mirror of
https://src.fedoraproject.org/rpms/sagemath.git
synced 2025-04-22 11:45:56 -04:00
Changes:
- Improve the -ecm patch. - Add -formatargspec patch to silence doc-building warnings. - Add -data-elliptic_curves_large subpackage. - Build with bliss, coxeter3, and mcqd support. - Fix typo that made the singular.hlp file inaccessible. - Add more gap packages to get closer to the set shipped by upstream. - Refactor Requires so they apply to the correct subpackages. - More python 3 patching due to changes in python 3.8. - Use upstream's method of installing jupyter support. - Obsolete the sagemath-notebook-export subpackage.
This commit is contained in:
Jerry James
parent
e4003eb1b4
commit
ecae6482c5
12 changed files with 723 additions and 176 deletions
225
sagemath.spec
225
sagemath.spec
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@ -40,6 +40,7 @@
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%global combinatorial_designs_pkg combinatorial_designs-20140630
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%global conway_polynomials_pkg conway_polynomials-0.5
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%global cremona_ver 2016-10-17
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%global elliptic_curves_pkg elliptic_curves-0.8.1
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%global flintqs_pkg flintqs-1.0
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%global graphs_pkg graphs-20161026
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@ -76,9 +77,11 @@
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%endif
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# Spkg equivalents of required rpms; we pretend they are installed as spkgs.
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# The version numbers shown are those of the latest released spkg, if the Fedora
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# version is not behind.
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%global SAGE_REQUIRED_PKGS 4ti2-1.6.7 cbc-2.9.4 CoCoALib-0.99564 cryptominisat-5.6.6 gap_packages-4.10.1 gmp-6.1.2 libsirocco-2.0 lrslib-062+autotools-2017-03-03 qepcad-B.1.71 saclib-2.2.7 surf-1.0.6-gcc6
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%global SAGE_REQUIRED_PKGS 4ti2-1.6.9 bliss-0.73 cbc-2.10.3 CoCoALib-0.99601 coxeter3-1.1 cryptominisat-5.6.8 database_cremona_ellcurve-%{cremona_ver} gap_packages-4.10.2 gmp-6.1.2 libsirocco-2.0 lrslib-070 mcqd-1.0 qepcad-B.1.72 saclib-2.2.7 surf-1.0.6-gcc6
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%ifarch %{ix86} x86_64
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%global SAGE_REQUIRED_PKGS %{SAGE_REQUIRED_PKGS} fes-0.2
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%endif
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%global SAGE_ROOT %{_libdir}/sagemath
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%global SAGE_LOCAL %{SAGE_ROOT}/local
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@ -92,14 +95,15 @@
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Name: sagemath
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Summary: A free open-source mathematics software system
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Version: 8.8
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Release: 4%{?dist}
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Release: 5%{?dist}
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# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
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# Additionally, every $files section has a comment with the license name
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# before files with that license
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License: ASL 2.0 and BSD and GPL+ and GPLv2+ and LGPLv2+ and MIT and Public Domain
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URL: http://www.sagemath.org
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Source0: http://files.sagemath.org/src/sage-%{version}.tar.gz
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Source1: gprc.expect
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Source1: https://github.com/JohnCremona/ecdata/archive/%{cremona_ver}/ecdata-%{cremona_ver}.tar.gz
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Source2: gprc.expect
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# Follow maxima's ExclusiveArch
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ExclusiveArch: aarch64 %{arm} %{ix86} x86_64 ppc sparcv9
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@ -143,9 +147,8 @@ Patch9: %{name}-4ti2.patch
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# FIXME besides not using X and told so, fails if DISPLAY is not set
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Patch10: %{name}-jmol.patch
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# only cremona mini database built and installed
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# FIXME add a package with the full cremona database
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# FIXME actually it should be already available in pari-elldata
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# tell the user how to install the large Cremona database
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# add a missing commit() that causes large database construction to fail
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Patch11: %{name}-cremona.patch
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# adapt to python 3 and cython running in python 3 mode
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@ -212,13 +215,20 @@ Patch31: %{name}-env.patch
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# Make notebook minimally function until upstream finally removes it
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Patch32: %{name}-sagenb-python3.patch
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# Replace python's deprecated formatargspec with a custom implementation
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# https://trac.sagemath.org/ticket/27971
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# https://git.sagemath.org/sage.git/commit/?id=bbd5b28fc8e451bea4f87c2f2b0c27586386262a
