sagemath/sagemath-extensions.patch
Jerry James 05ae6fe453 Rebuild for ntl 11.4.0.
Add primecount support, including the -primecount patch.
Add still more gap packages, nearly finishing the set shipped by upstream.
2019-09-26 13:15:26 -06:00

160 lines
6.4 KiB
Diff

diff -up src/module_list.py.orig src/module_list.py
--- src/module_list.py.orig 2019-06-26 14:41:04.000000000 -0600
+++ src/module_list.py 2019-09-17 16:06:38.678583204 -0600
@@ -357,16 +357,16 @@ ext_modules = [
Extension('sage.graphs.matchpoly',
sources = ['sage/graphs/matchpoly.pyx']),
- OptionalExtension("sage.graphs.mcqd",
+ Extension("sage.graphs.mcqd",
["sage/graphs/mcqd.pyx"],
language = "c++",
- package = 'mcqd'),
+ libraries = ['mcqd']),
- OptionalExtension("sage.graphs.bliss",
+ Extension("sage.graphs.bliss",
["sage/graphs/bliss.pyx"],
language = "c++",
- libraries = ['bliss'],
- package = 'bliss'),
+ include_dirs = ['/usr/include/bliss'],
+ libraries = ['bliss']),
Extension('sage.graphs.planarity',
sources = ['sage/graphs/planarity.pyx'],
@@ -385,10 +385,10 @@ ext_modules = [
Extension('sage.graphs.graph_decompositions.cutwidth',
sources = ['sage/graphs/graph_decompositions/cutwidth.pyx']),
- OptionalExtension('sage.graphs.graph_decompositions.tdlib',
- sources = ['sage/graphs/graph_decompositions/tdlib.pyx'],
- language="c++",
- package = 'tdlib'),
+# OptionalExtension('sage.graphs.graph_decompositions.tdlib',
+# sources = ['sage/graphs/graph_decompositions/tdlib.pyx'],
+# language="c++",
+# package = 'tdlib'),
Extension('sage.graphs.spanning_tree',
sources = ['sage/graphs/spanning_tree.pyx']),
@@ -440,9 +440,9 @@ ext_modules = [
##
################################
- OptionalExtension("sage.interfaces.primecount",
+ Extension("sage.interfaces.primecount",
["sage/interfaces/primecount.pyx"],
- package = "primecount"),
+ libraries = ["primecount"]),
Extension('*', ['sage/interfaces/*.pyx']),
@@ -461,21 +461,19 @@ ext_modules = [
##
################################
- OptionalExtension('sage.libs.coxeter3.coxeter',
+ Extension('sage.libs.coxeter3.coxeter',
sources = ['sage/libs/coxeter3/coxeter.pyx'],
- include_dirs = [os.path.join(SAGE_INC, 'coxeter')],
+ include_dirs = ['/usr/include/coxeter'],
language="c++",
- libraries = ['coxeter3'],
- package = 'coxeter3'),
+ libraries = ['coxeter3']),
Extension('sage.libs.ecl',
sources = ["sage/libs/ecl.pyx"]),
- OptionalExtension("sage.libs.fes",
+ Extension("sage.libs.fes",
["sage/libs/fes.pyx"],
language = "c",
- libraries = ['fes'],
- package = 'fes'),
+ libraries = ['fes']),
Extension('sage.libs.flint.flint',
sources = ["sage/libs/flint/flint.pyx"],
@@ -504,10 +502,9 @@ ext_modules = [
sources = ["sage/libs/homfly.pyx"],
libraries = ["homfly", "gc"]),
- OptionalExtension('sage.libs.sirocco',
+ Extension('sage.libs.sirocco',
sources = ["sage/libs/sirocco.pyx"],
libraries = ["sirocco"],
- package="sirocco",
language = 'c++'),
Extension('*', ['sage/libs/linbox/*.pyx']),
@@ -527,10 +524,10 @@ ext_modules = [
Extension('sage.libs.lrcalc.lrcalc',
sources = ["sage/libs/lrcalc/lrcalc.pyx"]),
- OptionalExtension("sage.libs.meataxe",
- sources = ['sage/libs/meataxe.pyx'],
- libraries = ['mtx'],
- package = 'meataxe'),
+# OptionalExtension("sage.libs.meataxe",
+# sources = ['sage/libs/meataxe.pyx'],
+# libraries = ['mtx'],
+# package = 'meataxe'),
Extension('*', ['sage/libs/pari/*.pyx']),
@@ -841,10 +838,10 @@ ext_modules = [
Extension('sage.matrix.matrix_window',
sources = ['sage/matrix/matrix_window.pyx']),
- OptionalExtension("sage.matrix.matrix_gfpn_dense",
- sources = ['sage/matrix/matrix_gfpn_dense.pyx'],
- libraries = ['mtx'],
- package = 'meataxe'),
+# OptionalExtension("sage.matrix.matrix_gfpn_dense",
+# sources = ['sage/matrix/matrix_gfpn_dense.pyx'],
+# libraries = ['mtx'],
+# package = 'meataxe'),
Extension('sage.matrix.misc',
sources = ['sage/matrix/misc.pyx']),
@@ -1021,26 +1018,25 @@ ext_modules = [
Extension("sage.numerical.backends.interactivelp_backend",
["sage/numerical/backends/interactivelp_backend.pyx"]),
- OptionalExtension("sage.numerical.backends.gurobi_backend",
- ["sage/numerical/backends/gurobi_backend.pyx"],
- libraries = ["gurobi"],
- condition = os.path.isfile(SAGE_INC + "/gurobi_c.h") and
- os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")),
+# OptionalExtension("sage.numerical.backends.gurobi_backend",
+# ["sage/numerical/backends/gurobi_backend.pyx"],
+# libraries = ["gurobi"],
+# condition = os.path.isfile(SAGE_INC + "/gurobi_c.h") and
+# os.path.isfile(SAGE_LOCAL + "/lib/libgurobi.so")),
- OptionalExtension("sage.numerical.backends.cplex_backend",
- ["sage/numerical/backends/cplex_backend.pyx"],
- libraries = ["cplex"],
- condition = os.path.isfile(SAGE_INC + "/cplex.h") and
- os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")),
+# OptionalExtension("sage.numerical.backends.cplex_backend",
+# ["sage/numerical/backends/cplex_backend.pyx"],
+# libraries = ["cplex"],
+# condition = os.path.isfile(SAGE_INC + "/cplex.h") and
+# os.path.isfile(SAGE_LOCAL + "/lib/libcplex.a")),
- OptionalExtension("sage.numerical.backends.coin_backend",
+ Extension("sage.numerical.backends.coin_backend",
["sage/numerical/backends/coin_backend.pyx"],
language = 'c++',
libraries = ["Cbc", "CbcSolver", "Cgl", "Clp", "CoinUtils",
"OsiCbc", "OsiClp", "Osi"] + lapack_libs,
library_dirs = lapack_library_dirs,
- include_dirs = lapack_include_dirs,
- package = 'cbc'),
+ include_dirs = lapack_include_dirs),
################################
##