mirror of
https://src.fedoraproject.org/rpms/sagemath.git
synced 2025-04-22 11:45:56 -04:00
Update to sagemath 5.9
This commit is contained in:
pcpa
parent
eac7c8fec1
commit
fbc0e8d055
33 changed files with 597 additions and 578 deletions
143
sagemath.spec
143
sagemath.spec
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@ -58,23 +58,23 @@
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%global polytopes_db_pkg polytopes_db-20100210.p2
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%global rubiks_pkg rubiks-20070912.p18
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%global sagenb_pkg sagenb-0.10.4
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%global sagetex_pkg sagetex-2.3.3.p2
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%global sagetex_pkg sagetex-2.3.4
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%global sagemath_share %{_datadir}/%{name}
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%global SAGE_ROOT %{_libdir}/sagemath
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%global SAGE_LOCAL %{SAGE_ROOT}/local
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%global SAGE_DEVEL %{SAGE_ROOT}/devel
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%global SAGE_SRC %{SAGE_ROOT}/src
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%global SAGE_DOC %{_docdir}/%{name}-%{version}
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%global SAGE_SHARE %{_datadir}/sagemath
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%global SAGE_EXTCODE %{SAGE_SHARE}/extcode
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%global SAGE_EXTCODE %{SAGE_SHARE}/ext
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%global SAGE_PYTHONPATH %{SAGE_ROOT}/site-packages
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Name: sagemath
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Group: Applications/Engineering
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Summary: A free open-source mathematics software system
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Version: 5.8
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Release: 9%{?dist}
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Version: 5.9
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Release: 1%{?dist}
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# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
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# Additionally, every $files section has a comment with the license name
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# before files with that license
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@ -108,13 +108,20 @@ Patch1: %{name}-gmp.patch
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# Set of patches to work with system wide packages
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Patch2: %{name}-scripts.patch
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# *** Apply patch3, not patch4, this patch for fedora <= 19
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# Do not mandate a patched ntl. It was requested to ntl upstream to
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# provide an api to match what sagemath expects.
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# http://shoup.net/pipermail/ntl_shoup.net/2012-April/000033.html
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Patch3: %{name}-unpatched_ntl.patch
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# *** Apply patch4, not patch3, this patch for fedora > 19
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# Adapt to ntl 6.0.0.
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Patch3: %{name}-ntl6.patch
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Patch4: %{name}-ntl6.patch
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# remove call to not implemented sagemath "is_package_installed" interfaces
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# need to package coin-or solver in fedora
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# remove check for non free solvers
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Patch4: %{name}-extensions.patch
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Patch5: %{name}-extensions.patch
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# helper to:
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# o respect a DESTDIR environment variable
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@ -122,10 +129,7 @@ Patch4: %{name}-extensions.patch
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# o minor change to help in incremental builds by avoiding rebuilding
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# files
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# o do not assume there is an installed sagemath
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Patch5: %{name}-rpmbuild.patch
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# avoid buildroot in some binaries due to not expanding symlinks
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Patch6: %{name}-buildroot.patch
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Patch6: %{name}-rpmbuild.patch
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# build documentation in buildroot environment
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Patch7: %{name}-sagedoc.patch
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@ -210,12 +214,8 @@ Patch31: %{name}-nopari2.6.patch
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# and does not work with cryptominisat 2.9.5 (in f18)
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Patch32: %{name}-cryptominisat.patch
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# Upgrade to Cython 0.19
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# http://trac.sagemath.org/sage_trac/ticket/14452
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Patch33: 14452_cython_0.19.patch
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# Adapt to m4rie 20130416
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Patch34: %{name}-m4rie.patch
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Patch33: %{name}-m4rie.patch
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BuildRequires: 4ti2
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BuildRequires: atlas-devel
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@ -632,8 +632,11 @@ popd
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%patch0 -p1
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%patch1 -p1
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%patch2 -p1
