diff -up src/sage/env.py.orig src/sage/env.py --- src/sage/env.py.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/env.py 2023-03-13 09:26:16.468693261 -0600 @@ -523,7 +523,8 @@ def cython_aliases(required_modules=None aliases[var + "INCDIR"] = pc['include_dirs'] aliases[var + "LIBDIR"] = pc['library_dirs'] aliases[var + "LIBEXTRA"] = list(filter(lambda s: not s.startswith(('-l','-L')), libs.split())) - aliases[var + "LIBRARIES"] = pc['libraries'] + aliases[var + "LIBRARIES"] = pc['libraries'] + ['gomp'] + aliases['Singular_INCDIR'] = ['/usr/include/singular', '/usr/include/factory'] # uname-specific flags UNAME = os.uname() diff -up src/sage/graphs/mcqd.pyx.orig src/sage/graphs/mcqd.pyx --- src/sage/graphs/mcqd.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/graphs/mcqd.pyx 2023-03-13 09:26:16.468693261 -0600 @@ -1,4 +1,5 @@ # distutils: language = c++ +# distutils: libraries = mcqd # sage_setup: distribution = sagemath-mcqd from cysignals.signals cimport sig_on, sig_off diff -up src/sage/libs/arb/arb.pxd.orig src/sage/libs/arb/arb.pxd --- src/sage/libs/arb/arb.pxd.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/libs/arb/arb.pxd 2023-03-13 09:26:16.468693261 -0600 @@ -1,4 +1,5 @@ # distutils: libraries = gmp flint ARB_LIBRARY +# distutils: include_dirs = /usr/include/arb /usr/include/flint # distutils: depends = arb.h from sage.libs.arb.types cimport * diff -up src/sage/libs/arb/arb_version.pyx.orig src/sage/libs/arb/arb_version.pyx --- src/sage/libs/arb/arb_version.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/libs/arb/arb_version.pyx 2023-03-13 09:26:16.468693261 -0600 @@ -1,4 +1,5 @@ # -*- coding: utf-8 +# distutils: include_dirs = /usr/include/arb /usr/include/flint from sage.libs.arb.arb cimport arb_version from sage.cpython.string cimport char_to_str diff -up src/sage/libs/arb/arith.pyx.orig src/sage/libs/arb/arith.pyx --- src/sage/libs/arb/arith.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/libs/arb/arith.pyx 2023-03-13 09:26:16.468693261 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/arb /usr/include/flint """ Arithmetic functions using the arb library """ diff -up src/sage/libs/mpmath/ext_impl.pyx.orig src/sage/libs/mpmath/ext_impl.pyx --- src/sage/libs/mpmath/ext_impl.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/libs/mpmath/ext_impl.pyx 2023-03-13 09:26:16.469693242 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/flint """ This module provides the core implementation of multiprecision floating-point arithmetic. Operations are done in-place. diff -up src/sage/libs/mpmath/ext_libmp.pyx.orig src/sage/libs/mpmath/ext_libmp.pyx --- src/sage/libs/mpmath/ext_libmp.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/libs/mpmath/ext_libmp.pyx 2023-03-13 09:26:16.469693242 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/flint """ Faster versions of some key functions in mpmath.libmp """ diff -up src/sage/libs/mpmath/ext_main.pyx.orig src/sage/libs/mpmath/ext_main.pyx --- src/sage/libs/mpmath/ext_main.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/libs/mpmath/ext_main.pyx 2023-03-13 09:26:16.469693242 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/flint """ mpmath floating-point numbers diff -up src/sage/libs/mpmath/utils.pyx.orig src/sage/libs/mpmath/utils.pyx --- src/sage/libs/mpmath/utils.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/libs/mpmath/utils.pyx 2023-03-13 09:26:16.470693224 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/flint """ Utilities for Sage-mpmath interaction diff -up src/sage/matrix/matrix_complex_ball_dense.pyx.orig src/sage/matrix/matrix_complex_ball_dense.pyx --- src/sage/matrix/matrix_complex_ball_dense.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/matrix/matrix_complex_ball_dense.pyx 2023-03-13 09:26:16.470693224 -0600 @@ -1,4 +1,5 @@ # distutils: libraries = ARB_LIBRARY +# distutils: include_dirs = /usr/include/arb /usr/include/flint r""" Arbitrary precision complex ball matrices using Arb diff -up src/sage/matrix/matrix_cyclo_dense.pyx.orig src/sage/matrix/matrix_cyclo_dense.pyx --- src/sage/matrix/matrix_cyclo_dense.