diff --git a/.gitignore b/.gitignore
index b2b24fe..942fcf9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,3 +2,4 @@
 /sage-5.9.tar
 /sage-5.10.tar
 /sage-5.12.tar
+/sage-5.13.tar
diff --git a/sagemath-4ti2.patch b/sagemath-4ti2.patch
index 12e98dd..f1ff4cc 100644
--- a/sagemath-4ti2.patch
+++ b/sagemath-4ti2.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/sandpiles/sandpile.py.orig sage-5.12/spkg/build/sage-5.12/sage/sandpiles/sandpile.py
---- sage-5.12/spkg/build/sage-5.12/sage/sandpiles/sandpile.py.orig	2013-05-06 13:50:14.882749079 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/sandpiles/sandpile.py	2013-05-06 13:50:34.526749831 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/sandpiles/sandpile.py.orig sage-5.13/spkg/build/sage-5.13/sage/sandpiles/sandpile.py
+--- sage-5.13/spkg/build/sage-5.13/sage/sandpiles/sandpile.py.orig	2014-01-28 16:01:55.841188856 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/sandpiles/sandpile.py	2014-01-28 16:02:07.914189318 -0200
 @@ -24,8 +24,6 @@ packages.  An alternative is to install
  following variable to the correct path.
  """
@@ -10,7 +10,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/sandpiles/sandpile.py.orig sage-5.1
  r"""
  Sage Sandpiles
  
-@@ -4098,7 +4096,7 @@ class SandpileDivisor(dict):
+@@ -4097,7 +4095,7 @@ class SandpileDivisor(dict):
          sign_file.close()
          # compute
          try:
diff --git a/sagemath-cbc.patch b/sagemath-cbc.patch
index 90f227f..81b33a4 100644
--- a/sagemath-cbc.patch
+++ b/sagemath-cbc.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build/sage-5.12/module_list.py
---- sage-5.12/spkg/build/sage-5.12/module_list.py.orig	2013-10-16 12:11:43.002202675 -0300
-+++ sage-5.12/spkg/build/sage-5.12/module_list.py	2013-10-16 12:11:47.063202831 -0300
-@@ -2074,7 +2074,7 @@ if (os.path.isfile(SAGE_INC + "/cplex.h"
+diff -up sage-5.13/spkg/build/sage-5.13/module_list.py.orig sage-5.13/spkg/build/sage-5.13/module_list.py
+--- sage-5.13/spkg/build/sage-5.13/module_list.py.orig	2014-01-28 16:12:52.010213983 -0200
++++ sage-5.13/spkg/build/sage-5.13/module_list.py	2014-01-28 16:13:00.749214317 -0200
+@@ -2097,7 +2097,7 @@ if (os.path.isfile(SAGE_INC + "/cplex.h"
                    libraries = ["csage", "stdc++", "cplex"]) 
          )
  
diff --git a/sagemath-cremona.patch b/sagemath-cremona.patch
index 14bcd1b..3eaafe1 100644
--- a/sagemath-cremona.patch
+++ b/sagemath-cremona.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/databases/cremona.py.orig sage-5.12/spkg/build/sage-5.12/sage/databases/cremona.py
---- sage-5.12/spkg/build/sage-5.12/sage/databases/cremona.py.orig	2013-02-22 17:33:50.579875129 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/databases/cremona.py	2013-02-22 17:34:05.051875683 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/databases/cremona.py.orig sage-5.13/spkg/build/sage-5.13/sage/databases/cremona.py
+--- sage-5.13/spkg/build/sage-5.13/sage/databases/cremona.py.orig	2013-02-22 17:33:50.579875129 -0300
++++ sage-5.13/spkg/build/sage-5.13/sage/databases/cremona.py	2013-02-22 17:34:05.051875683 -0300
 @@ -889,14 +889,9 @@ class MiniCremonaDatabase(SQLDatabase):
              if N < self.largest_conductor():
                  message = "There is no elliptic curve with label " + label \
diff --git a/sagemath-cryptominisat.patch b/sagemath-cryptominisat.patch
index 59d148b..a0c0b1e 100644
--- a/sagemath-cryptominisat.patch
+++ b/sagemath-cryptominisat.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build/sage-5.12/module_list.py
---- sage-5.12/spkg/build/sage-5.12/module_list.py.orig	2013-10-16 12:39:05.925265588 -0300
-+++ sage-5.12/spkg/build/sage-5.12/module_list.py	2013-10-16 12:39:14.072265900 -0300
-@@ -2084,7 +2084,7 @@ if is_package_installed('cbc'):
+diff -up sage-5.13/spkg/build/sage-5.13/module_list.py.orig sage-5.13/spkg/build/sage-5.13/module_list.py
+--- sage-5.13/spkg/build/sage-5.13/module_list.py.orig	2014-01-28 16:20:58.178232600 -0200
++++ sage-5.13/spkg/build/sage-5.13/module_list.py	2014-01-28 16:21:11.779233120 -0200
+@@ -2107,7 +2107,7 @@ if is_package_installed('cbc'):
          )
  
  
diff --git a/sagemath-ecl-unicode.patch b/sagemath-ecl-unicode.patch
index 7763815..0d4fe40 100644
--- a/sagemath-ecl-unicode.patch
+++ b/sagemath-ecl-unicode.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pxd.orig sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pxd
---- sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pxd.orig	2013-03-19 16:11:17.358705144 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pxd	2013-03-19 16:11:27.719705541 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pxd.orig sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pxd
+--- sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pxd.orig	2014-01-28 16:00:06.455184667 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pxd	2014-01-28 16:00:17.705185098 -0200
 @@ -133,6 +133,7 @@ cdef extern from "ecl/ecl.h":
      cl_object ecl_read_from_cstring_safe(char *s, cl_object err)
      cl_object cl_write_to_string(cl_narg narg, cl_object o) 
@@ -9,10 +9,10 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pxd.orig sage-5.12/spkg/bu
      
      # S-expr evaluation and function calls
      
-diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx.orig sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx
---- sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx.orig	2013-03-19 16:11:07.489704766 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx	2013-03-19 16:11:27.719705541 -0300
-@@ -238,17 +238,19 @@ cdef cl_object ecl_safe_eval(cl_object f
+diff -up sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pyx.orig sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pyx
+--- sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pyx.orig	2014-01-28 15:59:57.900184339 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/libs/ecl.pyx	2014-01-28 16:00:17.707185098 -0200
+@@ -236,17 +236,19 @@ cdef cl_object ecl_safe_eval(cl_object f
          ...
          RuntimeError: ECL says: Console interrupt.
      """
@@ -34,7 +34,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx.orig sage-5.12/spkg/bu
      l = cl_cons(func,cl_cons(arg,Cnil));
  
      ecl_sig_on()
-@@ -256,17 +258,20 @@ cdef cl_object ecl_safe_funcall(cl_objec
+@@ -254,17 +256,20 @@ cdef cl_object ecl_safe_funcall(cl_objec
      ecl_sig_off()
  
      if ecl_nvalues > 1:
@@ -57,7 +57,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx.orig sage-5.12/spkg/bu
      else:
          return ecl_values(0)
  
-@@ -316,10 +321,11 @@ def print_objects():
+@@ -314,10 +319,11 @@ def print_objects():
          HELLO
      """
      
@@ -71,7 +71,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx.orig sage-5.12/spkg/bu
          c=cl_cadr(c)
          if c == Cnil:
              break
-@@ -394,6 +400,7 @@ cdef cl_object python_to_ecl(pyobj) exce
+@@ -392,6 +398,7 @@ cdef cl_object python_to_ecl(pyobj) exce
          raise TypeError,"Unimplemented type for python_to_ecl"
  
  cdef ecl_to_python(cl_object o):
@@ -79,7 +79,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx.orig sage-5.12/spkg/bu
      cdef Integer N
      # conversions from an ecl object to a python object.
  