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%if 0%{?fedora} <= 19
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%patch3 -p1
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%else
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%patch4 -p1
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%endif
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%patch5 -p1
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%patch6 -p1
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%patch7 -p1
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@ -695,16 +698,7 @@ popd
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%if 0%{?fedora} >= 19
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%patch32 -p1
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%endif
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%if 0%{?fedora} >= 20
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pushd spkg/build/sage-%{version}
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%patch33 -p1
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popd
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%endif
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%if 0%{?fedora} >= 19
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%patch34 -p1
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%endif
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#------------------------------------------------------------------------
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@ -728,7 +722,7 @@ export CFLAGS="%{optflags}"
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export CXXFLAGS="%{optflags}"
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export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
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export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
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export SAGE_DEVEL=%{buildroot}%{SAGE_DEVEL}
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export SAGE_SRC=%{buildroot}%{SAGE_SRC}
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export SAGE_FORTRAN=%{_bindir}/gfortran
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export SAGE_FORTRAN_LIB=`gfortran --print-file-name=libgfortran.so`
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export DESTDIR=%{buildroot}
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@ -739,9 +733,9 @@ mkdir -p $DOT_SAGE/tmp
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# match system packages as sagemath packages
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export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
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export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
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export SAGE_DEVEL=%{buildroot}%{SAGE_DEVEL}
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mkdir -p $SAGE_ROOT $SAGE_LOCAL $SAGE_DEVEL/sage
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ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_DEVEL/sage/sage
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export SAGE_SRC=%{buildroot}%{SAGE_SRC}
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mkdir -p $SAGE_ROOT $SAGE_LOCAL $SAGE_SRC
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ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_SRC/sage
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ln -sf %{_libdir} $SAGE_LOCAL/lib
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ln -sf %{_includedir} $SAGE_LOCAL/include
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ln -sf %{_datadir} $SAGE_LOCAL/share
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@ -789,7 +783,7 @@ rm -fr $DOT_SAGE
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%install
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export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
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export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
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export SAGE_DEVEL=%{buildroot}%{SAGE_DEVEL}
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export SAGE_SRC=%{buildroot}%{SAGE_SRC}
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export SAGE_SHARE=%{buildroot}%{SAGE_SHARE}
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export SAGE_EXTCODE=%{buildroot}%{SAGE_EXTCODE}
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export SAGE_DOC=%{buildroot}%{SAGE_DOC}
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@ -806,9 +800,9 @@ export PYTHONPATH=%{buildroot}%{python_sitearch}:$PYTHONPATH
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mkdir -p %{buildroot}%{_bindir}
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mkdir -p %{buildroot}%{_libdir}
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mkdir -p $SAGE_PYTHONPATH
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rm -fr $SAGE_DEVEL/sage $SAGE_LOCAL/{include,lib,share,notebook}
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mkdir -p $SAGE_SHARE $SAGE_DOC $SAGE_LOCAL/bin $SAGE_DEVEL/sage
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ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_DEVEL/sage/sage
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rm -fr $SAGE_LOCAL/{include,lib,share,notebook}
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mkdir -p $SAGE_SHARE $SAGE_DOC $SAGE_LOCAL/bin $SAGE_SRC
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ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_SRC/sage
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ln -sf %{_libdir} $SAGE_LOCAL/lib
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ln -sf %{_includedir} $SAGE_LOCAL/include
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ln -sf %{_datadir} $SAGE_LOCAL/share
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@ -845,7 +839,7 @@ pushd spkg/build/%{sagenb_pkg}/src/sagenb
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%endif
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# flask stuff not installed
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cp -ar flask_version %{buildroot}%{python_sitearch}/sagenb
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ln -sf %{python_sitearch}/sagenb %{buildroot}%{SAGE_DEVEL}/sagenb
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ln -sf %{python_sitearch}/sagenb %{buildroot}%{SAGE_SRC}/sagenb
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popd
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#------------------------------------------------------------------------
