/sagenb/src/sagenb-0.10.8.2/flask_version/base.py 2014-02-11 18:14:30.976088573 -0200
diff -up build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/flask_version/base.py.orig build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/flask_version/base.py
--- build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/flask_version/base.py.orig 2014-12-06 17:45:36.063723826 -0200
+++ build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/flask_version/base.py 2014-12-06 17:49:09.074731983 -0200
@@ -4,8 +4,6 @@ from functools import partial
from flask import Flask, Module, url_for, render_template, request, session, redirect, g, make_response, current_app
from decorators import login_required, guest_or_login_required, with_lock
@ -18,84 +18,55 @@ diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/flask_version/base.py.orig build/
self.config['SESSION_COOKIE_HTTPONLY'] = False
@@ -36,7 +33,7 @@ class SageNBFlask(Flask):
@@ -36,12 +33,12 @@ class SageNBFlask(Flask):
self.add_static_path('/javascript', DATA)
self.add_static_path('/static', DATA)
self.add_static_path('/java', DATA)
- self.add_static_path('/java/jmol', os.path.join(os.environ["SAGE_ROOT"],"local","share","jmol"))
+ self.add_static_path('/java/jmol', os.path.join(DATA, "jmol"))
- self.add_static_path('/jsmol', os.path.join(os.environ["SAGE_ROOT"],"local","share","jsmol"))
- self.add_static_path('/jsmol/js', os.path.join(os.environ["SAGE_ROOT"],"local","share","jsmol","js"))
- self.add_static_path('/j2s', os.path.join(os.environ["SAGE_ROOT"],"local","share","jsmol","j2s"))
- self.add_static_path('/jsmol/j2s', os.path.join(os.environ["SAGE_ROOT"],"local","share","jsmol","j2s"))
- self.add_static_path('/j2s/core', os.path.join(os.environ["SAGE_ROOT"],"local","share","jsmol","j2s","core"))
+ self.add_static_path('/java/jmol', os.path.join(os.environ["SAGE_ROOT"],"share","jmol"))
+ self.add_static_path('/jsmol', os.path.join(os.environ["SAGE_ROOT"],"share","jsmol"))
+ self.add_static_path('/jsmol/js', os.path.join(os.environ["SAGE_ROOT"],"share","jsmol","js"))
+ self.add_static_path('/j2s', os.path.join(os.environ["SAGE_ROOT"],"jsmol","j2s"))
+ self.add_static_path('/jsmol/j2s', os.path.join(os.environ["SAGE_ROOT"],"share","jsmol","j2s"))
+ self.add_static_path('/j2s/core', os.path.join(os.environ["SAGE_ROOT"],"share","jsmol","j2s","core"))
import mimetypes
mimetypes.add_type('text/plain','.jmol')
diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/html/notebook/base.html.orig build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/html/notebook/base.html
--- build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/html/notebook/base.html.orig 2014-02-11 18:13:34.468086409 -0200
+++ build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/html/notebook/base.html 2014-02-11 18:13:51.591087065 -0200
@@ -46,7 +46,7 @@ INPUT:
<!-- Jmol - embedded 3D graphics -->
<script type="text/javascript" src="/java/jmol/appletweb/Jmol.js"></script>
<!-- This must stay in head -->
-<script>jmolInitialize("/java/jmol");jmolSetCallback("menuFile","/java/jmol/appletweb/SageMenu.mnu");</script>
+<script>jmolInitialize("/java/jmol", "JmolApplet.jar,Jmol.jar,vecmath.jar");</script>
diff -up build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/misc/misc.py.orig build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/misc/misc.py
--- build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/misc/misc.py.orig 2014-12-06 17:45:36.066723826 -0200
+++ build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/misc/misc.py 2014-12-06 17:45:38.853723933 -0200
@@ -174,7 +174,8 @@ def pad_zeros(s, size=3):
{% if JEDITABLE_TINYMCE and not worksheet.docbrowser() and not worksheet.is_published() %}
<!-- TinyMCE and jEditable - in-place editing of text cells -->
diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/js/jmol_lib.js.orig build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/js/jmol_lib.js
--- build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/js/jmol_lib.js.orig 2014-02-11 18:13:34.422086407 -0200
+++ build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/data/sage/js/jmol_lib.js 2014-02-11 18:13:51.576087064 -0200
@@ -256,9 +256,6 @@ function makeCntrlPanels(url, n, functio
panelHTML +='<button title="Move to own window" onClick="javascript:void(jmol_popup(\''+n+'\'))">Move to own window</button> arbitrarily resizable.<hr/>';
//static image to save
panelHTML +='<button onClick="sleepJmol('+n+',jmolStatus)"> Get Static Image to Save (Sleep) </button> Right-click or Cmd-click on image to get download options.<hr/>';
- //save file to local disk
- panelHTML += '<button title="Download View" onClick="javascript:void(jmolFileDownload('+n+'))">Download this view</button> will require loading signed applet if not already done.';
- panelHTML +='<hr/>';
//spin on
panelHTML +='<input class="worksheet" type="checkbox" value="spin on" onchange="jmol_spin(this.checked,'+n+');" title="Enable/disable spin"/>Spin on';
//antialaisdisplay (smoothing of objects)
diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/flask_version/base.py.orig build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/flask_version/base.py
--- build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/flask_version/base.py.orig 2014-02-11 18:13:34.459086409 -0200
+++ build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/flask_version/base.py 2014-02-11 18:13:51.590087065 -0200
@@ -4,8 +4,6 @@ from functools import partial
from flask import Flask, Module, url_for, render_template, request, session, redirect, g, make_response, current_app
from decorators import login_required, guest_or_login_required, with_lock
from decorators import global_lock
-# Make flask use the old session foo from <=flask-0.9
-from flask_oldsessions import OldSecureCookieSessionInterface
SAGENB_ROOT = os.path.split(resource_filename(__name__, ''))[0]
from flask.ext.autoindex import AutoIndex
try:
@@ -25,7 +23,6 @@ class SageNBFlask(Flask):
def __init__(self, *args, **kwds):
self.startup_token = kwds.pop('startup_token', None)
Flask.__init__(self, *args, **kwds)
- self.session_interface = OldSecureCookieSessionInterface()
-DATA = os.path.join(SAGENB_ROOT, 'data')
+from sage.misc.misc import SAGE_SRC
+DATA = os.path.join(SAGE_SRC, 'sagenb', 'data')
self.config['SESSION_COOKIE_HTTPONLY'] = False
@@ -36,7 +33,7 @@ class SageNBFlask(Flask):
self.add_static_path('/javascript', DATA)
self.add_static_path('/static', DATA)
self.add_static_path('/java', DATA)
- self.add_static_path('/java/jmol', os.path.join(os.environ["SAGE_ROOT"],"local","share","jmol"))
+ self.add_static_path('/java/jmol', os.path.join(DATA, "jmol"))
import mimetypes
mimetypes.add_type('text/plain','.jmol')
diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/cell.py.orig build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/cell.py
--- build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/cell.py.orig 2014-02-11 18:13:34.441086408 -0200
+++ build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/cell.py 2014-02-11 18:13:51.583087065 -0200
@@ -2369,7 +2369,7 @@ class Cell(Cell_generic):
jmol_script = jmol_file.read()
jmol_file.close()
- jmol_script = jmol_script.replace('defaultdirectory "', 'defaultdirectory "' + self.url_to_self() + '/')
+ jmol_script = jmol_script.replace('defaultdirectory "', 'defaultdirectory "/home/' + self.worksheet_filename() + '/')
jmol_file = open(jmol_name, 'w')
jmol_file.write(jmol_script)
diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/run_notebook.py.orig build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/run_notebook.py
--- build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/run_notebook.py.orig 2014-02-11 18:13:34.447086408 -0200
+++ build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/run_notebook.py 2014-02-11 18:13:51.586087065 -0200
if os.environ.has_key('DOT_SAGENB'):
DOT_SAGENB = os.environ['DOT_SAGENB']
diff -up build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/cell.py.orig build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/cell.py
--- build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/cell.py.orig 2014-12-06 17:45:36.067723826 -0200
+++ build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/cell.py 2014-12-06 17:45:38.854723933 -0200
@@ -2338,8 +2338,8 @@ class Cell(Cell_generic):
with open(jmol_name, 'r') as f:
jmol_script = f.read()
jmol_script = jmol_script.replace(
- 'defaultdirectory "',
- 'defaultdirectory "{0}/'.format(self.url_to_worksheet()))
+ 'defaultdirectory "',
+ 'defaultdirectory "/home/' + self.worksheet_filename() + '/')
with open(jmol_name, 'w') as f:
f.write(jmol_script)
diff -up build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/run_notebook.py.orig build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/run_notebook.py
--- build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/run_notebook.py.orig 2014-12-06 17:45:36.069723826 -0200
+++ build/pkgs/sagenb/src/sagenb-0.11.1/sagenb/notebook/run_notebook.py 2014-12-06 17:45:38.854723933 -0200
@@ -46,12 +46,14 @@ sagenb.notebook.misc.DIR = %(cwd)r #We s
# Flask #
#########
@ -113,15 +84,3 @@ diff -up build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/notebook/run_notebook.py.o
def save_notebook(notebook):
print "Quitting all running worksheets..."
--- build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/misc/misc.py.orig 2014-02-19 12:22:25.360997774 -0300
+++ build/pkgs/sagenb/src/sagenb-0.10.8.2/sagenb/misc/misc.py 2014-02-19 12:26:01.260011849 -0300
@@ -174,7 +174,8 @@ def pad_zeros(s, size=3):
SAGENB_ROOT = os.path.split(resource_filename(__name__, ''))[0]
-DATA = os.path.join(SAGENB_ROOT, 'data')
+from sage.misc.misc import SAGE_SRC
+DATA = os.path.join(SAGE_SRC, 'sagenb', 'data')
if os.environ.has_key('DOT_SAGENB'):
DOT_SAGENB = os.environ['DOT_SAGENB']