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/matrix/matrix_cyclo_dense.pyx 2023-03-13 09:26:16.470693224 -0600 @@ -1,7 +1,7 @@ # distutils: language = c++ # distutils: libraries = NTL_LIBRARIES # distutils: extra_compile_args = NTL_CFLAGS -# distutils: include_dirs = NTL_INCDIR +# distutils: include_dirs = NTL_INCDIR /usr/include/arb /usr/include/flint # distutils: library_dirs = NTL_LIBDIR # distutils: extra_link_args = NTL_LIBEXTRA """ diff -up src/sage/matrix/matrix_mpolynomial_dense.pyx.orig src/sage/matrix/matrix_mpolynomial_dense.pyx --- src/sage/matrix/matrix_mpolynomial_dense.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/matrix/matrix_mpolynomial_dense.pyx 2023-03-13 09:26:16.471693206 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/singular /usr/include/factory """ Dense matrices over multivariate polynomials over fields diff -up src/sage/rings/complex_arb.pyx.orig src/sage/rings/complex_arb.pyx --- src/sage/rings/complex_arb.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/rings/complex_arb.pyx 2023-03-13 09:26:16.471693206 -0600 @@ -1,4 +1,5 @@ # -*- coding: utf-8 +# distutils: include_dirs = /usr/include/arb /usr/include/flint r""" Arbitrary precision complex balls using Arb diff -up src/sage/rings/number_field/number_field_element_quadratic.pyx.orig src/sage/rings/number_field/number_field_element_quadratic.pyx --- src/sage/rings/number_field/number_field_element_quadratic.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/rings/number_field/number_field_element_quadratic.pyx 2023-03-13 10:54:33.688631507 -0600 @@ -1,6 +1,6 @@ # distutils: libraries = NTL_LIBRARIES # distutils: extra_compile_args = NTL_CFLAGS -# distutils: include_dirs = NTL_INCDIR +# distutils: include_dirs = NTL_INCDIR /usr/include/arb /usr/include/flint # distutils: library_dirs = NTL_LIBDIR # distutils: extra_link_args = NTL_LIBEXTRA # distutils: language = c++ diff -up src/sage/rings/polynomial/multi_polynomial_libsingular.pyx.orig src/sage/rings/polynomial/multi_polynomial_libsingular.pyx --- src/sage/rings/polynomial/multi_polynomial_libsingular.pyx.orig 2023-03-13 08:43:44.190347338 -0600 +++ src/sage/rings/polynomial/multi_polynomial_libsingular.pyx 2023-03-13 09:26:16.473693169 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/singular /usr/include/factory r""" Multivariate Polynomials via libSINGULAR diff -up src/sage/rings/polynomial/multi_polynomial.pyx.orig src/sage/rings/polynomial/multi_polynomial.pyx --- src/sage/rings/polynomial/multi_polynomial.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/rings/polynomial/multi_polynomial.pyx 2023-03-13 09:26:16.473693169 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/singular /usr/include/factory r""" Base class for elements of multivariate polynomial rings """ diff -up src/sage/rings/polynomial/plural.pyx.orig src/sage/rings/polynomial/plural.pyx --- src/sage/rings/polynomial/plural.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/rings/polynomial/plural.pyx 2023-03-13 09:26:16.474693151 -0600 @@ -1,3 +1,4 @@ +# distutils: include_dirs = /usr/include/singular /usr/include/factory r""" Noncommutative polynomials via libSINGULAR/Plural diff -up src/sage/rings/polynomial/polynomial_complex_arb.pyx.orig src/sage/rings/polynomial/polynomial_complex_arb.pyx --- src/sage/rings/polynomial/polynomial_complex_arb.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/rings/polynomial/polynomial_complex_arb.pyx 2023-03-13 09:26:16.474693151 -0600 @@ -1,4 +1,5 @@ # -*- coding: utf-8 +# distutils: include_dirs = /usr/include/arb /usr/include/flint r""" Univariate polynomials over `\CC` with interval coefficients using Arb. diff -up src/sage/rings/real_arb.pyx.orig src/sage/rings/real_arb.pyx --- src/sage/rings/real_arb.pyx.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage/rings/real_arb.pyx 2023-03-13 09:26:16.474693151 -0600 @@ -1,4 +1,5 @@ # -*- coding: utf-8 +# distutils: include_dirs = /usr/include/arb /usr/include/flint r""" Arbitrary precision real balls using Arb diff -up src/sage_setup/command/sage_build_cython.py.orig src/sage_setup/command/sage_build_cython.py --- src/sage_setup/command/sage_build_cython.py.orig 2023-02-11 06:25:15.000000000 -0700 +++ src/sage_setup/command/sage_build_cython.py 2023-03-13 09:26:16.475693132 -0600 @@ -205,6 +205,7 @@ class sage_build_cython(Command): self.library_order = library_order # Search for dependencies in the source tree and add to the list of include directories self.sage_include_dirs = sage_include_directories(use_sources=True) + self.sage_include_dirs.extend(['@@CYSIGNALS@@']) from Cython.Build import cythonize import Cython.Compiler.Options