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sagemath/sagemath.spec

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# of a system package
%global __provides_exclude_from .*/site-packages/.*\\.so
# for quicker test with packages not yet in fedora
%global packager_debug 0
# for quicker fedora-review tests without downloading the main tarball
%global download_tarball 0
# not functional due to missing jar dependencies
%global with_sage3d 0
# use an workaround to match upstream sagemath patched sphinx
%global with_sphinx_hack 1
# sagemath works only with pexpect-2.0
%global with_sage_pexpect 1
# https://bugzilla.redhat.com/show_bug.cgi?id=909510
%global have_lrcalc %{packager_debug}
# Cbc dependency under review is as follow:
# first need coin-or-CoinUtils
# https://bugzilla.redhat.com/show_bug.cgi?id=894585
# then coin-or-Osi (that requires coin-or-CoinUtils)
# https://bugzilla.redhat.com/show_bug.cgi?id=894586
# then coin-or-Clp (that requires coin-or-Osi)
# https://bugzilla.redhat.com/show_bug.cgi?id=894587
# then coin-or-Cgl (that requires coin-or-Clp)
# https://bugzilla.redhat.com/show_bug.cgi?id=894588
# and finally coin-or-Cbc (that requires coin-or-Cgl)
# https://bugzilla.redhat.com/show_bug.cgi?id=894597
# other coin-or-* packages under review are not required by sagemath
# but are required to have the "basic" set of coin-or packages
%global have_coin_or_Cbc %{packager_debug}
# https://bugzilla.redhat.com/show_bug.cgi?id=919703
# https://bitbucket.org/vbraun/libgap/issue/1/please-make-tarball-downloads-available
%global have_libgap 0
# https://bugzilla.redhat.com/show_bug.cgi?id=914936
%ifarch %{ix86} x86_64
%global have_fes %{packager_debug}
%else
%global have_fes 0
%endif
# set to run sage -testall in %%install
%global with_check 0
%global SAGE_TIMEOUT 60
%global SAGE_TIMEOUT_LONG 180
%global conway_polynomials_pkg conway_polynomials-0.4.p0
%global elliptic_curves_pkg elliptic_curves-0.7
%global flintqs_pkg flintqs-20070817.p8
%global graphs_pkg graphs-20120404.p4
%global pexpect_pkg pexpect-2.0.p5
%global polytopes_db_pkg polytopes_db-20120220
%global rubiks_pkg rubiks-20070912.p18
%global sagenb_pkg sagenb-0.10.4
%global sagetex_pkg sagetex-2.3.4
%global sagemath_share %{_datadir}/%{name}
%global SAGE_ROOT %{_libdir}/sagemath
%global SAGE_LOCAL %{SAGE_ROOT}/local
%global SAGE_SRC %{SAGE_ROOT}/src
%global SAGE_DOC %{_docdir}/%{name}
%global SAGE_SHARE %{_datadir}/sagemath
%global SAGE_EXTCODE %{SAGE_SHARE}/ext
%global SAGE_PYTHONPATH %{SAGE_ROOT}/site-packages
Name: sagemath
Group: Applications/Engineering
Summary: A free open-source mathematics software system
Version: 5.10
Release: 2%{?dist}
# The file ${SAGE_ROOT}/COPYING.txt is the upstream license breakdown file
# Additionally, every $files section has a comment with the license name
# before files with that license
License: ASL 2.0 and BSD and GPL+ and GPLv2+ and LGPLv2+ and MIT and Public Domain
URL: http://www.sagemath.org
%if %{download_tarball}
Source0: http://boxen.math.washington.edu/home/%{name}/sage-mirror/src/sage-%{version}.tar
