sagemath/sagemath-extensions.patch
Jerry James 2fac775552 Version 9.0 (bz 1756780, 1770880).
Also:
- Drop upstreamed -ecm and -primecount patches.
- Add -escape patch.
- The old notebook (sagenb) is no longer shipped, so drop the -sagenb
  and -sagenb-python3 patches, the -notebook subpackage, and some BRs.
- New -jupyter subpackage.
- Add suitesparse BR.
- Drop pathlib2 BR (bz 1797116).
2020-02-28 09:38:49 -07:00

195 lines
7.9 KiB
Diff

diff -up src/module_list.py.orig src/module_list.py
--- src/module_list.py.orig 2020-01-01 04:03:10.000000000 -0700
+++ src/module_list.py 2020-02-25 13:38:22.980350735 -0700
@@ -389,16 +389,16 @@ ext_modules = [
Extension('sage.graphs.matchpoly',
sources = ['sage/graphs/matchpoly.pyx']),
- OptionalExtension("sage.graphs.mcqd",
+ Extension("sage.graphs.mcqd",
["sage/graphs/mcqd.pyx"],
language = "c++",
- package = 'mcqd'),
+ libraries = ['mcqd']),
- OptionalExtension("sage.graphs.bliss",
+ Extension("sage.graphs.bliss",
["sage/graphs/bliss.pyx"],
language = "c++",
- libraries = ['bliss'],
- package = 'bliss'),
+ include_dirs = ['/usr/include/bliss'],
+ libraries = ['bliss']),
Extension('sage.graphs.planarity',
sources = ['sage/graphs/planarity.pyx'],
@@ -417,10 +417,9 @@ ext_modules = [
Extension('sage.graphs.graph_decompositions.cutwidth',
sources = ['sage/graphs/graph_decompositions/cutwidth.pyx']),
- OptionalExtension('sage.graphs.graph_decompositions.tdlib',
+ Extension('sage.graphs.graph_decompositions.tdlib',
sources = ['sage/graphs/graph_decompositions/tdlib.pyx'],
- language="c++",
- package = 'tdlib'),
+ language="c++"),
Extension('sage.graphs.spanning_tree',
sources = ['sage/graphs/spanning_tree.pyx']),
@@ -479,9 +478,9 @@ ext_modules = [
##
################################
- OptionalExtension("sage.interfaces.primecount",
+ Extension("sage.interfaces.primecount",
["sage/interfaces/primecount.pyx"],
- package = "primecount"),
+ libraries = ["primecount"]),
Extension('*', ['sage/interfaces/*.pyx']),
@@ -500,21 +499,19 @@ ext_modules = [
##
################################
- OptionalExtension('sage.libs.coxeter3.coxeter',
+ Extension('sage.libs.coxeter3.coxeter',
sources = ['sage/libs/coxeter3/coxeter.pyx'],
- include_dirs = [os.path.join(SAGE_INC, 'coxeter')],
+ include_dirs = ['/usr/include/coxeter'],
language="c++",
- libraries = ['coxeter3'],
- package = 'coxeter3'),
+ libraries = ['coxeter3']),
Extension('sage.libs.ecl',
sources = ["sage/libs/ecl.pyx"]),
- OptionalExtension("sage.libs.fes",
+ Extension("sage.libs.fes",
["sage/libs/fes.pyx"],
language = "c",
- libraries = ['fes'],
- package = 'fes'),
+ libraries = ['fes']),
Extension('sage.libs.flint.flint',
sources = ["sage/libs/flint/flint.pyx"],
@@ -543,13 +540,14 @@ ext_modules = [
sources = ["sage/libs/homfly.pyx"],
libraries = ["homfly", "gc"]),
- OptionalExtension('sage.libs.sirocco',
+ Extension('sage.libs.sirocco',
sources = ["sage/libs/sirocco.pyx"],
libraries = ["sirocco"],
- package="sirocco",
language = 'c++'),
- Extension('*', ['sage/libs/linbox/*.pyx']),
+ Extension('*',
+ sources = ['sage/libs/linbox/*.pyx'],
+ libraries = ["gomp"]),
Extension('sage.libs.lcalc.lcalc_Lfunction',
sources = ['sage/libs/lcalc/lcalc_Lfunction.pyx'],
@@ -566,10 +564,9 @@ ext_modules = [
Extension('sage.libs.lrcalc.lrcalc',
sources = ["sage/libs/lrcalc/lrcalc.pyx"]),
- OptionalExtension("sage.libs.meataxe",
+ Extension("sage.libs.meataxe",