-@@ -428,7 +435,8 @@ cdef ecl_to_python(cl_object o):
+@@ -426,7 +433,8 @@ cdef ecl_to_python(cl_object o):
                  return tuple(L)
          return L
      else:
@@ -89,7 +89,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ecl.pyx.orig sage-5.12/spkg/bu
  
  #Maxima's BFLOAT multiprecision float type can be read with:
  #def bfloat_to_python(e):
-@@ -644,7 +652,7 @@ cdef class EclObject:
+@@ -642,7 +650,7 @@ cdef class EclObject:
  
          """
          cdef cl_object s
diff --git a/sagemath-extensions.patch b/sagemath-extensions.patch
index bf701fd..6861d22 100644
--- a/sagemath-extensions.patch
+++ b/sagemath-extensions.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build/sage-5.12/module_list.py
---- sage-5.12/spkg/build/sage-5.12/module_list.py.orig	2013-10-16 11:54:03.841162116 -0300
-+++ sage-5.12/spkg/build/sage-5.12/module_list.py	2013-10-16 11:54:14.330162518 -0300
-@@ -2029,7 +2029,8 @@ ext_modules = [
+diff -up sage-5.13/spkg/build/sage-5.13/module_list.py.orig sage-5.13/spkg/build/sage-5.13/module_list.py
+--- sage-5.13/spkg/build/sage-5.13/module_list.py.orig	2014-01-28 15:56:04.699175409 -0200
++++ sage-5.13/spkg/build/sage-5.13/module_list.py	2014-01-28 15:56:14.210175773 -0200
+@@ -2052,7 +2052,8 @@ ext_modules = [
  # These extensions are to be compiled only if the
  # corresponding packages have been installed
  
diff --git a/sagemath-fes.patch b/sagemath-fes.patch
index ca982d8..a287cf5 100644
--- a/sagemath-fes.patch
+++ b/sagemath-fes.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build/sage-5.12/module_list.py
---- sage-5.12/spkg/build/sage-5.12/module_list.py.orig	2013-10-16 12:13:30.643206797 -0300
-+++ sage-5.12/spkg/build/sage-5.12/module_list.py	2013-10-16 12:13:41.295207205 -0300
-@@ -2033,7 +2033,7 @@ ext_modules = [
+diff -up sage-5.13/spkg/build/sage-5.13/module_list.py.orig sage-5.13/spkg/build/sage-5.13/module_list.py
+--- sage-5.13/spkg/build/sage-5.13/module_list.py.orig	2014-01-28 16:14:01.061216627 -0200
++++ sage-5.13/spkg/build/sage-5.13/module_list.py	2014-01-28 16:14:03.961216738 -0200
+@@ -2056,7 +2056,7 @@ ext_modules = [
  def is_package_installed(name):
      return False
  
diff --git a/sagemath-gap-hap.patch b/sagemath-gap-hap.patch
index f45014f..6b74e24 100644
--- a/sagemath-gap-hap.patch
+++ b/sagemath-gap-hap.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/groups/perm_gps/permgroup.py.orig sage-5.12/spkg/build/sage-5.12/sage/groups/perm_gps/permgroup.py
---- sage-5.12/spkg/build/sage-5.12/sage/groups/perm_gps/permgroup.py.orig	2013-10-16 12:10:08.670199063 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/groups/perm_gps/permgroup.py	2013-10-16 12:10:21.342199548 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/groups/perm_gps/permgroup.py.orig sage-5.13/spkg/build/sage-5.13/sage/groups/perm_gps/permgroup.py
+--- sage-5.13/spkg/build/sage-5.13/sage/groups/perm_gps/permgroup.py.orig	2013-10-16 12:10:08.670199063 -0300
++++ sage-5.13/spkg/build/sage-5.13/sage/groups/perm_gps/permgroup.py	2013-10-16 12:10:21.342199548 -0300
 @@ -180,8 +180,7 @@ def hap_decorator(f):
      """
      @wraps(f)
diff --git a/sagemath-gmp.patch b/sagemath-gmp.patch
index 8883cc0..b056440 100644
--- a/sagemath-gmp.patch
+++ b/sagemath-gmp.patch
@@ -1,11 +1,12 @@
---- sage-5.12/spkg/build/sage-5.12/c_lib/src/memory.c.orig	2012-07-10 11:46:54.516595967 -0400
-+++ sage-5.12/spkg/build/sage-5.12/c_lib/src/memory.c	2012-07-10 11:47:12.688596755 -0400
-@@ -17,7 +17,7 @@ AUTHORS:
-  *                  http://www.gnu.org/licenses/
+diff -up sage-5.13/spkg/build/sage-5.13/c_lib/src/memory.c.orig sage-5.13/spkg/build/sage-5.13/c_lib/src/memory.c
+--- sage-5.13/spkg/build/sage-5.13/c_lib/src/memory.c.orig	2014-01-28 15:45:05.920150182 -0200
++++ sage-5.13/spkg/build/sage-5.13/c_lib/src/memory.c	2014-01-28 15:45:14.225150500 -0200
+@@ -18,7 +18,7 @@ AUTHORS:
   ****************************************************************************/
  
+ #include <Python.h>
 -#include <mpir.h>
 +#include <gmp.h>
+ #include "interrupt.h"
  #include "memory.h"
  
- /* mpir memory functions */
diff --git a/sagemath-jmol.patch b/sagemath-jmol.patch
index 5e9c783..8398f40 100644
--- a/sagemath-jmol.patch
+++ b/sagemath-jmol.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/interfaces/jmoldata.py.orig sage-5.12/spkg/build/sage-5.12/sage/interfaces/jmoldata.py
---- sage-5.12/spkg/build/sage-5.12/sage/interfaces/jmoldata.py.orig	2012-11-10 12:03:07.742817945 -0200
-+++ sage-5.12/spkg/build/sage-5.12/sage/interfaces/jmoldata.py	2012-11-10 12:03:34.499818970 -0200
+diff -up sage-5.13/spkg/build/sage-5.13/sage/interfaces/jmoldata.py.orig sage-5.13/spkg/build/sage-5.13/sage/interfaces/jmoldata.py
+--- sage-5.13/spkg/build/sage-5.13/sage/interfaces/jmoldata.py.orig	2012-11-10 12:03:07.742817945 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/interfaces/jmoldata.py	2012-11-10 12:03:34.499818970 -0200
 @@ -86,7 +86,7 @@ class JmolData(SageObject):
              sage_makedirs(jmolscratch)
          scratchout = os.path.join(jmolscratch,"jmolout.txt")
diff --git a/sagemath-libgap.patch b/sagemath-libgap.patch
index 3f5d8de..74da09b 100644
--- a/sagemath-libgap.patch
+++ b/sagemath-libgap.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/gap/util.pyx.orig sage-5.12/spkg/build/sage-5.12/sage/libs/gap/util.pyx
---- sage-5.12/spkg/build/sage-5.12/sage/libs/gap/util.pyx.orig	2013-05-06 14:24:03.160826749 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/libs/gap/util.pyx	2013-05-06 14:25:25.806829913 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/libs/gap/util.pyx.orig sage-5.13/spkg/build/sage-5.13/sage/libs/gap/util.pyx
+--- sage-5.13/spkg/build/sage-5.13/sage/libs/gap/util.pyx.orig	2013-05-06 14:24:03.160826749 -0300
++++ sage-5.13/spkg/build/sage-5.13/sage/libs/gap/util.pyx	2013-05-06 14:25:25.806829913 -0300
 @@ -155,18 +155,9 @@ def gap_root():
         
          sage: from sage.libs.gap.util import gap_root
diff --git a/sagemath-lrcalc.patch b/sagemath-lrcalc.patch
index 1b325e7..4b7e23e 100644
--- a/sagemath-lrcalc.patch
+++ b/sagemath-lrcalc.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build/sage-5.12/module_list.py
---- sage-5.12/spkg/build/sage-5.12/module_list.py.orig	2013-10-16 12:10:52.183200729 -0300
-+++ sage-5.12/spkg/build/sage-5.12/module_list.py	2013-10-16 12:11:01.725201094 -0300
-@@ -2109,7 +2109,7 @@ if UNAME[0] == "Darwin" and not UNAME[2]
+diff -up sage-5.13/spkg/build/sage-5.13/module_list.py.orig sage-5.13/spkg/build/sage-5.13/module_list.py
+--- sage-5.13/spkg/build/sage-5.13/module_list.py.orig	2014-01-28 16:12:03.635212130 -0200
++++ sage-5.13/spkg/build/sage-5.13/module_list.py	2014-01-28 16:12:12.674212476 -0200
+@@ -2132,7 +2132,7 @@ if UNAME[0] == "Darwin" and not UNAME[2]
          )
  