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Patch33: %{name}-formatargspec.patch
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BuildRequires: 4ti2
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BuildRequires: arb-devel
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BuildRequires: bliss-devel
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BuildRequires: boost-devel
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BuildRequires: brial-devel
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BuildRequires: cddlib-tools
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BuildRequires: cliquer-devel
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BuildRequires: coin-or-Cbc-devel
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BuildRequires: coxeter-devel
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BuildRequires: desktop-file-utils
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BuildRequires: dvipng
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BuildRequires: ecl
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@ -234,8 +244,13 @@ BuildRequires: gap-libs
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BuildRequires: gap-pkg-atlasrep
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BuildRequires: gap-pkg-crime
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BuildRequires: gap-pkg-design
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BuildRequires: gap-pkg-forms
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BuildRequires: gap-pkg-francy
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BuildRequires: gap-pkg-guava
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BuildRequires: gap-pkg-hapcryst
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BuildRequires: gap-pkg-hecke
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BuildRequires: gap-pkg-jupyterviz
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BuildRequires: gap-pkg-singular
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BuildRequires: gap-pkg-sonata
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BuildRequires: gap-pkg-toric
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BuildRequires: gc-devel
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@ -273,6 +288,7 @@ BuildRequires: m4ri-devel
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BuildRequires: m4rie-devel
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BuildRequires: mathjax
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BuildRequires: maxima-runtime-ecl
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BuildRequires: mcqd-devel
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BuildRequires: mpfi-devel
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BuildRequires: nauty
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BuildRequires: ntl-devel
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@ -317,12 +333,14 @@ BuildRequires: python3dist(networkx)
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BuildRequires: python3dist(notebook)
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%if %{with bundled_ipython}
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BuildRequires: python3dist(path.py)
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%endif
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BuildRequires: python3dist(pathlib2)
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%endif
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%if %{without bundled_pexpect}
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BuildRequires: python3dist(pexpect)
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%endif
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%if %{with bundled_ipython}
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BuildRequires: python3dist(pickleshare)
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%endif
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BuildRequires: python3dist(pip)
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BuildRequires: python3dist(pkgconfig)
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BuildRequires: python3dist(psutil)
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@ -367,28 +385,58 @@ BuildRequires: xorg-x11-server-Xvfb
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BuildRequires: zlib-devel
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BuildRequires: zn_poly-devel
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Requires: hicolor-icon-theme
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Requires: %{name}-core
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Requires: %{name}-data
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%if %{with docs}
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Requires: %{name}-doc-en
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%endif
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Requires: %{name}-notebook
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Requires: %{name}-rubiks
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Requires: %{name}-sagetex
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%if %{with bundled_thebe}
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Provides: bundled(thebe) = %{thebe_ver}
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%endif
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%if %{with bundled_threejs}
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Provides: bundled(threejs) = %{threejs_ver}
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%endif
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# This can be removed when Fedora 30 reaches EOL
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Obsoletes: %{name}-notebook-export < 8.8-5
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Provides: %{name}-notebook-export = %{version}-%{release}
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%description
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Sage is a free open-source mathematics software system licensed
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under the GPL. It combines the power of many existing open-source
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packages into a common Python-based interface.