sources = ['sage/libs/meataxe.pyx'],
- libraries = ['mtx'],
- package = 'meataxe'),
+ libraries = ['mtx']),
Extension('*', ['sage/libs/pari/*.pyx']),
@@ -815,7 +812,8 @@ ext_modules = [
include_dirs = cblas_include_dirs),
Extension('sage.matrix.matrix_integer_sparse',
- sources = ['sage/matrix/matrix_integer_sparse.pyx']),
+ sources = ['sage/matrix/matrix_integer_sparse.pyx'],
+ libraries = ['gomp']),
Extension('sage.matrix.matrix_mod2_dense',
sources = ['sage/matrix/matrix_mod2_dense.pyx'],
@@ -834,20 +832,21 @@ ext_modules = [
Extension('sage.matrix.matrix_modn_dense_float',
sources = ['sage/matrix/matrix_modn_dense_float.pyx'],
language="c++",
- libraries = cblas_libs,
+ libraries = cblas_libs + ['gomp'],
library_dirs = cblas_library_dirs,
include_dirs = cblas_include_dirs),
Extension('sage.matrix.matrix_modn_dense_double',
sources = ['sage/matrix/matrix_modn_dense_double.pyx'],
language="c++",
- libraries = cblas_libs,
+ libraries = cblas_libs + ['gomp'],
library_dirs = cblas_library_dirs,
include_dirs = cblas_include_dirs,
extra_compile_args = ["-D_XPG6"]),
Extension('sage.matrix.matrix_modn_sparse',
- sources = ['sage/matrix/matrix_modn_sparse.pyx']),
+ sources = ['sage/matrix/matrix_modn_sparse.pyx'],
+ libraries = ['gomp']),
Extension('sage.matrix.matrix_mpolynomial_dense',
sources = ['sage/matrix/matrix_mpolynomial_dense.pyx']),
@@ -877,10 +876,9 @@ ext_modules = [
Extension('sage.matrix.matrix_window',
sources = ['sage/matrix/matrix_window.pyx']),
- OptionalExtension("sage.matrix.matrix_gfpn_dense",
+ Extension("sage.matrix.matrix_gfpn_dense",
sources = ['sage/matrix/matrix_gfpn_dense.pyx'],
- libraries = ['mtx'],
- package = 'meataxe'),
+ libraries = ['mtx']),
Extension('sage.matrix.misc',
sources = ['sage/matrix/misc.pyx']),
@@ -1056,26 +1054,25 @@ ext_modules = [
Extension("sage.numerical.backends.interactivelp_backend",
["sage/numerical/backends/interactivelp_backend.pyx"]),
- OptionalExtension("sage.numerical.backends.gurobi_backend",
- ["sage/numerical/backends/gurobi_backend.pyx"],
- libraries = ["gurobi"],
- condition = os.path.isfile(SAGE_INC + "/gurobi_c.h") and
- os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")),
+# OptionalExtension("sage.numerical.backends.gurobi_backend",
+# ["sage/numerical/backends/gurobi_backend.pyx"],
+# libraries = ["gurobi"],
+# condition = os.path.isfile(SAGE_INC + "/gurobi_c.h") and
+# os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")),
- OptionalExtension("sage.numerical.backends.cplex_backend",
- ["sage/numerical/backends/cplex_backend.pyx"],
- libraries = ["cplex"],
- condition = os.path.isfile(SAGE_INC + "/cplex.h") and
- os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")),
+# OptionalExtension("sage.numerical.backends.cplex_backend",
+# ["sage/numerical/backends/cplex_backend.pyx"],
+# libraries = ["cplex"],
+# condition = os.path.isfile(SAGE_INC + "/cplex.h") and
+# os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")),
- OptionalExtension("sage.numerical.backends.coin_backend",
+ Extension("sage.numerical.backends.coin_backend",
["sage/numerical/backends/coin_backend.pyx"],
language = 'c++',
libraries = ["Cbc", "CbcSolver", "Cgl", "Clp", "CoinUtils",
"OsiCbc", "OsiClp", "Osi"] + lapack_libs,
library_dirs = lapack_library_dirs,
- include_dirs = lapack_include_dirs,
- package = 'cbc'),
+ include_dirs = lapack_include_dirs),
################################
##