sagemath/sagemath-sagedoc.patch

diff -up src/doc/common/conf.py.orig src/doc/common/conf.py
--- src/doc/common/conf.py.orig	2016-08-08 13:21:49.624502727 -0400
+++ src/doc/common/conf.py	2016-08-08 13:22:19.945503888 -0400
@@ -218,7 +218,7 @@ if (os.environ.get('SAGE_DOC_MATHJAX', '
     html_theme_options['mathjax_macros'] = sage_mathjax_macros()
 
     from pkg_resources import Requirement, working_set
-    sagenb_path = working_set.find(Requirement.parse('sagenb')).location
+    sagenb_path = SAGE_SRC
     mathjax_relative = os.path.join('sagenb','data','mathjax')
 
     # It would be really nice if sphinx would copy the entire mathjax directory,
diff -up src/sage/doctest/control.py.orig src/sage/doctest/control.py
--- src/sage/doctest/control.py.orig	2016-08-08 13:22:48.247504971 -0400
+++ src/sage/doctest/control.py	2016-08-08 13:23:38.842506909 -0400
@@ -95,7 +95,6 @@ class DocTestDefaults(SageObject):
         self.valgrind = False
         self.massif = False
         self.cachegrind = False
-        self.omega = False
         self.failed = False
         self.new = False
         self.show_skipped = False
@@ -270,7 +269,7 @@ class DocTestController(SageObject):
             if options.gdb or options.debug:
                 # Interactive debuggers: "infinite" timeout
                 options.timeout = 0
-            elif options.valgrind or options.massif or options.cachegrind or options.omega:
+            elif options.valgrind or options.massif or options.cachegrind:
                 # Non-interactive debuggers: 48 hours
                 options.timeout = int(os.getenv('SAGE_TIMEOUT_VALGRIND', 48 * 60 * 60))
             elif options.long:
@@ -636,7 +635,6 @@ class DocTestController(SageObject):
         from sage.env import SAGE_SRC, SAGE_DOC_SRC, SAGE_ROOT
         def all_files():
             self.files.append(opj(SAGE_SRC, 'sage'))
-            self.files.append(opj(SAGE_SRC, 'sage_setup'))
             self.files.append(SAGE_DOC_SRC)
             self.options.sagenb = True
         DOT_GIT= opj(SAGE_ROOT, '.git')
@@ -1031,13 +1029,8 @@ class DocTestController(SageObject):
             elif opt.cachegrind:
                 toolname = "cachegrind"
                 flags = os.getenv("SAGE_CACHEGRIND_FLAGS", "")
-            elif opt.omega:
-                toolname = "exp-omega"
-                flags = os.getenv("SAGE_OMEGA_FLAGS", "")
             cmd = "exec valgrind --tool=%s "%(toolname)
             flags += ''' --log-file="%s" ''' % logfile
-            if opt.omega:
-                toolname = "omega"
             if "%s" in flags:
                 flags %= toolname + ".%p" # replace %s with toolname
         cmd += flags + sage_cmd
@@ -1097,10 +1090,10 @@ class DocTestController(SageObject):
             0
         """
         opt = self.options
-        L = (opt.gdb, opt.valgrind, opt.massif, opt.cachegrind, opt.omega)
+        L = (opt.gdb, opt.valgrind, opt.massif, opt.cachegrind)
         if any(L):
             if L.count(True) > 1:
-                self.log("You may only specify one of gdb, valgrind/memcheck, massif, cachegrind, omega")
+                self.log("You may only specify one of gdb, valgrind/memcheck, massif, cachegrind")
                 return 2
             return self.run_val_gdb()
         else:
diff -up src/sage/interfaces/singular.py.orig src/sage/interfaces/singular.py
--- src/sage/interfaces/singular.py.orig	2016-08-08 13:23:50.344507349 -0400
+++ src/sage/interfaces/singular.py	2016-08-08 13:24:08.618508049 -0400
@@ -2249,7 +2249,7 @@ def generate_docstring_dictionary():
     nodes.clear()
     node_names.clear()
 
-    singular_docdir = os.environ["SAGE_LOCAL"]+"/share/singular/"
+    singular_docdir = os.environ["SINGULAR_BIN_DIR"]+"/info/"
 
     new_node = re.compile("File: singular\.hlp,  Node: ([^,]*),.*")
     new_lookup = re.compile("\* ([^:]*):*([^.]*)\..*")
diff -up src/sage_setup/docbuild/ext/multidocs.py.orig src/sage_setup/docbuild/ext/multidocs.py
--- src/sage_setup/docbuild/ext/multidocs.py.orig	2016-08-10 14:37:02.566492810 -0400
+++ src/sage_setup/docbuild/ext/multidocs.py	2016-08-10 14:37:31.238493908 -0400
@@ -78,8 +78,11 @@ def merge_environment(app, env):
             for ind in newalldoc:
                 # treat subdocument source as orphaned file and don't complain
                 md = env.metadata.get(ind, dict())
-                md['orphan'] = 1
-                env.metadata[ind] = md
+                try:
+                    md['orphan'] = 1
+                    env.metadata[ind] = md
+                except AttributeError:
+                    env.metadata[ind] = {'orphan'}
             # merge the citations
             newcite = {}
             for ind, (path, tag) in docenv.citations.iteritems():
diff -up src/sage_setup/docbuild/__init__.py.orig src/sage_setup/docbuild/__init__.py
--- src/sage_setup/docbuild/__init__.py.orig	2016-08-10 14:33:38.854485009 -0400
+++ src/sage_setup/docbuild/__init__.py	2016-08-10 14:34:22.591486684 -0400
@@ -295,12 +295,12 @@ class AllBuilder(object):
         # apply_async does not, so don't use it.
         x = pool.map_async(build_other_doc, L, 1)
         try:
-            x.get(99999)
+            x.get(3600)
             pool.close()
             pool.join()
         except Exception:
-            pool.terminate()
             if ABORT_ON_ERROR:
+                pool.terminate()
                 raise
         logger.warning("Elapsed time: %.1f seconds."%(time.time()-start))
         logger.warning("Done building the documentation!")
@@ -492,12 +492,12 @@ class ReferenceBuilder(AllBuilder):
             # (See comment in AllBuilder._wrapper about using map instead of apply.)
             x = pool.map_async(build_ref_doc, L, 1)
             try:
-                x.get(99999)
+                x.get(3600)
                 pool.close()
                 pool.join()
             except Exception:
-                pool.terminate()
                 if ABORT_ON_ERROR:
+                    pool.terminate()
                     raise
             # The html refman must be build at the end to ensure correct
             # merging of indexes and inventories.