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#------------------------------------------------------------------------
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%package core
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Summary: Open Source Mathematics Software
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Requires: %{name}%{?_isa} = %{version}-%{release}
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Requires: 4ti2
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Requires: cddlib-tools
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Requires: ecl
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Requires: gap
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Requires: GAPDoc
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Requires: gap-pkg-atlasrep
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Requires: gap-pkg-crime
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Requires: gap-pkg-design
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Requires: gap-pkg-forms
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Requires: gap-pkg-francy
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Requires: gap-pkg-guava
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Requires: gap-pkg-hapcryst
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Requires: gap-pkg-hecke
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Requires: gap-pkg-jupyterviz
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Requires: gap-pkg-sonata
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Requires: gap-pkg-toric
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Requires: gfan
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Requires: gmp-ecm
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Requires: hicolor-icon-theme
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Requires: jmol
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Requires: jsmol
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Requires: jsmath-fonts
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Requires: jsmol
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Requires: latte-integrale
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Requires: lrslib-utils
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Requires: mathjax
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Requires: maxima-gui
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Requires: maxima-runtime-ecl
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Requires: nauty
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Requires: palp
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@ -401,10 +449,6 @@ Requires: python3dist(cysignals)
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Requires: python3dist(cvxopt)
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Requires: python3dist(cython)
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Requires: python3dist(docutils)
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Requires: python3dist(flask-autoindex)
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Requires: python3dist(flask-babel)
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Requires: python3dist(flask-openid)
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Requires: python3dist(flask-silk)
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Requires: python3dist(fpylll)
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Requires: python3dist(future)
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Requires: python3dist(gmpy2)
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@ -416,71 +460,41 @@ Requires: python3dist(ipykernel)
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%if %{without bundled_ipython}
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Requires: python3dist(ipython)
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%endif
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Requires: python3dist(kiwisolver)
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Requires: python3dist(matplotlib)
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Requires: python3dist(networkx)
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Requires: python3dist(notebook)
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%if %{with bundled_ipython}
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Requires: python3dist(path.py)
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%endif
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Requires: python3dist(pathlib2)
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%endif
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%if %{without bundled_pexpect}
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Requires: python3dist(pexpect)
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%endif
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%if %{with bundled_ipython}
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Requires: python3dist(pickleshare)
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Requires: python3dist(pillow)
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%endif
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Requires: python3dist(pplpy)
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Requires: python3dist(psutil)
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Requires: python3dist(ptyprocess)
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Requires: python3dist(pycryptosat)
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Requires: python3dist(rpy2)
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Requires: python3dist(scipy)
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Requires: python3dist(send2trash)
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%if %{with bundled_ipython}
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BuildRequires: python3dist(simplegeneric)
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%endif
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Requires: python3dist(six)
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Requires: python3dist(speaklater)
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Requires: python3dist(sphinx)
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Requires: python3dist(sympy)
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Requires: python3dist(twisted)
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%if %{with bundled_ipython}
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Requires: python3dist(pyzmq)
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%endif
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Requires: python3dist(rpy2)
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Requires: python3dist(scipy)
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%if %{with bundled_ipython}
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Requires: python3dist(simplegeneric)
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%endif
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Requires: python3dist(six)
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Requires: python3dist(sphinx)
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Requires: python3dist(sympy)
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Requires: python3dist(zodb3)
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Requires: qepcad-B
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Requires: R
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Requires: %{name}-core
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Requires: %{name}-data
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%if %{with docs}
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Requires: %{name}-doc-en
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%endif
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Requires: %{name}-notebook
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Requires: %{name}-rubiks
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Requires: %{name}-sagetex
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Requires: Singular
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# Required by widgetsnbextension and thebe; remove when they are unbundled
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Requires: stix-math-fonts
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Requires: sympow
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Requires: tachyon
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Requires: texlive
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Requires: vecmath
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%if %{with bundled_thebe}
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Provides: bundled(thebe) = %{thebe_ver}
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%endif
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%if %{with bundled_threejs}
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Provides: bundled(threejs) = %{threejs_ver}
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%endif
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%description
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Sage is a free open-source mathematics software system licensed
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under the GPL. It combines the power of many existing open-source
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packages into a common Python-based interface.
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#------------------------------------------------------------------------
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%package core
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Summary: Open Source Mathematics Software
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Requires: %{name}%{?_isa} = %{version}-%{release}
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%if %{with bundled_ipython}
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Provides: bundled(ipython) = %{ipython_ver}
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Provides: bundled(prompt_toolkit) = %{prompt_toolkit_ver}
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@ -539,11 +553,22 @@ BuildArch: noarch
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Includes two databases:
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* A small subset of the data in John Cremona's database of elliptic curves up
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to conductor 10000. See http://www.warwick.ac.uk/~masgaj/ftp/data/ or
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http://sage.math.washington.edu/cremona/INDEX.html
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to conductor 10000. See http://johncremona.github.io/ecdata/.
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* William Stein's database of interesting curves
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#------------------------------------------------------------------------
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%package data-elliptic_curves_large
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Summary: Large database of elliptic curves
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Requires: %{name}-data = %{version}-%{release}
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BuildArch: noarch
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%description data-elliptic_curves_large
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John Cremona's full database of elliptic curves, and also data related to
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the BSD conjecture and modular degrees for all of these curves, and
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generators for the Mordell-Weil groups. See
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http://johncremona.github.io/ecdata/.
