sagemath/sagemath-extensions.patch
Jerry James eaa777c690 Update to sagemath 8.4.
Also:
- Build for python 3 instead of python 2 due to upcoming python 2 removal.
- Add -python3 and -escape patches to fix problems with python 3.
- Drop -nofstring patch, only needed for python 2.
- Drop upstreamed -eclib patch.
- Switch from atlas to openblas and rename -atlas patch to -openblas.
- Add -buildroot patch and only build cython interfaces once.
2018-11-01 19:25:26 -06:00

128 lines
5.4 KiB
Diff

diff -up src/module_list.py.orig src/module_list.py
--- src/module_list.py.orig 2018-10-17 17:13:35.000000000 -0600
+++ src/module_list.py 2018-10-25 11:33:55.361930982 -0600
@@ -358,16 +358,16 @@ ext_modules = [
Extension('sage.graphs.matchpoly',
sources = ['sage/graphs/matchpoly.pyx']),
- OptionalExtension("sage.graphs.mcqd",
- ["sage/graphs/mcqd.pyx"],
- language = "c++",
- package = 'mcqd'),
+# OptionalExtension("sage.graphs.mcqd",
+# ["sage/graphs/mcqd.pyx"],
+# language = "c++",
+# package = 'mcqd'),
- OptionalExtension("sage.graphs.bliss",
- ["sage/graphs/bliss.pyx"],
- language = "c++",
- libraries = ['bliss'],
- package = 'bliss'),
+# OptionalExtension("sage.graphs.bliss",
+# ["sage/graphs/bliss.pyx"],
+# language = "c++",
+# libraries = ['bliss'],
+# package = 'bliss'),
Extension('sage.graphs.planarity',
sources = ['sage/graphs/planarity.pyx'],
@@ -386,10 +386,10 @@ ext_modules = [
Extension('sage.graphs.graph_decompositions.cutwidth',
sources = ['sage/graphs/graph_decompositions/cutwidth.pyx']),
- OptionalExtension('sage.graphs.graph_decompositions.tdlib',
- sources = ['sage/graphs/graph_decompositions/tdlib.pyx'],
- language="c++",
- package = 'tdlib'),
+# OptionalExtension('sage.graphs.graph_decompositions.tdlib',
+# sources = ['sage/graphs/graph_decompositions/tdlib.pyx'],
+# language="c++",
+# package = 'tdlib'),
Extension('sage.graphs.spanning_tree',
sources = ['sage/graphs/spanning_tree.pyx']),
@@ -461,21 +461,20 @@ ext_modules = [
##
################################
- OptionalExtension('sage.libs.coxeter3.coxeter',
- sources = ['sage/libs/coxeter3/coxeter.pyx'],
- include_dirs = [os.path.join(SAGE_INC, 'coxeter')],
- language="c++",
- libraries = ['coxeter3'],
- package = 'coxeter3'),
+# OptionalExtension('sage.libs.coxeter3.coxeter',
+# sources = ['sage/libs/coxeter3/coxeter.pyx'],
+# include_dirs = [os.path.join(SAGE_INC, 'coxeter')],
+# language="c++",
+# libraries = ['coxeter3'],
+# package = 'coxeter3'),
Extension('sage.libs.ecl',
sources = ["sage/libs/ecl.pyx"]),
- OptionalExtension("sage.libs.fes",
+ Extension("sage.libs.fes",
["sage/libs/fes.pyx"],
language = "c",
- libraries = ['fes'],
- package = 'fes'),
+ libraries = ['fes']),
Extension('sage.libs.flint.flint',
sources = ["sage/libs/flint/flint.pyx"],
@@ -841,10 +840,10 @@ ext_modules = [
Extension('sage.matrix.matrix_window',
sources = ['sage/matrix/matrix_window.pyx']),
- OptionalExtension("sage.matrix.matrix_gfpn_dense",
- sources = ['sage/matrix/matrix_gfpn_dense.pyx'],
- libraries = ['mtx'],
- package = 'meataxe'),
+# OptionalExtension("sage.matrix.matrix_gfpn_dense",
+# sources = ['sage/matrix/matrix_gfpn_dense.pyx'],
+# libraries = ['mtx'],
+# package = 'meataxe'),
Extension('sage.matrix.misc',
sources = ['sage/matrix/misc.pyx']),
@@ -1021,26 +1020,25 @@ ext_modules = [
Extension("sage.numerical.backends.interactivelp_backend",
["sage/numerical/backends/interactivelp_backend.pyx"]),
- OptionalExtension("sage.numerical.backends.gurobi_backend",
- ["sage/numerical/backends/gurobi_backend.pyx"],
- libraries = ["gurobi"],
- condition = os.path.isfile(SAGE_INC + "/gurobi_c.h") and
- os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")),
+# OptionalExtension("sage.numerical.backends.gurobi_backend",
+# ["sage/numerical/backends/gurobi_backend.pyx"],
+# libraries = ["gurobi"],
+# condition = os.path.isfile(SAGE_INC + "/gurobi_c.h") and
+# os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")),
- OptionalExtension("sage.numerical.backends.cplex_backend",
- ["sage/numerical/backends/cplex_backend.pyx"],
- libraries = ["cplex"],
- condition = os.path.isfile(SAGE_INC + "/cplex.h") and
- os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")),
+# OptionalExtension("sage.numerical.backends.cplex_backend",
+# ["sage/numerical/backends/cplex_backend.pyx"],
+# libraries = ["cplex"],
+# condition = os.path.isfile(SAGE_INC + "/cplex.h") and
+# os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")),
- OptionalExtension("sage.numerical.backends.coin_backend",
+ Extension("sage.numerical.backends.coin_backend",
["sage/numerical/backends/coin_backend.pyx"],
language = 'c++',
libraries = ["Cbc", "CbcSolver", "Cgl", "Clp", "CoinUtils",
"OsiCbc", "OsiClp", "Osi"] + lapack_libs,
library_dirs = lapack_library_dirs,
- include_dirs = lapack_include_dirs,
- package = 'cbc'),
+ include_dirs = lapack_include_dirs),
################################
##