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@ -859,7 +853,7 @@ popd
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cp -fa COPYING.txt $SAGE_ROOT
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pushd spkg/build/sage_scripts-%{version}
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mkdir -p $SAGE_LOCAL/bin
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cp -fa sage-* *doctest.py $SAGE_LOCAL/bin
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cp -fa sage-* $SAGE_LOCAL/bin
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pushd $SAGE_LOCAL/bin
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ln -sf %{_bindir}/python sage.bin
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ln -sf %{_bindir}/gp sage_pari
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@ -886,15 +880,42 @@ pushd spkg/build/%{rubiks_pkg}/src
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popd
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#------------------------------------------------------------------------
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rm -f %{buildroot}%{_bindir}/spkg-debian-maybe
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pushd $SAGE_LOCAL/bin/
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rm -f sage-{bdist,build,build-debian,clone,crap,debsource,download_package,env,libdist,location,make_devel_packages,omega,pkg,pkg-nocompress,pull,push,sdist,sbuildhack,upgrade}
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rm -f sage-list-* sage-mirror* SbuildHack.pm sage-test-*
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rm -f sage-{verify-pyc,hardcode_sage_root,check-64,spkg*,update*,starts}
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rm -f *~
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rm -f sage-{check-libraries.py,ldwrap,open,osx-open,README-osx.txt}
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rm -f sage-rebase_sage.sh
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rm -f sage-{combinat,massif}
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for file in \
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sage-apply-ticket \
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sage-bdist \
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sage-build \
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sage-clone \
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sage-combinat \
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sage-crap \
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sage-list-experimental \
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sage-list-optional \
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sage-list-packages \
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sage-list-standard \
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sage-location \
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sage-make_devel_packages \
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sage-omega \
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sage-pkg \
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sage-pull \
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sage-push \
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sage-pypkg-location \
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sage-README-osx.txt \
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sage-rebaseall.bat \
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sage-rebaseall.sh \
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sage-rebase.bat \
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sage-rebase.sh \
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sage-rsyncdist \
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sage-sdist \
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sage-spkg-install \
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sage-startuptime.py \
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sage-sync-build.py \
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sage-test-import \
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sage-update \
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sage-update-build \
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sage-upgrade \
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spkg-install; do
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rm -f $file
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done
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popd
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#------------------------------------------------------------------------
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@ -976,7 +997,7 @@ export SAGE_ROOT="$SAGE_ROOT"
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export SAGE_LOCAL="$SAGE_LOCAL"
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export SAGE_SHARE="$SAGE_SHARE"
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export SAGE_EXTCODE="$SAGE_EXTCODE"
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export SAGE_DEVEL="$SAGE_DEVEL"
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export SAGE_SRC="$SAGE_SRC"
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##export SAGE_DOC="$SAGE_DOC"
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module load 4ti2-%{_arch}
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%if %{have_lrcalc}
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@ -1004,7 +1025,7 @@ chmod +x %{buildroot}%{_bindir}/sage
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cat > %{buildroot}%{SAGE_LOCAL}/bin/sage3d << EOF
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#!/bin/sh
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java -classpath %{SAGE_DEVEL}/sage/sagenb/data/sage3d/lib/sage3d.jar:%{_javadir}/j3dcore.jar:%{_javadir}/vecmath.jar:%{_javadir}/j3dutils.jar org.sagemath.sage3d.ObjectViewerApp "\$1"
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java -classpath %{SAGE_SRC}/sage/sagenb/data/sage3d/lib/sage3d.jar:%{_javadir}/j3dcore.jar:%{_javadir}/vecmath.jar:%{_javadir}/j3dutils.jar org.sagemath.sage3d.ObjectViewerApp "\$1"
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EOF
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chmod +x %{buildroot}%{SAGE_LOCAL}/bin/sage3d
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%endif
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@ -1051,7 +1072,7 @@ pushd spkg/build/sage-%{version}/doc
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%endif