  
diff --git a/sagemath-lrslib.patch b/sagemath-lrslib.patch
index 037f6c3..d8ea145 100644
--- a/sagemath-lrslib.patch
+++ b/sagemath-lrslib.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/geometry/polyhedron/base.py.orig sage-5.12/spkg/build/sage-5.12/sage/geometry/polyhedron/base.py
---- sage-5.12/spkg/build/sage-5.12/sage/geometry/polyhedron/base.py.orig	2013-10-16 12:08:54.546196224 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/geometry/polyhedron/base.py	2013-10-16 12:09:04.060196589 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/geometry/polyhedron/base.py.orig sage-5.13/spkg/build/sage-5.13/sage/geometry/polyhedron/base.py
+--- sage-5.13/spkg/build/sage-5.13/sage/geometry/polyhedron/base.py.orig	2013-10-16 12:08:54.546196224 -0300
++++ sage-5.13/spkg/build/sage-5.13/sage/geometry/polyhedron/base.py	2013-10-16 12:09:04.060196589 -0300
 @@ -3291,11 +3291,6 @@ class Polyhedron_base(Element):
  
               David Avis's lrs program.
diff --git a/sagemath-maxima.patch b/sagemath-maxima.patch
index a1a164c..5b19cb3 100644
--- a/sagemath-maxima.patch
+++ b/sagemath-maxima.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/interfaces/maxima.py.orig sage-5.12/spkg/build/sage-5.12/sage/interfaces/maxima.py
---- sage-5.12/spkg/build/sage-5.12/sage/interfaces/maxima.py.orig	2013-07-29 19:54:04.395052544 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/interfaces/maxima.py	2013-07-29 19:55:18.259055373 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/interfaces/maxima.py.orig sage-5.13/spkg/build/sage-5.13/sage/interfaces/maxima.py
+--- sage-5.13/spkg/build/sage-5.13/sage/interfaces/maxima.py.orig	2013-07-29 19:54:04.395052544 -0300
++++ sage-5.13/spkg/build/sage-5.13/sage/interfaces/maxima.py	2013-07-29 19:55:18.259055373 -0300
 @@ -544,7 +544,7 @@ class Maxima(MaximaAbstract, Expect):
          Expect.__init__(self,
                          name = 'maxima',
@@ -20,9 +20,9 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/interfaces/maxima.py.orig sage-5.12
          self._eval_line('0;')
  
      def __reduce__(self):
-diff -up sage-5.12/spkg/build/sage_scripts-5.12/sage-maxima.lisp.orig sage-5.12/spkg/build/sage_scripts-5.12/sage-maxima.lisp
---- sage-5.12/spkg/build/sage_scripts-5.12/sage-maxima.lisp.orig	2013-07-29 19:54:04.402052544 -0300
-+++ sage-5.12/spkg/build/sage_scripts-5.12/sage-maxima.lisp	2013-07-29 19:55:33.867055970 -0300
+diff -up sage-5.13/spkg/build/sage_scripts-5.13/sage-maxima.lisp.orig sage-5.13/spkg/build/sage_scripts-5.13/sage-maxima.lisp
+--- sage-5.13/spkg/build/sage_scripts-5.13/sage-maxima.lisp.orig	2013-07-29 19:54:04.402052544 -0300
++++ sage-5.13/spkg/build/sage_scripts-5.13/sage-maxima.lisp	2013-07-29 19:55:33.867055970 -0300
 @@ -3,4 +3,8 @@
  ;(setf *general-display-prefix* "<sage-display>")
  
diff --git a/sagemath-nauty.patch b/sagemath-nauty.patch
index 7076c24..6fe98a0 100644
--- a/sagemath-nauty.patch
+++ b/sagemath-nauty.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/graphs/graph_generators.py.orig sage-5.12/spkg/build/sage-5.12/sage/graphs/graph_generators.py
---- sage-5.12/spkg/build/sage-5.12/sage/graphs/graph_generators.py.orig	2013-10-16 12:18:25.218218077 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/graphs/graph_generators.py	2013-10-16 12:18:46.709218900 -0300
-@@ -793,7 +793,7 @@ class GraphGenerators():
+diff -up sage-5.13/spkg/build/sage-5.13/sage/graphs/graph_generators.py.orig sage-5.13/spkg/build/sage-5.13/sage/graphs/graph_generators.py
+--- sage-5.13/spkg/build/sage-5.13/sage/graphs/graph_generators.py.orig	2014-01-28 16:10:40.018208928 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/graphs/graph_generators.py	2014-01-28 16:10:49.569209294 -0200
+@@ -810,7 +810,7 @@ class GraphGenerators():
          """
          import subprocess
          from sage.misc.package import is_package_installed
diff --git a/sagemath-nopari2.6.patch b/sagemath-nopari2.6.patch
index 31c434f..8f44508 100644
--- a/sagemath-nopari2.6.patch
+++ b/sagemath-nopari2.6.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/pari/decl.pxi.orig sage-5.12/spkg/build/sage-5.12/sage/libs/pari/decl.pxi
---- sage-5.12/spkg/build/sage-5.12/sage/libs/pari/decl.pxi.orig	2013-10-16 12:36:08.386258790 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/libs/pari/decl.pxi	2013-10-16 12:36:42.853260110 -0300
-@@ -856,7 +856,6 @@ cdef extern from 'pari/pari.h':
+diff -up sage-5.13/spkg/build/sage-5.13/sage/libs/pari/decl.pxi.orig sage-5.13/spkg/build/sage-5.13/sage/libs/pari/decl.pxi
+--- sage-5.13/spkg/build/sage-5.13/sage/libs/pari/decl.pxi.orig	2014-01-28 16:15:59.591221166 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/libs/pari/decl.pxi	2014-01-28 16:16:06.331221424 -0200
+@@ -869,7 +869,6 @@ cdef extern from 'pari/pari.h':
      GEN     polredabs0(GEN x, long flag)
      GEN     polredabs2(GEN x)
      GEN     polredabsall(GEN x, long flun)
@@ -9,17 +9,17 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/pari/decl.pxi.orig sage-5.12/s
      GEN     qflll0(GEN x, long flag)
      GEN     qflllgram0(GEN x, long flag)
      GEN     smallpolred(GEN x)
-diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx.orig sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx
---- sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx.orig	2013-10-16 12:36:50.848260416 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx	2013-10-16 12:37:41.619262360 -0300
-@@ -8081,10 +8081,6 @@ cdef class gen(sage.structure.element.Ri
+diff -up sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx.orig sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx
+--- sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx.orig	2014-01-28 16:16:21.446222003 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx	2014-01-28 16:16:33.024222446 -0200
+@@ -8087,10 +8087,6 @@ cdef class gen(sage.structure.element.Ri
          pari_catch_sig_on()
-         return self.new_gen(polredabs0(self.g, flag))
+         return P.new_gen(polredabs0(self.g, flag))
  
 -    def polredbest(self, flag=0):
 -        pari_catch_sig_on()
--        return self.new_gen(polredbest(self.g, flag))
+-        return P.new_gen(polredbest(self.g, flag))
 -
      def polresultant(self, y, var=-1, flag=0):
-         t0GEN(y)
+         cdef gen t0 = objtogen(y)
          pari_catch_sig_on()
diff --git a/sagemath-ntl6.patch b/sagemath-ntl6.patch
index 59c0c89..5f24bf0 100644
--- a/sagemath-ntl6.patch
+++ b/sagemath-ntl6.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/c_lib/include/ntl_wrap.h.orig sage-5.12/spkg/build/sage-5.12/c_lib/include/ntl_wrap.h
---- sage-5.12/spkg/build/sage-5.12/c_lib/include/ntl_wrap.h.orig	2013-07-29 19:40:07.189020485 -0300
-+++ sage-5.12/spkg/build/sage-5.12/c_lib/include/ntl_wrap.h	2013-07-29 19:40:11.831020662 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/c_lib/include/ntl_wrap.h.orig sage-5.13/spkg/build/sage-5.13/c_lib/include/ntl_wrap.h
+--- sage-5.13/spkg/build/sage-5.13/c_lib/include/ntl_wrap.h.orig	2013-07-29 19:40:07.189020485 -0300
++++ sage-5.13/spkg/build/sage-5.13/c_lib/include/ntl_wrap.h	2013-07-29 19:40:11.831020662 -0300
 @@ -40,91 +40,92 @@ EXTERN void setup_NTL_error_callback(voi
  ////////  ZZ //////////
  