%else
Source0: sage-%{version}.tar
%endif
Source1: gprc.expect
Source2: makecmds.sty
# not installed by jmol package, use one in sagemath jmol spkg
Source3: Jmol.js
Source4: JmolHelp.html
# from jmol-12.3.27.p2 spkg
Source5: testjava.sh
# 1. scons ignores most environment variables
# 2. scons 2.2* does not have soname support (expected for scons 2.3*)
# This patch adds some regex substition templates for CFLAGS, etc, and
# minor adaptation from full scons patch at:
# http://scons.tigris.org/nonav/issues/showattachment.cgi/902/soname_func.py
# Discussed at:
# http://scons.tigris.org/issues/show_bug.cgi?id=2869
Patch0: %{name}-scons.patch
# Upstream uses mpir not gmp, but the rpm package is tailored to use gmp
Patch1: %{name}-gmp.patch
# Set of patches to work with system wide packages
Patch2: %{name}-scripts.patch
# Do not mandate a patched ntl. It was requested to ntl upstream to
# provide an api to match what sagemath expects.
# http://shoup.net/pipermail/ntl_shoup.net/2012-April/000033.html
Patch3: %{name}-unpatched_ntl.patch
# Adapt to ntl 6.0.0.
Patch4: %{name}-ntl6.patch
# remove call to not implemented sagemath "is_package_installed" interfaces
# need to package coin-or solver in fedora
# remove check for non free solvers
Patch5: %{name}-extensions.patch
# helper to:
# o respect a DESTDIR environment variable
# o avoid double '//' in pathnames, what can confused debugedit & co
# o minor change to help in incremental builds by avoiding rebuilding
# files
# o do not assume there is an installed sagemath
Patch6: %{name}-rpmbuild.patch
# build documentation in buildroot environment
Patch7: %{name}-sagedoc.patch
# sage notebook rpm and system environment adjustments
Patch8: %{name}-sagenb.patch
# do not attempt to create state files in system directories
Patch9: %{name}-readonly.patch
# force coercion of ecl t_string to ecl t_base_string
# this is hackish and only required if ecl is built with unicode support
Patch10: %{name}-ecl-unicode.patch
# do not link explicitly to png12
Patch11: %{name}-png.patch
# work with all maxima-runtime lisp backend packages
Patch12: %{name}-maxima.patch
# execute 4ti2 programs in $PATH not in $SAGE_ROOT/local/bin
Patch13: %{name}-4ti2.patch
# http://trac.sagemath.org/sage_trac/ticket/12992
# http://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=1317
Patch14: %{name}-pari.patch
# in fedora 18 it was updated to latest fplll
Patch15: %{name}-fplll.patch
# Portuguese translations: http://trac.sagemath.org/sage_trac/ticket/12822
Patch16: trac_12502_pt_translation_of_a_tour_of_sage_rebase1.patch
Patch17: trac_12822_pt_translation_of_tutorial.patch
Patch18: trac_12822_pt_translation_of_tutorial_rev1.patch
# wrappers for distros with libmpc 0.9
Patch19: %{name}-libmpc.patch
# use jmol itself to export preview images
# FIXME besides not using X and told so, fails if DISPLAY is not set
Patch20: %{name}-jmol.patch
# adapt for maxima 5.29.1 package
Patch21: %{name}-maxima.system.patch
# only cremona mini database built and installed
# FIXME add a package with the full cremona database
# FIXME actually it should be already available in pari-elldata
Patch22: %{name}-cremona.patch
# lrslib is a requires
Patch23: %{name}-lrslib.patch
# nauty cannot be packaged due to license restrictions
# http://cs.anu.edu.au/~bdm/nauty/
# http://pallini.di.uniroma1.it/
Patch24: %{name}-nauty.patch
# gap hap package not (yet) available
# http://www-gap.mcs.st-and.ac.uk/Packages/hap.html
Patch25: %{name}-gap-hap.patch
# Patch to enable lrcalc once review request is done in Fedora
Patch26: %{name}-lrcalc.patch
# Patch to enable cbc once review requests are done in Fedora
Patch27: %{name}-cbc.patch
# Patch to enable libgap once review request is done in Fedora
Patch28: %{name}-libgap.patch
# Patch to disable libgap because it is not optional by default
Patch29: %{name}-nolibgap.patch
# Patch to enable fes once review requests are done in Fedora
Patch30: %{name}-fes.patch
# Get package to build with known problem if not yet updated to pari 2.6.
Patch31: %{name}-nopari2.6.patch
# sagemath 5.8 (optionally) requires cryptominisat 2.9.6 (in rawhide)
# and does not work with cryptominisat 2.9.5 (in f18)
Patch32: %{name}-cryptominisat.patch
# Adapt to m4rie 20130416
Patch33: %{name}-m4rie.patch
# Until cython is fixed for f18 and f19; just override wrong cython definition
# https://bugzilla.redhat.com/show_bug.cgi?id=961372
Patch34: %{name}-rh_bz_961372.patch
# Required if running python-flask-0.10.1
# sagemath expects python-flask-0.9
Patch35: %{name}-flask.patch
BuildRequires: 4ti2
BuildRequires: atlas-devel
BuildRequires: cddlib-tools
BuildRequires: cliquer-devel
%if %{have_coin_or_Cbc}
BuildRequires: coin-or-Cbc-devel
%endif
BuildRequires: cryptominisat-devel
BuildRequires: Cython
BuildRequires: desktop-file-utils
BuildRequires: dos2unix
BuildRequires: dvipng
BuildRequires: ecl
BuildRequires: eclib-devel
BuildRequires: factory-devel
%if %{have_fes}
BuildRequires: fes-devel
%endif
BuildRequires: flint-devel >= 2.3
BuildRequires: gmp-ecm-devel
BuildRequires: gap
BuildRequires: GAPDoc
BuildRequires: gap-character-tables
BuildRequires: gap-prim-groups
BuildRequires: gap-small-groups
BuildRequires: gap-sonata
BuildRequires: gap-table-of-marks
BuildRequires: gap-trans-groups
BuildRequires: gc-devel
BuildRequires: gd-devel
BuildRequires: gfan
BuildRequires: glpk-devel
BuildRequires: gnutls-devel
BuildRequires: gsl-devel
BuildRequires: iml-devel
BuildRequires: L-function-devel
BuildRequires: libfac-devel
BuildRequires: libfplll-devel
%if %{have_libgap}
BuildRequires: libgap-devel
%endif
BuildRequires: libmpc-devel
BuildRequires: linbox-devel
%if %{have_lrcalc}
BuildRequires: lrcalc-devel
%endif
BuildRequires: m4ri-devel
BuildRequires: m4rie-devel
BuildRequires: maxima-runtime-ecl
BuildRequires: mpfi-devel
BuildRequires: ntl-devel
BuildRequires: numpy
BuildRequires: palp
BuildRequires: pari-devel
BuildRequires: pari-gp
BuildRequires: ppl-devel
BuildRequires: pynac-devel
BuildRequires: python2-devel
BuildRequires: python-flask-autoindex
BuildRequires: python-flask-babel
BuildRequires: python-flask-openid
BuildRequires: python-flask-silk
BuildRequires: python-ipython
BuildRequires: python-matplotlib
BuildRequires: python-networkx
BuildRequires: python-twisted-web
BuildRequires: python-twisted-web2
BuildRequires: polybori-devel
BuildRequires: R
BuildRequires: ratpoints-devel
BuildRequires: readline-devel
%if 0%{?fedora} > 18
BuildRequires: rpy
%endif
BuildRequires: scons
BuildRequires: Singular-devel
%if 0%{?fedora} >= 18
BuildRequires: stix-math-fonts
%else
BuildRequires: stix-fonts
%endif
BuildRequires: sympow
BuildRequires: sympy
BuildRequires: symmetrica-devel
BuildRequires: texlive
Requires: 4ti2
Requires: apache-commons-cli
Requires: cddlib-tools
Requires: Cython
Requires: ecl
Requires: firefox
Requires: gap
Requires: GAPDoc
Requires: gap-character-tables
Requires: gap-prim-groups
Requires: gap-small-groups
Requires: gap-sonata
Requires: gap-table-of-marks
Requires: gap-trans-groups
Requires: genus2reduction
Requires: gfan
Requires: gmp-ecm
Requires: jmol
Requires: jsmath-fonts
Requires: lrslib-utils
Requires: maxima-gui
Requires: maxima-runtime-ecl
Requires: palp
Requires: pari-gp
Requires: python-crypto
Requires: python-cvxopt
Requires: python-flask-autoindex
Requires: python-flask-babel
Requires: python-flask-openid
Requires: python-flask-silk
Requires: python-ipython
Requires: python-matplotlib
Requires: python-networkx
Requires: python-polybori
Requires: python-twisted-web
Requires: python-twisted-web2
Requires: python-ZODB3
Requires: R
Requires: rpy
Requires: %{name}-core
Requires: %{name}-data
Requires: %{name}-doc-en
Requires: %{name}-notebook
Requires: %{name}-rubiks
Requires: %{name}-sagetex
Requires: Singular
%if 0%{?fedora} >= 18
Requires: stix-math-fonts
%else
Requires: stix-fonts
%endif
Requires: sympow
Requires: sympy
Requires: tachyon
Requires: texlive
Requires: vecmath
ExclusiveArch: %{ix86} x86_64
%description
Sage is a free open-source mathematics software system licensed
under the GPL. It combines the power of many existing open-source
packages into a common Python-based interface.