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# there we go
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ln -sf %{buildroot}%{SAGE_DOC} $SAGE_ROOT/devel/doc
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ln -sf %{buildroot}%{SAGE_DOC} $SAGE_SRC/doc
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python common/builder.py all html
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export SAGE_DOC=%{buildroot}%{SAGE_DOC}
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cp -far output $SAGE_DOC
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@ -1089,13 +1110,14 @@ perl -pi -e 's|%{buildroot}||g;' \
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#------------------------------------------------------------------------
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# Fix links
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rm -fr $SAGE_DEVEL/sage $SAGE_EXTCODE/sage $SAGE_ROOT/doc $SAGE_ROOT/devel/doc
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ln -sf %{python_sitearch} $SAGE_DEVEL/sage
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rm -fr $SAGE_EXTCODE/sage $SAGE_ROOT/doc $SAGE_ROOT/src/doc
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ln -sf %{python_sitearch} $SAGE_SRC/sage
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ln -sf %{python_sitearch} $SAGE_EXTCODE/sage
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ln -sf %{SAGE_DOC} $SAGE_ROOT/doc
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ln -sf %{SAGE_DOC} $SAGE_ROOT/devel/doc
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ln -sf %{SAGE_DOC} $SAGE_SRC/doc
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ln -sf %{SAGE_SHARE} $SAGE_ROOT/share
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rm -fr %{buildroot}%{python_sitearch}/site-packages
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# compat devel symlink
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ln -sf src $SAGE_ROOT/devel
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# Install menu and icons
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pushd spkg/build/extcode-%{version}
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@ -1182,7 +1204,9 @@ exit 0
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exit 0
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%postun sagetex
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%{_bindir}/mktexlsr
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if [ $1 -eq 0 ] ; then
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%{_bindir}/mktexlsr
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fi
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exit 0
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########################################################################
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@ -1192,7 +1216,6 @@ exit 0
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%doc %{SAGE_ROOT}/COPYING.txt
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%dir %{SAGE_LOCAL}
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%dir %{SAGE_LOCAL}/bin
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%{SAGE_LOCAL}/bin/ncadoctest.py
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%{SAGE_LOCAL}/bin/QuadraticSieve
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%{SAGE_LOCAL}/bin/ecm
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%{SAGE_LOCAL}/bin/gap_stamp
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@ -1202,10 +1225,11 @@ exit 0
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%{SAGE_LOCAL}/lib
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%{SAGE_LOCAL}/share
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%{SAGE_ROOT}/doc
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%{SAGE_ROOT}/devel
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%{SAGE_ROOT}/share
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%dir %{SAGE_DEVEL}
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%{SAGE_DEVEL}/doc
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%{SAGE_DEVEL}/sage
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%dir %{SAGE_SRC}
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%{SAGE_SRC}/doc
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%{SAGE_SRC}/sage
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%dir %{SAGE_PYTHONPATH}
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%if %{with_sage_pexpect}
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# MIT
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@ -1314,7 +1338,7 @@ exit 0
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#------------------------------------------------------------------------
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%files notebook
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# GPLv2+
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%{SAGE_DEVEL}/sagenb
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%{SAGE_SRC}/sagenb
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%dir %{python_sitearch}/sagenb
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%{python_sitearch}/sagenb/*.py*
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%{python_sitearch}/sagenb-*.egg-info
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@ -1393,6 +1417,13 @@ exit 0
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########################################################################
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%changelog
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* Mon May 6 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.9-1
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- Update to sagemath 5.9.
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- Match upstream rename of SAGE_DEVEL to SAGE_SRC.
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- Merged -buildroot in -rpmbuild patch.
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- Drop cython 0.19 patch already applied to sagemath 5.9.
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- Add macro conditionals to use same spec and patches in f18, f19 and f20.
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* Mon May 6 2013 Jerry James <loganjerry@gmail.com> - 5.8-9
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- Rebuild for libfplll 4.0.3, m4ri and m4rie 20130416, and ntl 6.0.0
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- Drop sagemath-unpatched_ntl.patch now that Fedora's NTL is patched
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