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#------------------------------------------------------------------------
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%package data-etc
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Summary: Extcode for Sagemath
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@ -665,6 +690,9 @@ This package contains the Turkish %{name} documentation.
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Summary: The Sage Notebook
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Requires: %{name}%{?_isa} = %{version}-%{release}
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Requires: python-jupyter-filesystem
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Requires: python3dist(flask-silk)
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Requires: python3dist(send2trash)
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Requires: vecmath
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%description notebook
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The Sage Notebook is a web-based graphical user interface for
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@ -697,6 +725,7 @@ Eric Dietz (GPL) http://www.wrongway.org/?rubiksource
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%package sagetex
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Summary: Sagemath into LaTeX documents
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Requires: %{name}%{?_isa} = %{version}-%{release}
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Requires: python3dist(pillow)
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Requires: tex(color.sty)
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Requires: tex(fancyvrb.sty)
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Requires: tex(graphicx.sty)
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@ -718,6 +747,7 @@ computations, and plots from the Sage mathematics software suite
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########################################################################
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%prep
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%setup -q -n sage-%{version}
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%setup -q -n sage-%{version} -T -D -a 1
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pushd build/pkgs/combinatorial_designs
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tar jxf ../../../upstream/%{combinatorial_designs_pkg}.tar.bz2
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@ -877,6 +907,7 @@ popd
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%patch30
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%patch31
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%patch32
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%patch33
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sed -e 's|@@SAGE_ROOT@@|%{SAGE_ROOT}|' \
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-e 's|@@SAGE_DOC@@|%{SAGE_DOC}|' \
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@ -1078,6 +1109,7 @@ export SAGE_SHARE=%{buildroot}%{SAGE_SHARE}
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export SAGE_ETC=%{buildroot}%{SAGE_ETC}
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export SAGE_EXTCODE=%{buildroot}%{SAGE_ETC}
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export SAGE_DOC=%{buildroot}%{SAGE_DOC}
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export SAGE_PYTHON3=yes
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export SAGE_PYTHONPATH=%{buildroot}%{SAGE_PYTHONPATH}
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export DESTDIR=%{buildroot}
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export SAGE_DEBUG=no
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@ -1116,7 +1148,7 @@ pushd src/ext
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fi
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done
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cp -far pari $SAGE_ETC
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cp -fa %{SOURCE1} $SAGE_ETC
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cp -fa %{SOURCE2} $SAGE_ETC
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popd
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#------------------------------------------------------------------------
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@ -1518,7 +1550,10 @@ rm -r %{buildroot}%{python3_sitearch}/sage_setup
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mkdir -p %{buildroot}%{SAGE_SPKG_INST}
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pushd upstream
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for file in *.tar.*; do
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mkdir %{buildroot}%{SAGE_SPKG_INST}/$(echo $file | sed -e 's|\.tar.*||')
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mkdir %{buildroot}%{SAGE_SPKG_INST}/${file%.tar.*}
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done
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for file in *.zip; do
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mkdir %{buildroot}%{SAGE_SPKG_INST}/${file%.zip}
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done
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popd
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pushd %{buildroot}%{SAGE_SPKG_INST}
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@ -1542,7 +1577,7 @@ done
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if [ \$INSTALLED = no ]; then
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exit 0
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fi
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LIST=\$(cd %{SAGE_SPKG_INST}; echo *)
