mirror of
https://src.fedoraproject.org/rpms/sagemath.git
synced 2025-04-22 11:45:56 -04:00
Update to sagemath 5.12
This commit is contained in:
pcpa
parent
4f797f23e1
commit
d4a07df7d0
37 changed files with 281 additions and 843 deletions
198
sagemath.spec
198
sagemath.spec
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@ -34,10 +34,6 @@
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# but are required to have the "basic" set of coin-or packages
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%global have_coin_or_Cbc %{packager_debug}
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# https://bugzilla.redhat.com/show_bug.cgi?id=919703
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# https://bitbucket.org/vbraun/libgap/issue/1/please-make-tarball-downloads-available
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%global have_libgap 0
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# https://bugzilla.redhat.com/show_bug.cgi?id=914936
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%ifarch %{ix86} x86_64
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%global have_fes %{packager_debug}
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@ -57,11 +53,9 @@
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%global pexpect_pkg pexpect-2.0.p5
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%global polytopes_db_pkg polytopes_db-20120220
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%global rubiks_pkg rubiks-20070912.p18
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%global sagenb_pkg sagenb-0.10.4
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%global sagenb_pkg sagenb-0.10.7.2
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%global sagetex_pkg sagetex-2.3.4
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%global sagemath_share %{_datadir}/%{name}
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%global SAGE_ROOT %{_libdir}/sagemath
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%global SAGE_LOCAL %{SAGE_ROOT}/local
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%global SAGE_SRC %{SAGE_ROOT}/src
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@ -73,8 +67,8 @@
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Name: sagemath
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Group: Applications/Engineering
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Summary: A free open-source mathematics software system
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Version: 5.10
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Release: 5%{?dist}
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Version: 5.12
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Release: 1%{?dist}
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# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
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# Additionally, every $files section has a comment with the license name
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# before files with that license
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@ -108,18 +102,13 @@ Patch1: %{name}-gmp.patch
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# Set of patches to work with system wide packages
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Patch2: %{name}-scripts.patch
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# Do not mandate a patched ntl. It was requested to ntl upstream to
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# provide an api to match what sagemath expects.
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# http://shoup.net/pipermail/ntl_shoup.net/2012-April/000033.html
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Patch3: %{name}-unpatched_ntl.patch
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# Adapt to ntl 6.0.0.
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Patch4: %{name}-ntl6.patch
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Patch3: %{name}-ntl6.patch
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# remove call to not implemented sagemath "is_package_installed" interfaces
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# need to package coin-or solver in fedora
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# remove check for non free solvers
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Patch5: %{name}-extensions.patch
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Patch4: %{name}-extensions.patch
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# helper to:
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# o respect a DESTDIR environment variable
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@ -127,101 +116,82 @@ Patch5: %{name}-extensions.patch
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# o minor change to help in incremental builds by avoiding rebuilding
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# files
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# o do not assume there is an installed sagemath
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Patch6: %{name}-rpmbuild.patch
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Patch5: %{name}-rpmbuild.patch
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# build documentation in buildroot environment
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Patch7: %{name}-sagedoc.patch
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Patch6: %{name}-sagedoc.patch
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# sage notebook rpm and system environment adjustments
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Patch8: %{name}-sagenb.patch
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Patch7: %{name}-sagenb.patch
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# do not attempt to create state files in system directories
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Patch9: %{name}-readonly.patch
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Patch8: %{name}-readonly.patch
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# force coercion of ecl t_string to ecl t_base_string
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# this is hackish and only required if ecl is built with unicode support
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Patch10: %{name}-ecl-unicode.patch
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Patch9: %{name}-ecl-unicode.patch
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# do not link explicitly to png12
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Patch11: %{name}-png.patch
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Patch10: %{name}-png.patch
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# work with all maxima-runtime lisp backend packages
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Patch12: %{name}-maxima.patch
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Patch11: %{name}-maxima.patch
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# execute 4ti2 programs in $PATH not in $SAGE_ROOT/local/bin
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Patch13: %{name}-4ti2.patch
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Patch12: %{name}-4ti2.patch
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# http://trac.sagemath.org/sage_trac/ticket/12992
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# http://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=1317
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Patch14: %{name}-pari.patch
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# in fedora 18 it was updated to latest fplll
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Patch15: %{name}-fplll.patch
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Patch13: %{name}-pari.patch
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# Portuguese translations: http://trac.sagemath.org/sage_trac/ticket/12822
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Patch16: trac_12502_pt_translation_of_a_tour_of_sage_rebase1.patch
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Patch17: trac_12822_pt_translation_of_tutorial.patch
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Patch18: trac_12822_pt_translation_of_tutorial_rev1.patch
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# wrappers for distros with libmpc 0.9
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Patch19: %{name}-libmpc.patch
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Patch14: trac_12502_pt_translation_of_a_tour_of_sage_rebase1.patch
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Patch15: trac_12822_pt_translation_of_tutorial.patch
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Patch16: trac_12822_pt_translation_of_tutorial_rev1.patch
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# use jmol itself to export preview images
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# FIXME besides not using X and told so, fails if DISPLAY is not set
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Patch20: %{name}-jmol.patch
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# adapt for maxima 5.29.1 package
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Patch21: %{name}-maxima.system.patch
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Patch17: %{name}-jmol.patch
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# only cremona mini database built and installed
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# FIXME add a package with the full cremona database
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# FIXME actually it should be already available in pari-elldata
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Patch22: %{name}-cremona.patch
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Patch18: %{name}-cremona.patch
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# lrslib is a requires
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Patch23: %{name}-lrslib.patch
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Patch19: %{name}-lrslib.patch
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# nauty cannot be packaged due to license restrictions
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# http://cs.anu.edu.au/~bdm/nauty/
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# http://pallini.di.uniroma1.it/
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Patch24: %{name}-nauty.patch
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Patch20: %{name}-nauty.patch
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# gap hap package not (yet) available
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# http://www-gap.mcs.st-and.ac.uk/Packages/hap.html
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Patch25: %{name}-gap-hap.patch
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Patch21: %{name}-gap-hap.patch
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# Patch to enable lrcalc once review request is done in Fedora
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Patch26: %{name}-lrcalc.patch
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Patch22: %{name}-lrcalc.patch
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# Patch to enable cbc once review requests are done in Fedora
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Patch27: %{name}-cbc.patch
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Patch23: %{name}-cbc.patch
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# Patch to enable libgap once review request is done in Fedora
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Patch28: %{name}-libgap.patch
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# Patch to disable libgap because it is not optional by default
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Patch29: %{name}-nolibgap.patch
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# Use system gap directories
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Patch24: %{name}-libgap.patch
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# Patch to enable fes once review requests are done in Fedora
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Patch30: %{name}-fes.patch
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Patch25: %{name}-fes.patch
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# Get package to build with known problem if not yet updated to pari 2.6.
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Patch31: %{name}-nopari2.6.patch
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Patch26: %{name}-nopari2.6.patch
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# sagemath 5.8 (optionally) requires cryptominisat 2.9.6 (in rawhide)
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# sagemath 5.8 (optionally) requires cryptominisat 2.9.6 (in >= f19)
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# and does not work with cryptominisat 2.9.5 (in f18)
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Patch32: %{name}-cryptominisat.patch
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Patch27: %{name}-cryptominisat.patch
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# Adapt to m4rie 20130416
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Patch33: %{name}-m4rie.patch
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# Until cython is fixed for f18 and f19; just override wrong cython definition
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# https://bugzilla.redhat.com/show_bug.cgi?id=961372
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Patch34: %{name}-rh_bz_961372.patch
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# Required if running python-flask-0.10.1
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# sagemath expects python-flask-0.9
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Patch35: %{name}-flask.patch
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# Side effect of using distro packages
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# https://bugzilla.redhat.com/show_bug.cgi?id=974769
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Patch28: %{name}-sympy.patch
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BuildRequires: 4ti2
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BuildRequires: atlas-devel
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@ -261,9 +231,7 @@ BuildRequires: iml-devel
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BuildRequires: L-function-devel
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BuildRequires: libfac-devel
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BuildRequires: libfplll-devel
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%if %{have_libgap}
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BuildRequires: libgap-devel
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%endif
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BuildRequires: libmpc-devel
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BuildRequires: linbox-devel
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%if %{have_lrcalc}
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@ -345,7 +313,6 @@ Requires: python-ipython
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Requires: python-matplotlib
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Requires: python-networkx
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Requires: python-polybori
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Requires: python-sphinx
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Requires: python-twisted-web
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Requires: python-twisted-web2
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Requires: python-ZODB3
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@ -369,6 +336,7 @@ Requires: tachyon
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Requires: texlive
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Requires: vecmath
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# Missing build requires on armv7hl
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ExclusiveArch: %{ix86} x86_64
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%description
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@ -643,11 +611,8 @@ popd
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%patch0 -p1
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%patch1 -p1
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%patch2 -p1
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%if 0%{?fedora} < 19
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%patch3 -p1
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%else
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%patch4 -p1
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%endif
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%patch5 -p1
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%patch6 -p1
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%patch7 -p1
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@ -657,73 +622,44 @@ popd
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%patch11 -p1
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%patch12 -p1
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%patch13 -p1
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%patch14 -p1
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%if 0%{?fedora} >= 18
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%patch15 -p1
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%endif
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pushd spkg/build/sage-%{version}
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mkdir -p doc/pt/a_tour_of_sage/
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cp -fa doc/en/a_tour_of_sage/*.png doc/pt/a_tour_of_sage/
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%patch14 -p1
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%patch15 -p1
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%patch16 -p1
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%patch17 -p1
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%patch18 -p1
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popd
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%if 0%{?fedora} <= 19
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%patch17 -p1
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%patch18 -p1
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%patch19 -p1
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%endif
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%patch20 -p1
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%if 0%{?fedora} >= 18
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%if 0%{?fedora} < 20
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%patch21 -p1
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%endif
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%endif
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%patch22 -p1
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%patch23 -p1
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%patch24 -p1
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%patch25 -p1
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%if %{have_lrcalc}
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%patch26 -p1
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%patch22 -p1
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%endif
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# other coin-or packages are build requires or coin-or-Cbc
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%if %{have_coin_or_Cbc}
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%patch27 -p1
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%patch23 -p1
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%endif
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%if %{have_libgap}
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%patch28 -p1
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%else
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%patch29 -p1
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%endif
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%patch24 -p1
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%if %{have_fes}
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%patch30 -p1
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%patch25 -p1
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%endif
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%patch31 -p1
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%patch26 -p1
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%patch27 -p1
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%patch28 -p1
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%if 0%{?fedora} >= 19
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%patch32 -p1
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%endif
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%if 0%{?fedora} == 19
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%patch33 -p1
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%endif
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%if 0%{?fedora} <= 19
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%patch34 -p1
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%endif
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%if 0%{?fedora} >= 20
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%patch35 -p1
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%endif
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sed -e 's|@@SAGE_ROOT@@|%{SAGE_ROOT}|' \
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-e 's|@@SAGE_DOC@@|%{SAGE_DOC}|' \
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-i spkg/build/sage-%{version}/sage/env.py
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#------------------------------------------------------------------------
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# ensure proper/preferred libatlas is in linker path
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@ -738,6 +674,7 @@ rm spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data/sage3d/lib/sage3d.jar
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# remove binary egg
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rm -r spkg/build/%{sagenb_pkg}/src/sagenb/sagenb.egg-info
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###
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########################################################################
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%build
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@ -745,34 +682,27 @@ export CFLAGS="%{optflags}"
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export CXXFLAGS="%{optflags}"
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export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
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export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
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export SAGE_SRC=%{buildroot}%{SAGE_SRC}
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# Avoid buildroot in gcc command line (use _builddir instead)
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export SAGE_SRC="$PWD/spkg/build/sage-%{version}"
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export SAGE_FORTRAN=%{_bindir}/gfortran
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export SAGE_FORTRAN_LIB=`gfortran --print-file-name=libgfortran.so`
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%if 0%{?fedora} > 20
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export SAGE_BLAS=satlas
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%endif
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export DESTDIR=%{buildroot}
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# Use file in /tmp because there are issues with long pathnames
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export DOT_SAGE=/tmp/sage$$
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mkdir -p $DOT_SAGE/tmp
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# match system packages as sagemath packages
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export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
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export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
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export SAGE_SRC=%{buildroot}%{SAGE_SRC}
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mkdir -p $SAGE_ROOT $SAGE_LOCAL $SAGE_SRC
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ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_SRC/sage
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mkdir -p $SAGE_ROOT $SAGE_LOCAL #%{buildroot}%{SAGE_SRC}
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ln -sf %{_libdir} $SAGE_LOCAL/lib
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ln -sf %{_includedir} $SAGE_LOCAL/include
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ln -sf %{_datadir} $SAGE_LOCAL/share
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#ln -sf $SAGE_SRC/sage %{buildroot}%{SAGE_SRC}/sage
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export PATH=%{buildroot}%{_bindir}:$PATH
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export PYTHONPATH=%{buildroot}%{python_sitearch}:$PYTHONPATH
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#------------------------------------------------------------------------
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pushd spkg/build/sage-%{version}
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sed -e 's|@@libdir@@|%{_libdir}|g' \
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-i setup.py
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pushd c_lib
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# scons ignores most environment variables
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# and does not have soname support
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@ -1036,11 +966,7 @@ export PATH=$SAGE_LOCAL/bin:\$PATH
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export SINGULARPATH=%{_libdir}/Singular/LIB
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export SINGULAR_BIN_DIR=%{_libdir}/Singular
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##export PYTHONPATH="$SAGE_PYTHONPATH:\$SAGE_LOCAL/bin"
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%if 0%{?fedora} > 20
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export SAGE_CBLAS=satlas
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%else
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export SAGE_CBLAS=cblas
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%endif
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export SAGE_FORTRAN=%{_bindir}/gfortran
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export SAGE_FORTRAN_LIB=\`gfortran --print-file-name=libgfortran.so\`
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export SYMPOW_DIR="\$DOT_SAGE/sympow"
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@ -1186,23 +1112,19 @@ find %{buildroot}%{SAGE_DOC} -name .buildinfo -exec rm {} \;
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rm -fr %{buildroot}%{SAGE_DOC}/output/inventory
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find %{buildroot}%{SAGE_DOC} -type d -name _sources | xargs rm -fr
|
||||
|
||||
rm %{buildroot}%{python_sitearch}/sagenb/data/mathjax/.gitignore \
|
||||
%{buildroot}%{python_sitearch}/sagenb/data/mathjax/docs/.gitignore
|
||||
|
||||
# remove bundles fonts
|
||||
rm -r %{buildroot}%{python_sitearch}/sagenb/data/mathjax/fonts
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||||
|
||||
# remove .po files
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||||
rm %{buildroot}%{python_sitearch}/sagenb/translations/*/LC_MESSAGES/*.po
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||||
|
||||
# remove zero length files
|
||||
rm %{buildroot}%{python_sitearch}/sage/server/notebook/compress/all.py* \
|
||||
%{buildroot}%{python_sitearch}/sage/misc/test_cpickle_sage.py*
|
||||
|
||||
%if !%{with_sage3d}
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rm -r %{buildroot}%{python_sitearch}/sagenb/data/sage3d
|
||||
%endif
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||||
|
||||
# remove cache files
|
||||
rm -r %{buildroot}%{python_sitearch}/sagenb/data/.webassets-cache
|
||||
|
||||
# last install command
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||||
rm -fr $DOT_SAGE
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||||
|
||||
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@ -1391,6 +1313,8 @@ exit 0
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%{python_sitearch}/sagenb/data/json
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# ASL 2.0
|
||||
%{python_sitearch}/sagenb/data/mathjax
|
||||
# Empty (do not run doctests flag file)
|
||||
%{python_sitearch}/sagenb/data/nodoctest.py*
|
||||
# BSD
|
||||
%{python_sitearch}/sagenb/data/openid-realselector
|
||||
# GPLv2+
|
||||
|
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@ -1401,6 +1325,8 @@ exit 0
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%endif
|
||||
# LGPLv2+
|
||||
%{python_sitearch}/sagenb/data/tiny_mce
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# Auto generated files
|
||||
%{python_sitearch}/sagenb/data/webassets_generated
|
||||
# LGPLv2+
|
||||
%{python_sitearch}/sagenb/data/zorn
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# GPLv2+
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||||
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@ -1449,8 +1375,8 @@ exit 0
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########################################################################
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%changelog
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* Fri Oct 4 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.10-5
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- Rebuild with newer rawhide atlas.
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* Wed Oct 16 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.12-1
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- Update to sagemath 5.12.
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* Sat Sep 14 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.10-4
|
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- Do not hardcode SAGE_BROWSER (#967251)
|
||||
|
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Add table
Add a link
Reference in a new issue