sagemath/sagemath-jmol.patch
Jerry James eaa777c690 Update to sagemath 8.4.
Also:
- Build for python 3 instead of python 2 due to upcoming python 2 removal.
- Add -python3 and -escape patches to fix problems with python 3.
- Drop -nofstring patch, only needed for python 2.
- Drop upstreamed -eclib patch.
- Switch from atlas to openblas and rename -atlas patch to -openblas.
- Add -buildroot patch and only build cython interfaces once.
2018-11-01 19:25:26 -06:00

25 lines
1.3 KiB
Diff

diff -up src/sage/interfaces/jmoldata.py.orig src/sage/interfaces/jmoldata.py
--- src/sage/interfaces/jmoldata.py.orig 2018-10-17 17:13:47.000000000 -0600
+++ src/sage/interfaces/jmoldata.py 2018-10-25 13:22:07.965272901 -0600
@@ -148,8 +148,6 @@ class JmolData(SageObject):
sage: print(os.path.exists(testfile)) # optional -- java
True
"""
- # Set up paths, file names and scripts
- jmolpath = os.path.join(JMOL_DIR, "JmolData.jar")
target_native = targetfile
if sys.platform == 'cygwin':
@@ -173,10 +171,8 @@ class JmolData(SageObject):
env = dict(os.environ)
env['LC_ALL'] = 'C'
env['LANG'] = 'C'
- subprocess.call(["java", "-Xmx512m", "-Djava.awt.headless=true",
- "-jar", jmolpath, "-iox", "-g", size_arg,
- "-J", launchscript, "-j", imagescript],
- stdout=jout, stderr=jout, env=env)
+ subprocess.call(["jmol", "-n", "-g", size_arg,
+ "-J", launchscript, "-j", imagescript], stdout=jout)
if not os.path.isfile(targetfile):
raise RuntimeError("Jmol failed to create file %s, see %s for details"%(repr(targetfile), repr(scratchout)))
os.unlink(scratchout)