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LIST=\$(ls -1 %{SAGE_SPKG_INST})
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if [ \$NOVERSION = false ]; then
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for pkg in \$LIST; do
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echo \$pkg | sed -e 's/-/ /'
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@ -1567,18 +1602,35 @@ chmod +x %{buildroot}%{SAGE_LOCAL}/bin/sage-list-packages
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#------------------------------------------------------------------------
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# Jupyter integration
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mkdir -p %{buildroot}%{_datadir}/jupyter/kernels/sagemath
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pushd %{buildroot}%{_datadir}/jupyter/kernels/sagemath
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ln -s %{_docdir}/%{name}/html/en doc
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ln -s %{SAGE_ETC}/notebook-ipython/logo-64x64.png logo-64x64.png
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ln -s %{SAGE_ETC}/notebook-ipython/logo.svg logo.svg
|
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cat > kernel.json << EOF
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{"display_name": "SageMath %{version}", "argv": ["%{_bindir}/sage", "--python", "-m", "sage.repl.ipython_kernel", "-f", "{connection_file}"]}
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pushd src
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%{__python3} << EOF
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from sage.repl.ipython_kernel.install import SageKernelSpec
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SageKernelSpec.update(prefix='%{buildroot}%{_prefix}')
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EOF
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popd
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# Allow displaying 3d plots in the jupyter notebook
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mkdir -p %{buildroot}%{_datadir}/jupyter/nbextensions/
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ln -sf %{_jsdir}/jsmol %{buildroot}%{_datadir}/jupyter/nbextensions/
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# Remove buildroot from the json and symbolic links
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pushd %{buildroot}%{_datadir}/jupyter
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sed -i 's,%{buildroot},,g' kernels/sagemath/kernel.json
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for link in $(find . -type l); do
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target=$(readlink $link)
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if [[ "$target" =~ "%{buildroot}" ]]; then
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rm $link
|
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ln -s ${target#%{buildroot}} $link
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fi
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done
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||||
popd
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
# Build the large Cremona database
|
||||
PATH=%{buildroot}%{SAGE_LOCAL}/bin:$PATH
|
||||
PYTHONPATH=%{buildroot}%{SAGE_PYTHONPATH}:%{buildroot}%{python3_sitearch}
|
||||
cat > cremona.sage << EOF
|
||||
import sage.databases.cremona
|
||||
db_path = '%{buildroot}%{SAGE_SHARE}/cremona/cremona'
|
||||
c = sage.databases.cremona.LargeCremonaDatabase(db_path, False, True)
|
||||
c._init_from_ftpdata('ecdata-%{cremona_ver}')
|
||||
EOF
|
||||
%{buildroot}%{SAGE_LOCAL}/bin/sage cremona.sage
|
||||
|
||||
# last install command
|
||||
rm -fr $DOT_SAGE
|
||||
|
|
@ -1604,6 +1656,7 @@ rm -fr $DOT_SAGE
|
|||
%{SAGE_LOCAL}/lib
|
||||
%{SAGE_LOCAL}/share
|
||||
%{SAGE_LOCAL}/var
|
||||
%exclude %{SAGE_LOCAL}/var/lib/sage/installed/database_cremona_ellcurve-%{cremona_ver}
|
||||
%{SAGE_ROOT}/doc
|
||||
%{SAGE_ROOT}/devel
|
||||
%{SAGE_ROOT}/share
|
||||
|
|
@ -1661,9 +1714,17 @@ rm -fr $DOT_SAGE
|
|||
#------------------------------------------------------------------------
|
||||
%files data-elliptic_curves
|
||||
# GPLv2+
|
||||
%{SAGE_SHARE}/cremona
|
||||
%dir %{SAGE_SHARE}/cremona/
|
||||
%{SAGE_SHARE}/cremona/cremona_mini.db
|
||||
%{SAGE_SHARE}/ellcurves
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
%files data-elliptic_curves_large
|
||||
# GPLv2+
|
||||
%dir %{SAGE_SHARE}/cremona/
|
||||
%{SAGE_SHARE}/cremona/cremona.db
|
||||
%{SAGE_LOCAL}/var/lib/sage/installed/database_cremona_ellcurve-%{cremona_ver}
|
||||
|
||||
#------------------------------------------------------------------------
|
||||
%files data-etc
|
||||
# GPLv2+
|
||||
|
|
@ -1847,6 +1908,18 @@ rm -fr $DOT_SAGE
|
|||
|
||||
########################################################################
|
||||
%changelog
|
||||
* Thu Sep 12 2019 Jerry James <loganjerry@gmail.com> - 8.8-5
|
||||
- Improve the -ecm patch
|
||||
- Add -formatargspec patch to silence doc-building warnings
|
||||
- Add -data-elliptic_curves_large subpackage
|
||||
- Build with bliss, coxeter3, and mcqd support
|
||||
- Fix typo that made the singular.hlp file inaccessible
|
||||
- Add more gap packages to get closer to the set shipped by upstream
|
||||
- Refactor Requires so they apply to the correct subpackages
|
||||
- More python 3 patching due to changes in python 3.8
|
||||
- Use upstream's method of installing jupyter support
|
||||
- Obsolete the sagemath-notebook-export subpackage
|
||||
|
||||
* Tue Aug 20 2019 Susi Lehtola <jussilehtola@fedoraproject.org> - 8.8-4
|
||||
- Rebuilt for GSL 2.6.
|
||||
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue