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Update to sagemath 6.4.1
This commit is contained in:
pcpa
parent
3e866bf86e
commit
738094a8d8
27 changed files with 276 additions and 12243 deletions
130
sagemath.spec
130
sagemath.spec
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@ -24,7 +24,7 @@
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%global pexpect_pkg pexpect-2.0
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%global polytopes_db_pkg polytopes_db-20120220
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%global rubiks_pkg rubiks-20070912
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%global sagenb_pkg sagenb-0.10.8.2
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%global sagenb_pkg sagenb-0.11.1
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%global sagetex_pkg sagetex-2.3.4
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%global SAGE_ROOT %{_libdir}/sagemath
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@ -38,8 +38,8 @@
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Name: sagemath
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Group: Applications/Engineering
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Summary: A free open-source mathematics software system
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Version: 6.3
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Release: 4%{?dist}
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Version: 6.4.1
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Release: 1%{?dist}
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# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
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# Additionally, every $files section has a comment with the license name
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# before files with that license
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@ -48,9 +48,6 @@ URL: http://www.sagemath.org
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Source0: http://boxen.math.washington.edu/home/%{name}/sage-mirror/src/sage-%{version}.tar.gz
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Source1: gprc.expect
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Source2: makecmds.sty
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# not installed by jmol package, use one in sagemath jmol spkg
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Source3: Jmol.js
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Source4: JmolHelp.html
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# 1. scons ignores most environment variables
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# 2. scons 2.2* does not have soname support (expected for scons 2.3*)
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@ -67,13 +64,10 @@ Patch1: %{name}-gmp.patch
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# Set of patches to work with system wide packages
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Patch2: %{name}-scripts.patch
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# Adapt to ntl 6.0.0.
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Patch3: %{name}-ntl6.patch
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# remove call to not implemented sagemath "is_package_installed" interfaces
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# need to package coin-or solver in fedora
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# remove check for non free solvers
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Patch4: %{name}-extensions.patch
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Patch3: %{name}-extensions.patch
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# helper to:
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# o respect a DESTDIR environment variable
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@ -81,81 +75,69 @@ Patch4: %{name}-extensions.patch
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# o minor change to help in incremental builds by avoiding rebuilding
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# files
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# o do not assume there is an installed sagemath
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Patch5: %{name}-rpmbuild.patch
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Patch4: %{name}-rpmbuild.patch
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# build documentation in buildroot environment
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Patch6: %{name}-sagedoc.patch
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Patch5: %{name}-sagedoc.patch
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# sage notebook rpm and system environment adjustments
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Patch7: %{name}-sagenb.patch
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Patch6: %{name}-sagenb.patch
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# do not attempt to create state files in system directories
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Patch8: %{name}-readonly.patch
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# force coercion of ecl t_string to ecl t_base_string
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# this is hackish and only required if ecl is built with unicode support
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Patch9: %{name}-ecl-unicode.patch
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Patch7: %{name}-readonly.patch
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# do not link explicitly to png12
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Patch10: %{name}-png.patch
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Patch8: %{name}-png.patch
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# work with all maxima-runtime lisp backend packages
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Patch11: %{name}-maxima.patch
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Patch9: %{name}-maxima.patch
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# execute 4ti2 programs in $PATH not in $SAGE_ROOT/local/bin
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Patch12: %{name}-4ti2.patch
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Patch10: %{name}-4ti2.patch
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# http://trac.sagemath.org/sage_trac/ticket/12992
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# http://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=1317
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Patch13: %{name}-pari.patch
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Patch11: %{name}-pari.patch
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# use jmol itself to export preview images
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# FIXME besides not using X and told so, fails if DISPLAY is not set
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Patch14: %{name}-jmol.patch
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Patch12: %{name}-jmol.patch
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# only cremona mini database built and installed
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# FIXME add a package with the full cremona database
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# FIXME actually it should be already available in pari-elldata
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Patch15: %{name}-cremona.patch
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Patch13: %{name}-cremona.patch
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# lrslib is a requires
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Patch16: %{name}-lrslib.patch
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Patch14: %{name}-lrslib.patch
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# nauty cannot be packaged due to license restrictions
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# http://cs.anu.edu.au/~bdm/nauty/
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# http://pallini.di.uniroma1.it/
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Patch17: %{name}-nauty.patch
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Patch15: %{name}-nauty.patch
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# gap hap package not (yet) available
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# http://www-gap.mcs.st-and.ac.uk/Packages/hap.html
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Patch18: %{name}-gap-hap.patch
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Patch16: %{name}-gap-hap.patch
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# enable lrcalc
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Patch19: %{name}-lrcalc.patch
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Patch17: %{name}-lrcalc.patch
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# enable cbc
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Patch20: %{name}-cbc.patch
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Patch18: %{name}-cbc.patch
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# Use system gap directories
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Patch21: %{name}-libgap.patch
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Patch19: %{name}-libgap.patch
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# enable fes
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Patch22: %{name}-fes.patch
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Patch20: %{name}-fes.patch
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# enable cryptominisat
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Patch23: %{name}-cryptominisat.patch
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Patch21: %{name}-cryptominisat.patch
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# Side effect of using distro packages
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# https://bugzilla.redhat.com/show_bug.cgi?id=974769
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Patch24: %{name}-sympy.patch
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# Correct some warnings of newer sphinx that are treatead as errors
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# by default as of sagemath 6.2; other problems were fixed using
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# -k (keep-going)
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Patch25: %{name}-sphinx.patch
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# Rediffed latest version from http://trac.sagemath.org/ticket/15767
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Patch26: %{name}-pari2.7.patch
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Patch22: %{name}-sympy.patch
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BuildRequires: 4ti2
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BuildRequires: atlas-devel
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@ -163,7 +145,7 @@ BuildRequires: cddlib-tools
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BuildRequires: cliquer-devel
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BuildRequires: coin-or-Cbc-devel
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BuildRequires: cryptominisat-devel
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BuildRequires: Cython
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BuildRequires: Cython >= 0.21.1
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BuildRequires: desktop-file-utils
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BuildRequires: dos2unix
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BuildRequires: dvipng
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@ -611,18 +593,13 @@ popd
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%patch17
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%patch18
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%patch19
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%patch20
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%patch21
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%if %{have_fes}
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%patch22
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%patch20
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%endif
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%patch23
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%patch24
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%patch25
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%patch26
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%patch21
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%patch22
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sed -e 's|@@SAGE_ROOT@@|%{SAGE_ROOT}|' \
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-e 's|@@SAGE_DOC@@|%{SAGE_DOC}|' \
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@ -687,7 +664,9 @@ pushd src/c_lib
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-e 's|@@optflags@@|%{optflags}|g' \
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-e "s|@@__global_ldflags@@|$ldflags|g" \
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-i SConstruct
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CXX=g++ UNAME=Linux SAGE64=auto scons
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# force building ntl_wrap.cpp with gcc otherwise other
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# modules will not find mangled symbols.
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CXX=gcc UNAME=Linux SAGE64=auto scons
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ln -s libcsage.so.0 libcsage.so
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popd
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pushd src/sage/libs/mpmath
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@ -757,19 +736,22 @@ popd
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pushd build/pkgs/sagenb/src/%{sagenb_pkg}
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rm -f %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
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python setup.py install --root=%{buildroot} --install-purelib=%{python_sitearch}
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# jmol
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rm -fr %{buildroot}%{python_sitearch}/sagenb/data/jmol
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mkdir -p %{buildroot}%{python_sitearch}/sagenb/data/jmol/appletweb
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pushd %{buildroot}%{python_sitearch}/sagenb/data/jmol
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cp -fa %{SOURCE3} %{SOURCE4} appletweb
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popd
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### FIXME waiting on https://bugzilla.redhat.com/show_bug.cgi?id=1108060
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# To get it to work you need to get the sagemath jmol spkg or an
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# upstream sagemath install, example:
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# cp -fr ~/sage-6.4.1-x86_64-Linux/local/share/jmol /usr/share/sagemath
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# cp -fr ~/sage-6.4.1-x86_64-Linux/local/share/jsmol /usr/share/sagemath
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mkdir -p $SAGE_SHARE/jmol
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mkdir -p $SAGE_SHARE/jsmol/
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# sage3d
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rm -f %{buildroot}%{_bindir}/sage3d
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%if %{with_sage3d}
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ln -sf %{SAGE_LOCAL}/bin/sage3d %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
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%endif
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# flask stuff not installed
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cp -ar flask_version %{buildroot}%{python_sitearch}/sagenb
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ln -sf %{python_sitearch}/sagenb %{buildroot}%{SAGE_SRC}/sagenb
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popd
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@ -1081,9 +1063,6 @@ rm %{buildroot}%{python_sitearch}/sagenb/translations/*/LC_MESSAGES/*.po
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rm -r %{buildroot}%{python_sitearch}/sagenb/data/sage3d
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%endif
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# remove cache files
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rm -r %{buildroot}%{python_sitearch}/sagenb/data/.webassets-cache
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# remove sage_setup
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rm -r %{buildroot}%{python_sitearch}/sage_setup
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@ -1099,23 +1078,6 @@ exit 0
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/sbin/ldconfig
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exit 0
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# Use symlinks and a minor patch to the notebook to not bundle jmol
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%post notebook
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ln -sf %{_javadir}/JmolApplet.jar %{python_sitearch}/sagenb/data/jmol/
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ln -sf %{_javadir}/Jmol.jar %{python_sitearch}/sagenb/data/jmol/
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ln -sf %{_javadir}/vecmath.jar %{python_sitearch}/sagenb/data/jmol/
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exit 0
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%postun notebook
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if [ $1 -eq 0 ] ; then
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rm -f %{python_sitearch}/sagenb/data/jmol/JmolApplet.jar
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rm -f %{python_sitearch}/sagenb/data/jmol/vecmath.jar
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rmdir %{python_sitearch}/sagenb/data/jmol &&
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rmdir %{python_sitearch}/sagenb/data &&
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rmdir %{python_sitearch}/sagenb
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fi
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exit 0
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%post sagetex
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%{_bindir}/mktexlsr
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exit 0
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@ -1188,7 +1150,6 @@ exit 0
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%{SAGE_ETC}/maxima
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%{SAGE_ETC}/mwrank
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%{SAGE_ETC}/pari
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%{SAGE_ETC}/singular
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#------------------------------------------------------------------------
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%files data-graphs
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@ -1270,7 +1231,8 @@ exit 0
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# ASL 2.0
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%{python_sitearch}/sagenb/data/highlight
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# LGPLv2+
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%{python_sitearch}/sagenb/data/jmol
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%{SAGE_SHARE}/jmol/
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%{SAGE_SHARE}/jsmol/
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# (MIT or GPLv2) and (MIT and BSD and GPL)
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%{python_sitearch}/sagenb/data/jquery
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# (MIT or GPLv2) and (MIT and BSD and GPL)
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@ -1291,8 +1253,6 @@ exit 0
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%endif
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# LGPLv2+
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%{python_sitearch}/sagenb/data/tiny_mce
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# Auto generated files
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%{python_sitearch}/sagenb/data/webassets_generated
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# LGPLv2+
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%{python_sitearch}/sagenb/data/zorn
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# GPLv2+
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@ -1317,6 +1277,9 @@ exit 0
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%dir %{python_sitearch}/sagenb/translations
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%lang(cs_CZ) %{python_sitearch}/sagenb/translations/cs_CZ
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%lang(de_AT) %{python_sitearch}/sagenb/translations/de_AT
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%lang(de_AT) %{python_sitearch}/sagenb/translations/en_US
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%lang(de_AT) %{python_sitearch}/sagenb/translations/es_ES
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%lang(de_AT) %{python_sitearch}/sagenb/translations/fr_FR
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%lang(pt_BR) %{python_sitearch}/sagenb/translations/pt_BR
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%lang(ru_RU) %{python_sitearch}/sagenb/translations/ru_RU
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@ -1341,6 +1304,9 @@ exit 0
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########################################################################
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%changelog
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* Wed Nov 26 2014 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 6.4.1-1
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- Update to sagemath 6.4.1 (#1095282)
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* Sat Nov 1 2014 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 6.3-4
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- Install 128x128 icon (#1157575)
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