@@ -451,9 +451,9 @@ diff -up sage-5.12/spkg/build/sage-5.12/c_lib/include/ntl_wrap.h.orig sage-5.12/
  
 -EXTERN void mat_GF2_setitem(struct mat_GF2* x, int i, int j, const struct GF2* z);
 +EXTERN void mat_GF2_setitem(mat_GF2* x, int i, int j, const GF2* z);
-diff -up sage-5.12/spkg/build/sage-5.12/c_lib/src/ntl_wrap.cpp.orig sage-5.12/spkg/build/sage-5.12/c_lib/src/ntl_wrap.cpp
---- sage-5.12/spkg/build/sage-5.12/c_lib/src/ntl_wrap.cpp.orig	2013-07-29 19:40:07.197020485 -0300
-+++ sage-5.12/spkg/build/sage-5.12/c_lib/src/ntl_wrap.cpp	2013-07-29 19:40:11.834020662 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/c_lib/src/ntl_wrap.cpp.orig sage-5.13/spkg/build/sage-5.13/c_lib/src/ntl_wrap.cpp
+--- sage-5.13/spkg/build/sage-5.13/c_lib/src/ntl_wrap.cpp.orig	2013-07-29 19:40:07.197020485 -0300
++++ sage-5.13/spkg/build/sage-5.13/c_lib/src/ntl_wrap.cpp	2013-07-29 19:40:11.834020662 -0300
 @@ -29,7 +29,7 @@ int ZZ_to_int(const ZZ* x)
  
  /* Returns a *new* ZZ object.
@@ -1350,9 +1350,9 @@ diff -up sage-5.12/spkg/build/sage-5.12/c_lib/src/ntl_wrap.cpp.orig sage-5.12/sp
  {
      //int j;
      cpn.restore();
-diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/ntl/decl.pxi.orig sage-5.12/spkg/build/sage-5.12/sage/libs/ntl/decl.pxi
---- sage-5.12/spkg/build/sage-5.12/sage/libs/ntl/decl.pxi.orig	2013-07-29 19:39:08.246018227 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/libs/ntl/decl.pxi	2013-07-29 19:40:11.836020662 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/libs/ntl/decl.pxi.orig sage-5.13/spkg/build/sage-5.13/sage/libs/ntl/decl.pxi
+--- sage-5.13/spkg/build/sage-5.13/sage/libs/ntl/decl.pxi.orig	2013-07-29 19:39:08.246018227 -0300
++++ sage-5.13/spkg/build/sage-5.13/sage/libs/ntl/decl.pxi	2013-07-29 19:40:11.836020662 -0300
 @@ -22,7 +22,7 @@ from sage.libs.ntl.ntl_ZZ_pEX_decl cimpo
  
  cdef extern from "ntl_wrap.h":
diff --git a/sagemath-pari.patch b/sagemath-pari.patch
index cc13c2e..f95085a 100644
--- a/sagemath-pari.patch
+++ b/sagemath-pari.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/interfaces/gp.py.orig sage-5.12/spkg/build/sage-5.12/sage/interfaces/gp.py
---- sage-5.12/spkg/build/sage-5.12/sage/interfaces/gp.py.orig	2013-10-16 12:06:10.261189933 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/interfaces/gp.py	2013-10-16 12:06:21.487190363 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/interfaces/gp.py.orig sage-5.13/spkg/build/sage-5.13/sage/interfaces/gp.py
+--- sage-5.13/spkg/build/sage-5.13/sage/interfaces/gp.py.orig	2014-01-28 16:06:59.279200475 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/interfaces/gp.py	2014-01-28 16:07:36.218201890 -0200
 @@ -977,11 +977,11 @@ def is_GpElement(x):
      """
      return isinstance(x, GpElement)
@@ -16,10 +16,10 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/interfaces/gp.py.orig sage-5.12/spk
  
  # An instance
  gp = Gp(logfile=os.path.join(DOT_SAGE,'gp-expect.log')) # useful for debugging!
-diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx.orig sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx
---- sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx.orig	2013-10-16 12:06:00.720189568 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx	2013-10-16 12:06:21.498190364 -0300
-@@ -183,6 +183,10 @@ include 'sage/ext/python.pxi'
+diff -up sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx.orig sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx
+--- sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx.orig	2014-01-28 16:07:00.806200534 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/libs/pari/gen.pyx	2014-01-28 16:08:42.169204415 -0200
+@@ -194,6 +194,10 @@ cdef extern from "misc.h":
  cdef extern from "mpz_pylong.h":
      cdef int mpz_set_pylong(mpz_t dst, src) except -1
  
@@ -27,19 +27,19 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/libs/pari/gen.pyx.orig sage-5.12/sp
 +    cdef void mp_get_memory_functions(void**, void**, void**)
 +    cdef void mp_set_memory_functions(void*, void*, void*)
 +
- # Make sure we don't use mpz_t_offset before initializing it by
- # putting in a value that's likely to provoke a segmentation fault,
- # rather than silently corrupting memory.
-@@ -9292,7 +9296,12 @@ cdef class PariInstance(sage.structure.p
+ # Will be imported as needed
+ Integer = None
  
+@@ -9319,7 +9323,12 @@ cdef class PariInstance(sage.structure.p
          # The size here doesn't really matter, because we will allocate
-         # our own stack anyway. We ask PARI not to set up signal handlers.
+         # our own stack anyway. We ask PARI not to set up signal and
+         # error handlers.
 +        cdef void *_gmp_malloc
 +        cdef void *_gmp_realloc
 +        cdef void *_gmp_free
 +        mp_get_memory_functions(&_gmp_malloc, &_gmp_realloc, &_gmp_free)
-         pari_init_opts(10000, maxprime, INIT_JMPm | INIT_DFTm)
+         pari_init_opts(10000, maxprime, INIT_DFTm)
 +        mp_set_memory_functions(_gmp_malloc, _gmp_realloc, _gmp_free)
-         num_primes = maxprime
  
-         # NOTE: pari_catch_sig_on() can only come AFTER pari_init_opts()!
+         _pari_init_error_handling()
+ 
diff --git a/sagemath-png.patch b/sagemath-png.patch
index ef21340..bb9d913 100644
--- a/sagemath-png.patch
+++ b/sagemath-png.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build/sage-5.12/module_list.py
---- sage-5.12/spkg/build/sage-5.12/module_list.py.orig	2013-10-16 12:04:58.107187170 -0300
-+++ sage-5.12/spkg/build/sage-5.12/module_list.py	2013-10-16 12:05:13.747187769 -0300
-@@ -1028,7 +1028,7 @@ ext_modules = [
+diff -up sage-5.13/spkg/build/sage-5.13/module_list.py.orig sage-5.13/spkg/build/sage-5.13/module_list.py
+--- sage-5.13/spkg/build/sage-5.13/module_list.py.orig	2014-01-28 16:00:48.914186293 -0200
++++ sage-5.13/spkg/build/sage-5.13/module_list.py	2014-01-28 16:00:58.259186651 -0200
+@@ -1035,7 +1035,7 @@ ext_modules = [
  
      Extension('sage.matrix.matrix_mod2_dense',
                sources = ['sage/matrix/matrix_mod2_dense.pyx'],
@@ -10,7 +10,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build
                extra_compile_args = m4ri_extra_compile_args,
                depends = [SAGE_INC + "/png.h", SAGE_INC + "/m4ri/m4ri.h"]),
  
-@@ -1323,7 +1323,7 @@ ext_modules = [
+@@ -1333,7 +1333,7 @@ ext_modules = [
  
      Extension('sage.modules.vector_mod2_dense',
                sources = ['sage/modules/vector_mod2_dense.pyx'],
@@ -19,7 +19,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build
                extra_compile_args = m4ri_extra_compile_args,
                depends = [SAGE_INC + "/png.h", SAGE_INC + "/m4ri/m4ri.h"]),
      
-@@ -1801,7 +1801,7 @@ ext_modules = [
+@@ -1824,7 +1824,7 @@ ext_modules = [
      Extension('sage.rings.polynomial.pbori',
                sources = ['sage/rings/polynomial/pbori.pyx'],
                libraries=['polybori-' + polybori_major_version,
diff --git a/sagemath-readonly.patch b/sagemath-readonly.patch
index 1b310b0..dce6086 100644
--- a/sagemath-readonly.patch
+++ b/sagemath-readonly.patch
@@ -1,7 +1,7 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/all.py.orig sage-5.12/spkg/build/sage-5.12/sage/all.py
---- sage-5.12/spkg/build/sage-5.12/sage/all.py.orig	2013-10-16 12:04:06.447185192 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/all.py	2013-10-16 12:04:16.661185583 -0300
-@@ -311,11 +311,11 @@ def _write_started_file():
+diff -up sage-5.13/spkg/build/sage-5.13/sage/all.py.orig sage-5.13/spkg/build/sage-5.13/sage/all.py
+--- sage-5.13/spkg/build/sage-5.13/sage/all.py.orig	2014-01-28 15:59:04.029182276 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/all.py	2014-01-28 15:59:15.560182718 -0200
+@@ -304,11 +304,11 @@ def _write_started_file():
  
      Check that the file exists when Sage is running::
  
diff --git a/sagemath-rpmbuild.patch b/sagemath-rpmbuild.patch
index 3e57217..9987686 100644
--- a/sagemath-rpmbuild.patch
+++ b/sagemath-rpmbuild.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig sage-5.12/spkg/build/conway_polynomials-0.4.p0/spkg-install
---- sage-5.12/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig	2013-10-16 11:55:08.703164600 -0300
-+++ sage-5.12/spkg/build/conway_polynomials-0.4.p0/spkg-install	2013-10-16 11:55:11.351164701 -0300
+diff -up sage-5.13/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig sage-5.13/spkg/build/conway_polynomials-0.4.p0/spkg-install
+--- sage-5.13/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig	2014-01-28 15:57:09.773177901 -0200
++++ sage-5.13/spkg/build/conway_polynomials-0.4.p0/spkg-install	2014-01-28 15:57:15.720178129 -0200
 @@ -2,9 +2,10 @@
  
  import os
@@ -14,9 +14,9 @@ diff -up sage-5.12/spkg/build/conway_polynomials-0.4.p0/spkg-install.orig sage-5
  
  def create_db():
      db = {}
-diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build/sage-5.12/module_list.py
---- sage-5.12/spkg/build/sage-5.12/module_list.py.orig	2013-10-16 11:54:46.324163743 -0300
-+++ sage-5.12/spkg/build/sage-5.12/module_list.py	2013-10-16 11:55:11.353164701 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/module_list.py.orig sage-5.13/spkg/build/sage-5.13/module_list.py
+--- sage-5.13/spkg/build/sage-5.13/module_list.py.orig	2014-01-28 15:56:51.221177191 -0200
++++ sage-5.13/spkg/build/sage-5.13/module_list.py	2014-01-28 15:57:15.722178129 -0200
 @@ -5,7 +5,7 @@ from distutils.core import setup
  from distutils.extension import Extension
  from sage.env import *
@@ -49,7 +49,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build
  polybori_major_version = '0.8'
  
  
-@@ -672,7 +673,7 @@ ext_modules = [
+@@ -675,7 +676,7 @@ ext_modules = [
                sources = ['sage/libs/lcalc/lcalc_Lfunction.pyx'],
                libraries = ['m', 'ntl', 'mpfr', 'gmp', 'gmpxx',
                             'Lfunction', 'stdc++'],
@@ -58,9 +58,9 @@ diff -up sage-5.12/spkg/build/sage-5.12/module_list.py.orig sage-5.12/spkg/build
                extra_compile_args=["-O3", "-ffast-math"],
                language = 'c++'),
       
-diff -up sage-5.12/spkg/build/sage-5.12/setup.py.orig sage-5.12/spkg/build/sage-5.12/setup.py
---- sage-5.12/spkg/build/sage-5.12/setup.py.orig	2013-10-18 11:46:06.182555124 -0300
-+++ sage-5.12/spkg/build/sage-5.12/setup.py	2013-10-18 11:46:29.092556002 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/setup.py.orig sage-5.13/spkg/build/sage-5.13/setup.py
+--- sage-5.13/spkg/build/sage-5.13/setup.py.orig	2014-01-28 15:57:09.788177902 -0200
++++ sage-5.13/spkg/build/sage-5.13/setup.py	2014-01-28 15:57:15.723178129 -0200
 @@ -36,23 +36,13 @@ except KeyError:
      compile_result_dir = None
      keep_going = False
diff --git a/sagemath-sagedoc.patch b/sagemath-sagedoc.patch
index 0adf030..958a309 100644
--- a/sagemath-sagedoc.patch
+++ b/sagemath-sagedoc.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/doc/common/builder.py.orig sage-5.12/spkg/build/sage-5.12/doc/common/builder.py
---- sage-5.12/spkg/build/sage-5.12/doc/common/builder.py.orig	2013-10-16 11:56:12.984167061 -0300
-+++ sage-5.12/spkg/build/sage-5.12/doc/common/builder.py	2013-10-16 11:56:20.433167347 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/doc/common/builder.py.orig sage-5.13/spkg/build/sage-5.13/doc/common/builder.py
+--- sage-5.13/spkg/build/sage-5.13/doc/common/builder.py.orig	2014-01-28 15:58:17.552180497 -0200
++++ sage-5.13/spkg/build/sage-5.13/doc/common/builder.py	2014-01-28 15:58:19.905180587 -0200
 @@ -32,7 +32,7 @@ from sage.env import SAGE_DOC, SAGE_SRC
  #     SAGE_DOC, LANGUAGES, SPHINXOPTS, PAPER, OMIT,
  #     PAPEROPTS, ALLSPHINXOPTS, NUM_THREADS, WEBSITESPHINXOPTS
@@ -10,9 +10,9 @@ diff -up sage-5.12/spkg/build/sage-5.12/doc/common/builder.py.orig sage-5.12/spk
  
  
  ##########################################
-diff -up sage-5.12/spkg/build/sage-5.12/doc/common/conf.py.orig sage-5.12/spkg/build/sage-5.12/doc/common/conf.py
---- sage-5.12/spkg/build/sage-5.12/doc/common/conf.py.orig	2013-10-16 11:56:12.999167062 -0300
-+++ sage-5.12/spkg/build/sage-5.12/doc/common/conf.py	2013-10-16 11:56:20.436167347 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/doc/common/conf.py.orig sage-5.13/spkg/build/sage-5.13/doc/common/conf.py
+--- sage-5.13/spkg/build/sage-5.13/doc/common/conf.py.orig	2014-01-28 15:58:17.562180497 -0200
++++ sage-5.13/spkg/build/sage-5.13/doc/common/conf.py	2014-01-28 15:58:19.908180587 -0200
 @@ -1,5 +1,5 @@
  import sys, os, sphinx
 -from sage.env import SAGE_DOC
@@ -30,10 +30,10 @@ diff -up sage-5.12/spkg/build/sage-5.12/doc/common/conf.py.orig sage-5.12/spkg/b
      mathjax_relative = os.path.join('sagenb','data','mathjax')
  
      # It would be really nice if sphinx would copy the entire mathjax directory,
-diff -up sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py.orig sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py
---- sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py.orig	2013-10-16 11:55:44.534165972 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py	2013-10-16 11:56:20.440167347 -0300
-@@ -88,7 +88,6 @@ class DocTestDefaults(SageObject):
+diff -up sage-5.13/spkg/build/sage-5.13/sage/doctest/control.py.orig sage-5.13/spkg/build/sage-5.13/sage/doctest/control.py
+--- sage-5.13/spkg/build/sage-5.13/sage/doctest/control.py.orig	2014-01-28 15:57:50.711179469 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/doctest/control.py	2014-01-28 15:58:19.909180587 -0200
+@@ -89,7 +89,6 @@ class DocTestDefaults(SageObject):
          self.valgrind = False
          self.massif = False
          self.cachegrind = False
@@ -41,7 +41,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py.orig sage-5.12/s
          self.failed = False
          self.new = False
          self.show_skipped = False
-@@ -210,7 +209,7 @@ class DocTestController(SageObject):
+@@ -211,7 +210,7 @@ class DocTestController(SageObject):
              if options.gdb or options.debug:
                  # Interactive debuggers: "infinite" timeout
                  options.timeout = 0
@@ -50,7 +50,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py.orig sage-5.12/s
                  # Non-interactive debuggers: 48 hours
                  options.timeout = int(os.getenv('SAGE_TIMEOUT_VALGRIND', 48 * 60 * 60))
              elif options.long:
-@@ -806,13 +805,8 @@ class DocTestController(SageObject):
+@@ -822,13 +821,8 @@ class DocTestController(SageObject):
              elif opt.cachegrind:
                  toolname = "cachegrind"
                  flags = os.getenv("SAGE_CACHEGRIND_FLAGS", "")
@@ -64,7 +64,7 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py.orig sage-5.12/s
              if "%s" in flags:
                  flags %= toolname + ".%p" # replace %s with toolname
          cmd += flags + sage_cmd
-@@ -872,10 +866,10 @@ class DocTestController(SageObject):
+@@ -888,10 +882,10 @@ class DocTestController(SageObject):
              0
          """
          opt = self.options
@@ -77,9 +77,9 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/doctest/control.py.orig sage-5.12/s
                  return 2
              return self.run_val_gdb()
          else:
-diff -up sage-5.12/spkg/build/sage-5.12/sage/interfaces/singular.py.orig sage-5.12/spkg/build/sage-5.12/sage/interfaces/singular.py
---- sage-5.12/spkg/build/sage-5.12/sage/interfaces/singular.py.orig	2013-10-16 11:56:13.020167063 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/interfaces/singular.py	2013-10-16 11:56:20.442167347 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/interfaces/singular.py.orig sage-5.13/spkg/build/sage-5.13/sage/interfaces/singular.py
+--- sage-5.13/spkg/build/sage-5.13/sage/interfaces/singular.py.orig	2014-01-28 15:58:17.580180498 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/interfaces/singular.py	2014-01-28 15:58:19.911180587 -0200
 @@ -2149,7 +2149,7 @@ def generate_docstring_dictionary():
      nodes.clear()
      node_names.clear()
@@ -89,9 +89,9 @@ diff -up sage-5.12/spkg/build/sage-5.12/sage/interfaces/singular.py.orig sage-5.
  
      new_node = re.compile("File: singular\.hlp,  Node: ([^,]*),.*")
      new_lookup = re.compile("\* ([^:]*):*([^.]*)\..*")
-diff -up sage-5.12/spkg/build/sage-5.12/sage/misc/latex_macros.py.orig sage-5.12/spkg/build/sage-5.12/sage/misc/latex_macros.py
---- sage-5.12/spkg/build/sage-5.12/sage/misc/latex_macros.py.orig	2013-10-16 11:56:13.029167063 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/misc/latex_macros.py	2013-10-16 11:56:20.443167347 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/misc/latex_macros.py.orig sage-5.13/spkg/build/sage-5.13/sage/misc/latex_macros.py
+--- sage-5.13/spkg/build/sage-5.13/sage/misc/latex_macros.py.orig	2014-01-28 15:58:17.585180498 -0200
++++ sage-5.13/spkg/build/sage-5.13/sage/misc/latex_macros.py	2014-01-28 15:58:19.912180587 -0200
 @@ -142,7 +142,7 @@ def convert_latex_macro_to_mathjax(macro
          return name + ': ["' + defn + '",' + str(num_args) + ']'
  
diff --git a/sagemath-sagenb.patch b/sagemath-sagenb.patch
index 3be21a0..40d81f7 100644
--- a/sagemath-sagenb.patch
+++ b/sagemath-sagenb.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py.orig sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py
---- sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py.orig	2013-10-16 11:57:47.963170699 -0300
-+++ sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py	2013-10-16 11:58:10.515171562 -0300
+diff -up sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py.orig sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py
+--- sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py.orig	2013-10-16 11:57:47.963170699 -0300
++++ sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py	2013-10-16 11:58:10.515171562 -0300
 @@ -33,7 +33,7 @@ class SageNBFlask(Flask):
          self.add_static_path('/javascript', DATA)
          self.add_static_path('/static', DATA)
@@ -10,9 +10,9 @@ diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/flask_version/base.py.o
          import mimetypes
          mimetypes.add_type('text/plain','.jmol')
  
-diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html
---- sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig	2013-10-16 11:58:21.871171997 -0300
-+++ sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html	2013-10-16 11:59:05.075173651 -0300
+diff -up sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html
+--- sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html.orig	2013-10-16 11:58:21.871171997 -0300
++++ sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/notebook/base.html	2013-10-16 11:59:05.075173651 -0300
 @@ -46,7 +46,7 @@ INPUT:
  <!-- Jmol - embedded 3D graphics -->
  <script type="text/javascript" src="/java/jmol/appletweb/Jmol.js"></script>
@@ -22,9 +22,9 @@ diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/html/n
  
  {% if JEDITABLE_TINYMCE and not worksheet.docbrowser() and not worksheet.is_published() %}
  <!-- TinyMCE and jEditable - in-place editing of text cells -->
-diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js
---- sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig	2013-10-16 12:02:59.809182640 -0300
-+++ sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js	2013-10-16 12:03:26.748183672 -0300
+diff -up sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js
+--- sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js.orig	2013-10-16 12:02:59.809182640 -0300
++++ sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmol_lib.js	2013-10-16 12:03:26.748183672 -0300
 @@ -256,9 +256,6 @@ function makeCntrlPanels(url, n, functio
      panelHTML +='<button title="Move to own window" onClick="javascript:void(jmol_popup(\''+n+'\'))">Move to own window</button> arbitrarily resizable.<hr/>';
      //static image to save
@@ -35,9 +35,9 @@ diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/data/sage/js/jmo
      //spin on
      panelHTML +='<input class="worksheet" type="checkbox" value="spin on" onchange="jmol_spin(this.checked,'+n+');" title="Enable/disable spin"/>Spin on';
      //antialaisdisplay (smoothing of objects)
-diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py.orig sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py
---- sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py.orig	2013-10-16 11:59:18.079174149 -0300
-+++ sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py	2013-10-16 11:59:41.357175041 -0300
+diff -up sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py.orig sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py
+--- sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py.orig	2013-10-16 11:59:18.079174149 -0300
++++ sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py	2013-10-16 11:59:41.357175041 -0300
 @@ -2369,7 +2369,7 @@ class Cell(Cell_generic):
                      jmol_script = jmol_file.read()
                      jmol_file.close()
@@ -47,9 +47,9 @@ diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/cell.py
  
                      jmol_file = open(jmol_name, 'w')
                      jmol_file.write(jmol_script)
-diff -up sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py.orig sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py
---- sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py.orig	2013-10-16 11:59:58.863175711 -0300
-+++ sage-5.12/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py	2013-10-16 12:02:45.172182080 -0300
+diff -up sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py.orig sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py
+--- sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py.orig	2013-10-16 11:59:58.863175711 -0300
++++ sage-5.13/spkg/build/sagenb-0.10.7.2/src/sagenb/sagenb/notebook/run_notebook.py	2013-10-16 12:02:45.172182080 -0300
 @@ -46,12 +46,14 @@ sagenb.notebook.misc.DIR = %(cwd)r #We s
  # Flask #
  #########
diff --git a/sagemath-scons.patch b/sagemath-scons.patch
index 6a31b13..568b51f 100644
--- a/sagemath-scons.patch
+++ b/sagemath-scons.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/c_lib/SConstruct.orig sage-5.12/spkg/build/sage-5.12/c_lib/SConstruct
---- sage-5.12/spkg/build/sage-5.12/c_lib/SConstruct.orig	2013-02-23 12:55:48.382841120 -0300
-+++ sage-5.12/spkg/build/sage-5.12/c_lib/SConstruct	2013-02-23 12:56:25.037842523 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/c_lib/SConstruct.orig sage-5.13/spkg/build/sage-5.13/c_lib/SConstruct
+--- sage-5.13/spkg/build/sage-5.13/c_lib/SConstruct.orig	2013-02-23 12:55:48.382841120 -0300
++++ sage-5.13/spkg/build/sage-5.13/c_lib/SConstruct	2013-02-23 12:56:25.037842523 -0300
 @@ -126,18 +126,31 @@ env['PYV']=platform.python_version().rsp
  # The SCons convenience function Split is the only strange thing 
  # to python programmers. It just makes a list by splitting on 
diff --git a/sagemath-scripts.patch b/sagemath-scripts.patch
index b9f92c9..a9c14af 100644
--- a/sagemath-scripts.patch
+++ b/sagemath-scripts.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
---- sage-5.12/spkg/bin/sage.orig	2013-10-16 11:43:15.464137288 -0300
-+++ sage-5.12/spkg/bin/sage	2013-10-16 11:51:01.675155140 -0300
+diff -up sage-5.13/spkg/bin/sage.orig sage-5.13/spkg/bin/sage
+--- sage-5.13/spkg/bin/sage.orig	2014-01-28 15:47:54.216156627 -0200
++++ sage-5.13/spkg/bin/sage	2014-01-28 15:55:18.058173623 -0200
 @@ -11,17 +11,14 @@ usage() {
      echo "  file.<sage|py|spyx> -- run given .sage, .py or .spyx files"
      echo "  -advanced           -- list all command line options"
@@ -64,7 +64,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
      echo "  -maxima [...]       -- run Sage's Maxima with given arguments"
      echo "  -mwrank [...]       -- run Sage's mwrank with given arguments"
      echo "  -python [...]       -- run the Python interpreter"
-@@ -109,79 +96,10 @@ usage_advanced() {
+@@ -109,83 +96,10 @@ usage_advanced() {
      echo
      ####  1.......................26..................................................78
      ####  |.....................--.|...................................................|
@@ -110,11 +110,15 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
 -    echo "  -btnew [...]        -- build and test modified files, options like -tnew"
 -    echo "  -clone [new branch] -- clone a new branch of the Sage library from the"
 -    echo "                         current branch"
--    echo "  -fixdoctests <file.py> -- create <file.py>.out that would pass the doctests"
--    echo "                            and output a patch"
--    echo "  -startuptime [module]  -- display how long each component of Sage takes to"
--    echo "                            start up; optionally specify a module to get more"
--    echo "                            details about that particular module"
+-    echo "  -fixdoctests <file.py> [output_file] [--long]"
+-    echo "                      -- writes a new version of file.py to output_file"
+-    echo "                         (defaults: to file.py.out) that will pass the doctests."
+-    echo "                         With the optional --long argument the long time tests"
+-    echo "                         are also checked."
+-    echo "                         A patch for the new file is printed to stdout."
+-    echo "  -startuptime [module] -- display how long each component of Sage takes to"
+-    echo "                         start up; optionally specify a module to get more"
+-    echo "                         details about that particular module"
 -    echo "  -t [options] <--all|files|dir>"
 -    echo "                      -- test examples in .py, .pyx, .sage, .tex or .rst files"
 -    echo "                         selected options:"
@@ -144,7 +148,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
      echo "  -search_src <string> -- search through all the Sage library code for string"
      echo "  -search_doc <string> -- search through the Sage documentation for string"
      echo "  -grep <string>      -- same as -search_src"
-@@ -201,19 +119,6 @@ usage_advanced() {
+@@ -205,19 +119,6 @@ usage_advanced() {
      echo
      ####  1.......................26..................................................78
      ####  |.....................--.|...................................................|
@@ -164,7 +168,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
      echo "Valgrind memory debugging:"
      echo "  -cachegrind         -- run Sage using Valgrind's cachegrind tool.  The log"
      echo "                         files are named sage-cachegrind.PID can be found in"
-@@ -227,9 +132,6 @@ usage_advanced() {
+@@ -231,9 +132,6 @@ usage_advanced() {
      echo "  -memcheck           -- run Sage using Valgrind's memcheck tool.  The log"
      echo "                         files are named sage-memcheck.PID can be found in"
      echo "                         $DOT_SAGE"
@@ -174,7 +178,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
      echo "  -valgrind           -- this is an alias for -memcheck"
      echo
      echo "You can also use -- before a long option, e.g., 'sage --optional'."
-@@ -249,15 +151,6 @@ if [ "$1" = '--nodotsage' ]; then
+@@ -253,15 +151,6 @@ if [ "$1" = '--nodotsage' ]; then
      exit $status
  fi
  
@@ -190,11 +194,8 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  if [ $# -gt 0 ]; then
    if [ "$1" = '-h' -o "$1" = '-?' -o "$1" = '-help' -o "$1" = '--help' ]; then
       usage
-@@ -267,28 +160,13 @@ if [ $# -gt 0 ]; then
-   fi
- fi
+@@ -274,25 +163,11 @@ fi
  
--
  # Prepare for running Sage, either interactively or non-interactively.
  sage_setup() {
 -    # Check that we're not in a source tarball which hasn't been built yet (#13561).
@@ -219,11 +220,10 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
      if [ ! -d "$IPYTHONDIR" ]; then
          # make sure that $DOT_SAGE exists so that ipython will happily
          # create its config directories there.  If DOT_SAGE doesn't
-@@ -298,21 +176,6 @@ sage_setup() {
-     sage-cleaner &>/dev/null &
+@@ -303,20 +178,6 @@ sage_setup() {
  }
  
--
+ 
 -# Check to see if the whole Sage install tree has moved.  If so,
 -# change various hardcoded paths.  Skip this if we don't have write
 -# access to $SAGE_LOCAL (e.g. when running as a different user) or
@@ -241,7 +241,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  # Start an interactive Sage session, this function never returns.
  interactive_sage() {
      sage_setup
-@@ -353,12 +216,6 @@ if [ "$1" = '-root'  -o "$1" = '--root'
+@@ -357,12 +218,6 @@ if [ "$1" = '-root'  -o "$1" = '--root'
      exit 0
  fi
  
@@ -254,7 +254,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  #####################################################################
  # Run Sage's versions of the standard Algebra/Geometry etc. software
  #####################################################################
-@@ -368,29 +225,24 @@ if [ "$1" = '-axiom' -o "$1" = '--axiom'
+@@ -372,29 +227,24 @@ if [ "$1" = '-axiom' -o "$1" = '--axiom'
      exec axiom "$@"
  fi
  
@@ -288,7 +288,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  fi
  
  if [ "$1" = '-sws2rst' -o "$1" = '--sws2rst' ]; then
-@@ -400,47 +252,37 @@ fi
+@@ -404,47 +254,37 @@ fi
  
  if [ "$1" = '-twistd' -o "$1" = '--twistd' ]; then
      shift
@@ -343,7 +343,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  fi
  
  if [ "$1" = '-python' -o "$1" = '--python' ]; then
-@@ -450,12 +292,12 @@ fi
+@@ -454,12 +294,12 @@ fi
  
  if [ "$1" = '-R' -o "$1" = '--R' ]; then
      shift
@@ -358,7 +358,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  fi
  
  if [ "$1" = '-sh' -o "$1" = '--sh' ]; then
-@@ -576,28 +418,6 @@ EOF
+@@ -580,28 +420,6 @@ EOF
      exit $status
  fi
  
@@ -387,7 +387,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  #####################################################################
  # File conversion
  #####################################################################
-@@ -613,36 +433,15 @@ if [ "$1" = '-rst2sws' -o "$1" = '--rst2
+@@ -617,36 +435,15 @@ if [ "$1" = '-rst2sws' -o "$1" = '--rst2
  fi
  
  #####################################################################
@@ -424,7 +424,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  if [ "$1" = "-inotebook" -o "$1" = '--inotebook' ]; then
      shift
      sage-cleaner &>/dev/null &
-@@ -661,79 +460,7 @@ if [ "$1" = '-grepdoc' -o "$1" = "--grep
+@@ -665,79 +462,7 @@ if [ "$1" = '-grepdoc' -o "$1" = "--grep
     exit 0
  fi
  
@@ -505,7 +505,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
      if [ ! -f  "$DOT_SAGE"/init.sage ]; then
          echo >&2 "init.sage does not exist ... creating"
          touch "$DOT_SAGE"/init.sage
-@@ -749,10 +476,7 @@ if [ "$1" = '-t' -o "$1" = '-bt' -o "$1"
+@@ -753,10 +478,7 @@ if [ "$1" = '-t' -o "$1" = '-bt' -o "$1"
      fi
  fi
  
@@ -517,7 +517,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
      shift
      SAGE_BANNER="no"
      sage_setup
-@@ -766,12 +490,6 @@ if [ "$1" = '-testall' -o "$1" = "--test
+@@ -770,12 +492,6 @@ if [ "$1" = '-testall' -o "$1" = "--test
      exec sage-runtests -a "$@"
  fi
  
@@ -530,7 +530,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  if [ "$1" = '-c' ]; then
      shift
      SAGE_BANNER="no"
-@@ -780,166 +498,6 @@ if [ "$1" = '-c' ]; then
+@@ -784,166 +500,6 @@ if [ "$1" = '-c' ]; then
      exec sage-eval "$@"
  fi
  
@@ -697,7 +697,7 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  if [ "$1" = '-gdb' -o "$1" = "--gdb" ]; then
      shift
      sage_setup
-@@ -988,12 +546,6 @@ if [ "$1" = '-callgrind' -o "$1" = "--ca
+@@ -992,12 +548,6 @@ if [ "$1" = '-callgrind' -o "$1" = "--ca
      exec sage-callgrind "$@"
  fi
  
@@ -710,9 +710,9 @@ diff -up sage-5.12/spkg/bin/sage.orig sage-5.12/spkg/bin/sage
  if [ "$1" = '-startuptime' -o "$1" = '--startuptime' ]; then
      exec sage-startuptime.py "$@"
  fi
-diff -up sage-5.12/spkg/build/sage_scripts-5.12/sage-runtests.orig sage-5.12/spkg/build/sage_scripts-5.12/sage-runtests
---- sage-5.12/spkg/build/sage_scripts-5.12/sage-runtests.orig	2013-10-16 11:51:22.487155937 -0300
-+++ sage-5.12/spkg/build/sage_scripts-5.12/sage-runtests	2013-10-16 11:51:41.514156666 -0300
+diff -up sage-5.13/spkg/build/sage_scripts-5.13/sage-runtests.orig sage-5.13/spkg/build/sage_scripts-5.13/sage-runtests
+--- sage-5.13/spkg/build/sage_scripts-5.13/sage-runtests.orig	2014-01-28 15:46:59.796154543 -0200
++++ sage-5.13/spkg/build/sage_scripts-5.13/sage-runtests	2014-01-28 15:47:42.457156177 -0200
 @@ -54,10 +54,6 @@ if __name__ == "__main__":
                        help="run doctests using Valgrind's cachegrind tool.  The log "
                           "files are named sage-cachegrind.PID and can be found in " +
@@ -724,9 +724,9 @@ diff -up sage-5.12/spkg/build/sage_scripts-5.12/sage-runtests.orig sage-5.12/spk
  
      parser.add_option("-f", "--failed", action="store_true", default=False,
          help="doctest only those files that failed in the previous run")
-diff -up sage-5.12/spkg/build/sage_scripts-5.12/sage-valgrind.orig sage-5.12/spkg/build/sage_scripts-5.12/sage-valgrind
---- sage-5.12/spkg/build/sage_scripts-5.12/sage-valgrind.orig	2013-10-16 11:51:49.837156985 -0300
-+++ sage-5.12/spkg/build/sage_scripts-5.12/sage-valgrind	2013-10-16 11:52:03.594157511 -0300
+diff -up sage-5.13/spkg/build/sage_scripts-5.13/sage-valgrind.orig sage-5.13/spkg/build/sage_scripts-5.13/sage-valgrind
+--- sage-5.13/spkg/build/sage_scripts-5.13/sage-valgrind.orig	2014-01-28 15:46:59.800154543 -0200
++++ sage-5.13/spkg/build/sage_scripts-5.13/sage-valgrind	2014-01-28 15:47:20.081155320 -0200
 @@ -11,7 +11,7 @@ fi
  LOG="$DOT_SAGE"/valgrind/sage-memcheck.%p
  echo "Log file is $LOG"
diff --git a/sagemath-sympy.patch b/sagemath-sympy.patch
index 6da8397..fb9e260 100644
--- a/sagemath-sympy.patch
+++ b/sagemath-sympy.patch
@@ -1,6 +1,6 @@
-diff -up sage-5.12/spkg/build/sage-5.12/sage/env.py.orig sage-5.12/spkg/build/sage-5.12/sage/env.py
---- sage-5.12/spkg/build/sage-5.12/sage/env.py.orig	2013-08-12 15:14:58.586048479 -0300
-+++ sage-5.12/spkg/build/sage-5.12/sage/env.py	2013-08-12 15:15:55.102050643 -0300
+diff -up sage-5.13/spkg/build/sage-5.13/sage/env.py.orig sage-5.13/spkg/build/sage-5.13/sage/env.py
+--- sage-5.13/spkg/build/sage-5.13/sage/env.py.orig	2013-08-12 15:14:58.586048479 -0300
++++ sage-5.13/spkg/build/sage-5.13/sage/env.py	2013-08-12 15:15:55.102050643 -0300
 @@ -85,7 +85,7 @@ _add_variable_or_fallback('HOSTNAME',
  _add_variable_or_fallback('LOCAL_IDENTIFIER','$HOSTNAME.%s'%os.getpid())
          
diff --git a/sagemath.spec b/sagemath.spec
index f172d61..285cfc1 100644
--- a/sagemath.spec
+++ b/sagemath.spec
@@ -17,7 +17,7 @@
 %global with_sage_pexpect	1
 
 # https://bugzilla.redhat.com/show_bug.cgi?id=909510
-%global have_lrcalc		%{packager_debug}
+%global have_lrcalc		1
 
 # Cbc dependency under review is as follow:
 #  first need coin-or-CoinUtils
@@ -67,8 +67,8 @@
 Name:		sagemath
 Group:		Applications/Engineering
 Summary:	A free open-source mathematics software system
-Version:	5.12
-Release:	3%{?dist}
+Version:	5.13
+Release:	1%{?dist}
 # The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
 # Additionally, every $files section has a comment with the license name
 # before files with that license
@@ -670,7 +670,6 @@ rm spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data/sage3d/lib/sage3d.jar
 
 # remove binary egg
 rm -r spkg/build/%{sagenb_pkg}/src/sagenb/sagenb.egg-info
-###
 
 ########################################################################
 %build
@@ -766,10 +765,6 @@ pushd spkg/build/sage-%{version}
     python setup.py install --root=%{buildroot}
     cp -fa c_lib/libcsage.so.0 %{buildroot}%{_libdir}
     ln -sf libcsage.so.0 %{buildroot}%{_libdir}/libcsage.so
-    pushd sage
-	# install sage notebook templates
-	cp -fa server/notebook/templates %{buildroot}%{python_sitearch}/sage/server/notebook
-    popd
     # install documentation sources
     rm -fr $SAGE_DOC/{common,en,fr}
     cp -far doc/{common,de,en,fr,pt,ru,tr} $SAGE_DOC
@@ -1371,6 +1366,9 @@ exit 0
 
 ########################################################################
 %changelog
+* Tue Jan 28 2014 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.13-1
+- Update to sagemath 5.13
+
 * Fri Jan 17 2014 Jerry James <loganjerry@gmail.com> - 5.12-3
 - Also adapt Requires to the new gap subpackage structure
 
diff --git a/sources b/sources
index 7f08855..0c3991a 100644
--- a/sources
+++ b/sources
@@ -1 +1 @@
-21d62a8a61e351c3c124167b3eead46f  sage-5.12.tar
+b549c5ac6b292a2837d92ccf3740c451  sage-5.13.tar