#------------------------------------------------------------------------
%package core
Summary: Open Source Mathematics Software
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description core
This package contains the core sagemath python modules.
#------------------------------------------------------------------------
%package data
Summary: Databases and scripts for %{name}
Group: Applications/Engineering
Requires: %{name} = %{version}-%{release}
Requires: %{name}-data-conway_polynomials = %{version}-%{release}
Requires: %{name}-data-elliptic_curves = %{version}-%{release}
Requires: %{name}-data-extcode = %{version}-%{release}
Requires: %{name}-data-graphs = %{version}-%{release}
Requires: %{name}-data-polytopes_db = %{version}-%{release}
BuildArch: noarch
%description data
Collection of databases and interface customization scripts for sagemath.
#------------------------------------------------------------------------
%package data-conway_polynomials
Summary: Conway Polynomials Database
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-conway_polynomials
Small database of Conway polynomials for sagemath.
#------------------------------------------------------------------------
%package data-elliptic_curves
Summary: Databases of elliptic curves
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-elliptic_curves
Includes two databases:
* A small subset of the data in John Cremona's database of elliptic curves up
to conductor 10000. See http://www.warwick.ac.uk/~masgaj/ftp/data/ or
http://sage.math.washington.edu/cremona/INDEX.html
* William Stein's database of interesting curves
#------------------------------------------------------------------------
%package data-extcode
Summary: Extcode for Sagemath
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-extcode
Collection of scripts and interfaces to sagemath.
#------------------------------------------------------------------------
%package data-graphs
Summary: Sagemath database of graphs
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-graphs
A database of graphs. Created by Emily Kirkman based on the work of Jason
Grout. Since April 2012 it also contains the ISGCI graph database.
#------------------------------------------------------------------------
%package data-polytopes_db
Summary: Lists of 2- and 3-dimensional reflexive polytopes
Group: Applications/Engineering
Requires: %{name}-data = %{version}-%{release}
BuildArch: noarch
%description data-polytopes_db
The list of polygons is quite easy to get and it has been known for a while.
The list of 3-polytopes was originally obtained by Maximilian Kreuzer and
Harald Skarke using their software PALP, which is included into the standard
distribution of Sage. To work with lattice and reflexive polytopes from Sage
you can use sage.geometry.lattice_polytope module, which relies on PALP for
some of its functionality. To get access to the databases of this package, use
ReflexivePolytope and ReflexivePolytopes commands.
#------------------------------------------------------------------------
%package devel
Summary: Development files for %{name}
Group: Development/Libraries
Requires: %{name}%{?_isa} = %{version}-%{release}
%description devel
This package contains the header files and development documentation
for %{name}.
#------------------------------------------------------------------------
%package doc
Summary: Documentation infrastructure files for %{name}
Group: Documentation
BuildArch: noarch
%description doc
This package contains the documentation infrastructure for %{name}.
#------------------------------------------------------------------------
%package doc-de
Summary: German documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-de
This package contains the German %{name} documentation.
#------------------------------------------------------------------------
%package doc-en
Summary: English documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-en
This package contains the English %{name} documentation.
#------------------------------------------------------------------------
%package doc-fr
Summary: French documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-fr
This package contains the French %{name} documentation.
#------------------------------------------------------------------------
%package doc-pt
Summary: Portuguese documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-pt
This package contains the Portuguese %{name} documentation.
#------------------------------------------------------------------------
%package doc-ru
Summary: Russian documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-ru
This package contains the Russian %{name} documentation.
#------------------------------------------------------------------------
%package doc-tr
Summary: Turkish documentation files for %{name}
Group: Documentation
Requires: %{name}-doc = %{version}-%{release}
BuildArch: noarch
%description doc-tr
This package contains the Turkish %{name} documentation.
#------------------------------------------------------------------------
%package notebook
Summary: The Sage Notebook
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description notebook
The Sage Notebook is a web-based graphical user interface for
mathematical software.
#------------------------------------------------------------------------
%package rubiks
Summary: Several programs for working with Rubik's cubes
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description rubiks
Several programs for working with Rubik's cubes, by three different people.
In summary the three contributors are:
Michael Reid (GPL) http://www.math.ucf.edu/~reid/Rubik/optimal_solver.html
optimal - uses many pre-computed tables to find an optimal
solution to the 3x3x3 Rubik's cube
Dik T. Winter (MIT License)
cube - uses Kociemba's algorithm to iteratively find a short
solution to the 3x3x3 Rubik's cube
size222 - solves a 2x2x2 Rubik's cube
Eric Dietz (GPL) http://www.wrongway.org/?rubiksource
cu2 - A fast, non-optimal 2x2x2 solver
cubex - A fast, non-optimal 3x3x3 solver
mcube - A fast, non-optimal 4x4x4 solver
#------------------------------------------------------------------------
%package sagetex
Summary: Sagemath into LaTeX documents
Group: Applications/Engineering
Requires: %{name}%{?_isa} = %{version}-%{release}
%description sagetex
This is the SageTeX package. It allows you to embed code, results of
computations, and plots from the Sage mathematics software suite
(http://sagemath.org) into LaTeX documents.
########################################################################
%prep
%setup -q -n sage-%{version}
mkdir -p spkg/build
pushd spkg/build
for pkg in \
%{conway_polynomials_pkg} \
%{elliptic_curves_pkg} \
extcode-%{version} \
%{flintqs_pkg} \
%{graphs_pkg} \
%if %{with_sage_pexpect}
%{pexpect_pkg} \
%endif
%{polytopes_db_pkg} \
%{rubiks_pkg} \
%{sagenb_pkg} \
%{sagetex_pkg} \
sage-%{version} \
sage_scripts-%{version} \
; do
tar jxf ../standard/$pkg.spkg
done
# apply in spkgs that do not have patches already applied
# or that actually have patches
pushd %{flintqs_pkg}/src
for diff in `ls ../patches/*.patch`; do
patch -p1 < $diff
done
popd
pushd %{sagenb_pkg}/src
tar zxf %{sagenb_pkg}.tar.gz
mv %{sagenb_pkg} sagenb
popd
%if %{with_sage_pexpect}
pushd %{pexpect_pkg}/src
for diff in `ls ../patches/*.patch ../patches/*.diff`; do
patch -p1 < $diff
done
popd
%endif
pushd %{rubiks_pkg}
cp patches/dietz-mcube-Makefile src/dietz/mcube/Makefile
cp patches/dietz-solver-Makefile src/dietz/solver/Makefile
cp patches/dietz-cu2-Makefile src/dietz/cu2/Makefile
cp patches/reid-Makefile src/reid/Makefile
popd
popd
%patch0 -p1
%patch1 -p1
%patch2 -p1
%if 0%{?fedora} < 19
%patch3 -p1
%else
%patch4 -p1
%endif
%patch5 -p1
%patch6 -p1
%patch7 -p1
%patch8 -p1
%patch9 -p1
%patch10 -p1
%patch11 -p1
%patch12 -p1
%patch13 -p1
%patch14 -p1
%if 0%{?fedora} >= 18
%patch15 -p1
%endif
pushd spkg/build/sage-%{version}
mkdir -p doc/pt/a_tour_of_sage/
cp -fa doc/en/a_tour_of_sage/*.png doc/pt/a_tour_of_sage/
%patch16 -p1
%patch17 -p1
%patch18 -p1
popd
%if 0%{?fedora} <= 19
%patch19 -p1
%endif
%patch20 -p1
%if 0%{?fedora} >= 18
%if 0%{?fedora} < 20
%patch21 -p1
%endif
%endif
%patch22 -p1
%patch23 -p1
%patch24 -p1
%patch25 -p1
%if %{have_lrcalc}
%patch26 -p1
%endif
# other coin-or packages are build requires or coin-or-Cbc
%if %{have_coin_or_Cbc}
%patch27 -p1
%endif
%if %{have_libgap}
%patch28 -p1
%else
%patch29 -p1
%endif
%if %{have_fes}
%patch30 -p1
%endif
%patch31 -p1
%if 0%{?fedora} >= 19
%patch32 -p1
%endif
%if 0%{?fedora} == 19
%patch33 -p1
%endif
%if 0%{?fedora} <= 19
%patch34 -p1
%endif
%if 0%{?fedora} >= 20
%patch35 -p1
%endif
#------------------------------------------------------------------------
# ensure proper/preferred libatlas is in linker path
pushd spkg/build/sage-%{version}
perl -pi -e 's|^(extra_link_args = ).*|$1\["-L%{_libdir}/atlas"\]|;' sage/misc/cython.py
# some .c files are not (re)generated
find . \( -name \*.pyx -o -name \*.pxd \) | xargs touch
popd
# remove bundled jar files before build
rm spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data/sage3d/lib/sage3d.jar
# remove binary egg
rm -r spkg/build/%{sagenb_pkg}/src/sagenb/sagenb.egg-info
########################################################################
%build
export CFLAGS="%{optflags}"
export CXXFLAGS="%{optflags}"
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
export SAGE_SRC=%{buildroot}%{SAGE_SRC}
export SAGE_FORTRAN=%{_bindir}/gfortran
export SAGE_FORTRAN_LIB=`gfortran --print-file-name=libgfortran.so`
%if 0%{?fedora} > 20
export SAGE_BLAS=satlas
%endif
export DESTDIR=%{buildroot}
# Use file in /tmp because there are issues with long pathnames
export DOT_SAGE=/tmp/sage$$
mkdir -p $DOT_SAGE/tmp
# match system packages as sagemath packages
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
export SAGE_SRC=%{buildroot}%{SAGE_SRC}
mkdir -p $SAGE_ROOT $SAGE_LOCAL $SAGE_SRC
ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_SRC/sage
ln -sf %{_libdir} $SAGE_LOCAL/lib
ln -sf %{_includedir} $SAGE_LOCAL/include
ln -sf %{_datadir} $SAGE_LOCAL/share
export PATH=%{buildroot}%{_bindir}:$PATH
export PYTHONPATH=%{buildroot}%{python_sitearch}:$PYTHONPATH
#------------------------------------------------------------------------
pushd spkg/build/sage-%{version}
sed -e 's|@@libdir@@|%{_libdir}|g' \
-i setup.py
pushd c_lib
# scons ignores most environment variables
# and does not have soname support
sed -e 's|@@includedir@@|%{_includedir}|g' \
-e 's|@@libdir@@|%{_libdir}|g' \
-e 's|@@optflags@@|%{optflags}|g' \
-e 's|@@__global_ldflags@@|%{__global_ldflags}|g' \
-i SConstruct
CXX=g++ UNAME=Linux SAGE64=auto scons
ln -s libcsage.so.0 libcsage.so
popd
pushd sage/libs/mpmath
dos2unix ext_impl.pxd ext_libmp.pyx ext_main.pxd ext_main.pyx
popd
python ./setup.py build
popd
#------------------------------------------------------------------------
pushd spkg/build/%{sagenb_pkg}/src/sagenb
python ./setup.py build
popd
#------------------------------------------------------------------------
pushd spkg/build/%{flintqs_pkg}/src
make %{?_smpflags} CPP="g++ %{optflags} -fPIC"
popd
pushd spkg/build/%{rubiks_pkg}/src
make %{?_smp_mflags} CC="gcc -fPIC" CXX="g++ -fPIC" CFLAGS="%{optflags}" CXXFLAGS="%{optflags}"
popd
# last build command
rm -fr $DOT_SAGE
########################################################################
%install
export SAGE_ROOT=%{buildroot}%{SAGE_ROOT}
export SAGE_LOCAL=%{buildroot}%{SAGE_LOCAL}
export SAGE_SRC=%{buildroot}%{SAGE_SRC}
export SAGE_SHARE=%{buildroot}%{SAGE_SHARE}
export SAGE_EXTCODE=%{buildroot}%{SAGE_EXTCODE}
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
export SAGE_PYTHONPATH=%{buildroot}%{SAGE_PYTHONPATH}
export LD_LIBRARY_PATH=%{buildroot}%{_libdir}:$LD_LIBRARY_PATH
export DESTDIR=%{buildroot}
export DOT_SAGE=/tmp/sage$$
mkdir -p $DOT_SAGE/tmp
export PATH=%{buildroot}%{_bindir}:$PATH
export PYTHONPATH=%{buildroot}%{python_sitearch}:$PYTHONPATH
#------------------------------------------------------------------------
mkdir -p %{buildroot}%{_bindir}
mkdir -p %{buildroot}%{_libdir}
mkdir -p $SAGE_PYTHONPATH
rm -fr $SAGE_LOCAL/{include,lib,share,notebook}
mkdir -p $SAGE_SHARE $SAGE_DOC $SAGE_LOCAL/bin $SAGE_SRC
ln -sf $PWD/spkg/build/sage-%{version}/sage $SAGE_SRC/sage
ln -sf %{_libdir} $SAGE_LOCAL/lib
ln -sf %{_includedir} $SAGE_LOCAL/include
ln -sf %{_datadir} $SAGE_LOCAL/share
#------------------------------------------------------------------------
pushd spkg/build/sage-%{version}
python setup.py install --root=%{buildroot}
cp -fa c_lib/libcsage.so.0 %{buildroot}%{_libdir}
ln -sf libcsage.so.0 %{buildroot}%{_libdir}/libcsage.so
pushd sage
# install sage notebook templates
cp -fa server/notebook/templates %{buildroot}%{python_sitearch}/sage/server/notebook
popd
# install documentation sources
rm -fr $SAGE_DOC/{common,en,fr}
cp -far doc/{common,de,en,fr,pt,ru,tr} $SAGE_DOC
popd
#------------------------------------------------------------------------
pushd spkg/build/%{sagenb_pkg}/src/sagenb
rm -f %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
python setup.py install --root=%{buildroot} --install-purelib=%{python_sitearch}
install -p -m0755 %{SOURCE5} $SAGE_LOCAL/bin/testjava.sh
# jmol
rm -fr %{buildroot}%{python_sitearch}/sagenb/data/jmol
mkdir -p %{buildroot}%{python_sitearch}/sagenb/data/jmol/appletweb
pushd %{buildroot}%{python_sitearch}/sagenb/data/jmol
cp -fa %{SOURCE3} %{SOURCE4} appletweb
popd
# sage3d
rm -f %{buildroot}%{_bindir}/sage3d
%if %{with_sage3d}
ln -sf %{SAGE_LOCAL}/bin/sage3d %{buildroot}%{python_sitearch}/sagenb/data/sage3d/sage3d
%endif
# flask stuff not installed
cp -ar flask_version %{buildroot}%{python_sitearch}/sagenb
ln -sf %{python_sitearch}/sagenb %{buildroot}%{SAGE_SRC}/sagenb
popd
#------------------------------------------------------------------------
%if %{with_sage_pexpect}
pushd spkg/build/%{pexpect_pkg}/src
cp -fa {ANSI,FSM,pexpect,pxssh,screen}.py $SAGE_PYTHONPATH
popd
%endif
#------------------------------------------------------------------------
cp -fa COPYING.txt $SAGE_ROOT
pushd spkg/build/sage_scripts-%{version}
mkdir -p $SAGE_LOCAL/bin
cp -fa sage-* $SAGE_LOCAL/bin
pushd $SAGE_LOCAL/bin
ln -sf %{_bindir}/python sage.bin
ln -sf %{_bindir}/gp sage_pari
ln -sf %{_bindir}/gap gap_stamp
ln -sf %{_bindir}/gmp-ecm ecm
popd
popd
install -p -m755 spkg/bin/sage $SAGE_LOCAL/bin
#------------------------------------------------------------------------
pushd spkg/build/%{flintqs_pkg}/src
cp -fa QuadraticSieve $SAGE_LOCAL/bin
popd
pushd spkg/build/%{rubiks_pkg}/src
cp -fa \
reid/optimal \
dietz/solver/cubex \
dietz/mcube/mcube \
dietz/cu2/cu2 \
dik/dikcube \
dik/size222 \
$SAGE_LOCAL/bin
popd
#------------------------------------------------------------------------
pushd $SAGE_LOCAL/bin/
for file in \
sage-apply-ticket \
sage-bdist \
sage-build \
sage-clone \
sage-combinat \
sage-crap \
sage-list-experimental \
sage-list-optional \
sage-list-packages \
sage-list-standard \
sage-location \
sage-make_devel_packages \
sage-omega \
sage-pkg \
sage-pull \
sage-push \
sage-pypkg-location \
sage-README-osx.txt \
sage-rebaseall.bat \
sage-rebaseall.sh \
sage-rebase.bat \
sage-rebase.sh \
sage-rsyncdist \
sage-sdist \
sage-spkg-install \
sage-startuptime.py \
sage-sync-build.py \
sage-test-import \
sage-update \
sage-update-build \
sage-upgrade \
spkg-install; do
rm -f $file
done
popd
#------------------------------------------------------------------------
pushd spkg/build/%{conway_polynomials_pkg}
%__python2 ./spkg-install
popd
#------------------------------------------------------------------------
pushd spkg/build/%{elliptic_curves_pkg}
%__python2 ./spkg-install
popd
#------------------------------------------------------------------------
pushd spkg/build/extcode-%{version}
mkdir -p $SAGE_EXTCODE
for dir in \
gap \
genus2reduction \
gnuplot \
images \
kash \
macaulay2 \
magma \
maple \
matlab \
mathematica \
maxima \
MuPAD \
mwrank \
octave \
QEPCAD \
scilab \
singular \
sobj; do
COUNT=`find $dir -type f | wc -l `
if [ $COUNT -gt 0 ]; then
cp -far $dir $SAGE_EXTCODE
fi
cp -far pari $SAGE_EXTCODE
done
cp -fa %{SOURCE1} $SAGE_EXTCODE/pari
popd
#------------------------------------------------------------------------
pushd spkg/build/%{graphs_pkg}
mkdir -p $SAGE_SHARE/graphs
cp -fa src/* $SAGE_SHARE/graphs
popd
#------------------------------------------------------------------------
pushd spkg/build/%{polytopes_db_pkg}
mkdir -p $SAGE_SHARE/reflexive_polytopes
cp -fa src/* $SAGE_SHARE/reflexive_polytopes
popd
#------------------------------------------------------------------------
pushd spkg/build/%{sagetex_pkg}/src
python setup.py install --root=%{buildroot} --install-purelib=%{python_sitearch}
install -p -m 0644 -D %{SOURCE2} \
%{buildroot}%{_datadir}/texmf/tex/generic/sagetex/makecmds.sty
mv %{buildroot}%{_docdir}/{sagetex,%{sagetex_pkg}}
mv %{buildroot}%{_datadir}/texmf/tex/generic/sagetex/CONTRIBUTORS \
%{buildroot}%{_docdir}/%{sagetex_pkg}
for file in PKG-INFO README; do
install -p -m 0644 $file %{buildroot}%{_docdir}/%{sagetex_pkg}/$file
done
popd
#------------------------------------------------------------------------
cat > %{buildroot}%{_bindir}/sage << EOF
#!/bin/sh
export CUR=\`pwd\`
##export DOT_SAGE="\$HOME/.sage"
export DOT_SAGENB="\$DOT_SAGE"
mkdir -p \$DOT_SAGE/{maxima,sympow,tmp}
export SAGE_TESTDIR=\$DOT_SAGE/tmp
export SAGE_ROOT="$SAGE_ROOT"
export SAGE_LOCAL="$SAGE_LOCAL"
export SAGE_SHARE="$SAGE_SHARE"
export SAGE_EXTCODE="$SAGE_EXTCODE"
export SAGE_SRC="$SAGE_SRC"
##export SAGE_DOC="$SAGE_DOC"
module load 4ti2-%{_arch}
%if %{have_lrcalc}
module load lrcalc-%{_arch}
%endif
module load surf-geometry-%{_arch}
export PATH=$SAGE_LOCAL/bin:\$PATH
export SINGULARPATH=%{_libdir}/Singular/LIB
export SINGULAR_BIN_DIR=%{_libdir}/Singular
##export PYTHONPATH="$SAGE_PYTHONPATH:\$SAGE_LOCAL/bin"
%if 0%{?fedora} > 20
export SAGE_CBLAS=satlas
%else
export SAGE_CBLAS=cblas
%endif
export SAGE_FORTRAN=%{_bindir}/gfortran
export SAGE_FORTRAN_LIB=\`gfortran --print-file-name=libgfortran.so\`
export SYMPOW_DIR="\$DOT_SAGE/sympow"
export LC_MESSAGES=C
export LC_NUMERIC=C
MALLOC_CHECK_=1 $SAGE_LOCAL/bin/sage "\$@"
EOF
#------------------------------------------------------------------------
chmod +x %{buildroot}%{_bindir}/sage
#------------------------------------------------------------------------
%if %{with_sage3d}
cat > %{buildroot}%{SAGE_LOCAL}/bin/sage3d << EOF
#!/bin/sh
java -classpath %{SAGE_SRC}/sage/sagenb/data/sage3d/lib/sage3d.jar:%{_javadir}/j3dcore.jar:%{_javadir}/vecmath.jar:%{_javadir}/j3dutils.jar org.sagemath.sage3d.ObjectViewerApp "\$1"
EOF
chmod +x %{buildroot}%{SAGE_LOCAL}/bin/sage3d
%endif
#------------------------------------------------------------------------
# adjust cython interface:
# o link with proper atlas
# o install csage headers
# o install .pxi and .pxd files
pushd spkg/build/sage-%{version}
# make atlas/blas available to compiled sources
perl -pi -e \
's|^(extra_link_args =).*|$1 ["-L%{_libdir}/atlas"]|;' \
%{buildroot}%{python_sitearch}/sage/misc/cython.py
# make csage headers available
mkdir -p %{buildroot}%{_includedir}/csage
cp -fa c_lib/include/* %{buildroot}%{_includedir}/csage
for f in `find sage \( -name \*.pxi -o -name \*.pxd -o -name \*.pyx \)`; do
install -p -D -m 0644 $f %{buildroot}%{python_sitearch}/$f
done
# need this or will not "find" the files in the directory, and
# fail to link with gmp
touch %{buildroot}%{python_sitearch}/sage/libs/gmp/__init__.py
popd
#------------------------------------------------------------------------
%if %{with_sage_pexpect}
cp -f $SAGE_PYTHONPATH/{ANSI,FSM,pexpect,pxssh,screen}.py %{buildroot}%{python_sitearch}
%endif
# Build documentation, using %#{buildroot} environment
pushd spkg/build/sage-%{version}/doc
export SAGE_DOC=`pwd`
export PATH=%{buildroot}%{_bindir}:$SAGE_LOCAL/bin:$PATH
export SINGULARPATH=%{_libdir}/Singular/LIB
export SINGULAR_BIN_DIR=%{_libdir}/Singular
export LD_LIBRARY_PATH=%{buildroot}%{_libdir}:%{_libdir}/atlas:$LD_LIBRARY_PATH
export PYTHONPATH=%{buildroot}%{python_sitearch}:$SAGE_PYTHONPATH:$SAGE_DOC
%if %{with_sphinx_hack}
cp -far %{python_sitelib}/sphinx %{buildroot}%{python_sitearch}
sed -i "s|\(source.startswith('>>>')\)|\1 or source.startswith('sage: ')|" \
%{buildroot}%{python_sitearch}/sphinx/highlighting.py
%endif
# there we go
ln -sf %{buildroot}%{SAGE_DOC} $SAGE_SRC/doc
python common/builder.py all html
export SAGE_DOC=%{buildroot}%{SAGE_DOC}
cp -far output $SAGE_DOC
# should not be required and encodes buildroot
rm -fr $SAGE_DOC/output/doctrees
sed -e 's|%{buildroot}||g' -i $SAGE_DOC/output/html/en/reference/sage/misc/hg.html
popd
%if %{with_check}
export SAGE_TIMEOUT=%{SAGE_TIMEOUT}
export SAGE_TIMEOUT_LONG=%{SAGE_TIMEOUT_LONG}
sage -testall --verbose || :
install -p -m644 $DOT_SAGE/tmp/test.log $SAGE_DOC/test.log
# remove buildroot references from test.log
sed -i 's|%{buildroot}||g' $SAGE_DOC/test.log
%endif
%if %{with_sage_pexpect}
rm -f %{buildroot}%{python_sitearch}/{ANSI,FSM,pexpect,pxssh,screen}.py{,c}
%endif
%if %{with_sphinx_hack}
rm -fr %{buildroot}%{python_sitearch}/sphinx
%endif
# Script was used to build documentation
perl -pi -e 's|%{buildroot}||g;s|^##||g;' %{buildroot}%{_bindir}/sage
# More wrong buildroot references
perl -pi -e 's|%{buildroot}||g;' \
-e "s|$PWD/spkg/build/sage-%{version}/doc|%{SAGE_DOC}|g;" \
%{buildroot}%{SAGE_DOC}/output/html/en/reference/todolist.html \
%{buildroot}%{SAGE_DOC}/output/html/en/reference/misc/sage/misc/hg.html
#------------------------------------------------------------------------
# Fix links
rm -fr $SAGE_SRC/sage $SAGE_EXTCODE/sage $SAGE_ROOT/doc $SAGE_SRC/doc
rm -fr $SAGE_ROOT/share $SAGE_ROOT/devel
ln -sf %{python_sitearch}/sage $SAGE_SRC/sage
ln -sf %{python_sitearch} $SAGE_EXTCODE/sage
ln -sf %{SAGE_DOC} $SAGE_ROOT/doc
ln -sf %{SAGE_DOC} $SAGE_SRC/doc
ln -sf %{SAGE_SHARE} $SAGE_ROOT/share
# compat devel symlink
ln -sf src $SAGE_ROOT/devel
# Install menu and icons
pushd spkg/build/%{sagenb_pkg}/src/sagenb/sagenb/data
install -p -m644 -D sage/images/icon32x32.png %{buildroot}%{_datadir}/pixmaps/%{name}.png
popd
mkdir -p %{buildroot}%{_datadir}/applications
cat > %{buildroot}%{_datadir}/applications/%{name}.desktop << EOF
[Desktop Entry]
Name=Sagemath
Comment=A free open-source mathematics software system
Exec=sage
Icon=%{name}
Terminal=true
Type=Application
Categories=Science;Math;
EOF
desktop-file-validate %{buildroot}%{_datadir}/applications/%{name}.desktop
# Fix permissions
find %{buildroot} -name '*.so' | xargs chmod 755
pushd %{buildroot}%{SAGE_LOCAL}/bin
chmod 755 QuadraticSieve
chmod 755 mcube dikcube cu2 size222 cubex optimal
popd
for file in `find %{buildroot} -name \*.py`; do
if head -1 $file | grep -q '^#!'; then
chmod +x $file
fi
done
chmod -x %{buildroot}%{SAGE_DOC}/en/prep/media/Rplot001.png
# Documentation is not rebuilt (also corrects rpmlint warning of hidden file)
find %{buildroot}%{SAGE_DOC} -name .buildinfo -exec rm {} \;
rm -fr %{buildroot}%{SAGE_DOC}/output/inventory
find %{buildroot}%{SAGE_DOC} -type d -name _sources | xargs rm -fr
rm %{buildroot}%{python_sitearch}/sagenb/data/mathjax/.gitignore \
%{buildroot}%{python_sitearch}/sagenb/data/mathjax/docs/.gitignore
# remove bundles fonts
rm -r %{buildroot}%{python_sitearch}/sagenb/data/mathjax/fonts
# remove .po files
rm %{buildroot}%{python_sitearch}/sagenb/translations/*/LC_MESSAGES/*.po
# remove zero length files
rm %{buildroot}%{python_sitearch}/sage/server/notebook/compress/all.py* \
%{buildroot}%{python_sitearch}/sage/misc/test_cpickle_sage.py*
%if !%{with_sage3d}
rm -r %{buildroot}%{python_sitearch}/sagenb/data/sage3d
%endif
# last install command
rm -fr $DOT_SAGE
########################################################################
%post core
/sbin/ldconfig
exit 0
%postun core
/sbin/ldconfig
exit 0
# Use symlinks and a minor patch to the notebook to not bundle jmol
%post notebook
ln -sf %{_javadir}/JmolApplet.jar %{python_sitearch}/sagenb/data/jmol/
ln -sf %{_javadir}/vecmath.jar %{python_sitearch}/sagenb/data/jmol/
exit 0
%postun notebook
if [ $1 -eq 0 ] ; then
rm -f %{python_sitearch}/sagenb/data/jmol/JmolApplet.jar
rm -f %{python_sitearch}/sagenb/data/jmol/vecmath.jar
rmdir %{python_sitearch}/sagenb/data/jmol &&
rmdir %{python_sitearch}/sagenb/data &&
rmdir %{python_sitearch}/sagenb
fi
exit 0
%post sagetex
%{_bindir}/mktexlsr
exit 0
%postun sagetex
if [ $1 -eq 0 ] ; then
%{_bindir}/mktexlsr
fi
exit 0
########################################################################
%files
# GPLv2+
%dir %{SAGE_ROOT}
%doc %{SAGE_ROOT}/COPYING.txt
%dir %{SAGE_LOCAL}
%dir %{SAGE_LOCAL}/bin
%{SAGE_LOCAL}/bin/QuadraticSieve
%{SAGE_LOCAL}/bin/ecm
%{SAGE_LOCAL}/bin/gap_stamp
%{SAGE_LOCAL}/bin/sage*
%{SAGE_LOCAL}/bin/testjava.sh
%{SAGE_LOCAL}/include
%{SAGE_LOCAL}/lib
%{SAGE_LOCAL}/share
%{SAGE_ROOT}/doc
%{SAGE_ROOT}/devel
%{SAGE_ROOT}/share
%dir %{SAGE_SRC}
%{SAGE_SRC}/doc
%{SAGE_SRC}/sage
%dir %{SAGE_PYTHONPATH}
%if %{with_sage_pexpect}
# MIT
%{SAGE_PYTHONPATH}/*.py*
%endif
# GPLv2+
%{_bindir}/sage
%{_datadir}/pixmaps/%{name}.png
%{_datadir}/applications/%{name}.desktop
#------------------------------------------------------------------------
%files core
# GPLv2+
%{_libdir}/libcsage.so.*
%{python_sitearch}/sage
%{python_sitearch}/sage-*.egg-info
#------------------------------------------------------------------------
%files data
%dir %{SAGE_SHARE}
%dir %{SAGE_EXTCODE}
%{SAGE_EXTCODE}/sage
#------------------------------------------------------------------------
%files data-conway_polynomials
# GPLv2+
%{SAGE_SHARE}/conway_polynomials
#------------------------------------------------------------------------
%files data-elliptic_curves
# GPLv2+
%{SAGE_SHARE}/cremona
%{SAGE_SHARE}/ellcurves
#------------------------------------------------------------------------
%files data-extcode
# GPLv2+
%{SAGE_EXTCODE}/gap
%{SAGE_EXTCODE}/images
%{SAGE_EXTCODE}/magma
%{SAGE_EXTCODE}/maxima
%{SAGE_EXTCODE}/mwrank
%{SAGE_EXTCODE}/pari
%{SAGE_EXTCODE}/singular
#------------------------------------------------------------------------
%files data-graphs
# GPLv2+
%{SAGE_SHARE}/graphs
#------------------------------------------------------------------------
%files data-polytopes_db
# GPL+
%{SAGE_SHARE}/reflexive_polytopes
#------------------------------------------------------------------------
%files devel
# GPLv2+
%{_includedir}/csage
%{_libdir}/libcsage.so
#------------------------------------------------------------------------
%files doc
# GPLv2+
%dir %{SAGE_DOC}
%{SAGE_DOC}/common
%dir %{SAGE_DOC}/output
%dir %{SAGE_DOC}/output/html
#------------------------------------------------------------------------
%files doc-de
# GPLv2+
%{SAGE_DOC}/de
%{SAGE_DOC}/output/html/de
#------------------------------------------------------------------------
%files doc-en
# GPLv2+
%{SAGE_DOC}/en
%{SAGE_DOC}/output/html/en
#------------------------------------------------------------------------
%files doc-fr
# GPLv2+
%{SAGE_DOC}/fr
%{SAGE_DOC}/output/html/fr
#------------------------------------------------------------------------
%files doc-pt
# GPLv2+
%{SAGE_DOC}/pt
%{SAGE_DOC}/output/html/pt
#------------------------------------------------------------------------
%files doc-ru
# GPLv2+
%{SAGE_DOC}/ru
%{SAGE_DOC}/output/html/ru
#------------------------------------------------------------------------
%files doc-tr
# GPLv2+
%{SAGE_DOC}/tr
%{SAGE_DOC}/output/html/tr
#------------------------------------------------------------------------
%files notebook
# GPLv2+
%{SAGE_SRC}/sagenb
%dir %{python_sitearch}/sagenb
%{python_sitearch}/sagenb/*.py*
%{python_sitearch}/sagenb-*.egg-info
%dir %{python_sitearch}/sagenb/data
# BSD
%{python_sitearch}/sagenb/data/codemirror
# MIT
%{python_sitearch}/sagenb/data/graph_editor
# ASL 2.0
%{python_sitearch}/sagenb/data/highlight
# LGPLv2+
%{python_sitearch}/sagenb/data/jmol
# (MIT or GPLv2) and (MIT and BSD and GPL)
%{python_sitearch}/sagenb/data/jquery
# (MIT or GPLv2) and (MIT and BSD and GPL)
%{python_sitearch}/sagenb/data/jqueryui
# Public Domain
%{python_sitearch}/sagenb/data/json
# ASL 2.0
%{python_sitearch}/sagenb/data/mathjax
# BSD
%{python_sitearch}/sagenb/data/openid-realselector
# GPLv2+
%{python_sitearch}/sagenb/data/sage
%if %{with_sage3d}
# GPLv2+
%{python_sitearch}/sagenb/data/sage3d
%endif
# LGPLv2+
%{python_sitearch}/sagenb/data/tiny_mce
# LGPLv2+
%{python_sitearch}/sagenb/data/zorn
# GPLv2+
%{python_sitearch}/sagenb/flask_version
# GPLv2+
%{python_sitearch}/sagenb/interfaces
# GPLv2+
%{python_sitearch}/sagenb/misc
# GPLv2+
%{python_sitearch}/sagenb/notebook
# GPLv2+
%{python_sitearch}/sagenb/simple
# GPLv2+
%{python_sitearch}/sagenb/storage
# GPLv2+
%dir %{python_sitearch}/sagenb/testing
%{python_sitearch}/sagenb/testing/*.py*
%{python_sitearch}/sagenb/testing/tests
# ASL 2.0
%{python_sitearch}/sagenb/testing/selenium
# GPLv2+
%dir %{python_sitearch}/sagenb/translations
%lang(cs_CZ) %{python_sitearch}/sagenb/translations/cs_CZ
%lang(de_AT) %{python_sitearch}/sagenb/translations/de_AT
%lang(pt_BR) %{python_sitearch}/sagenb/translations/pt_BR
%lang(ru_RU) %{python_sitearch}/sagenb/translations/ru_RU
#------------------------------------------------------------------------
%files rubiks
# GPL+
%{SAGE_LOCAL}/bin/optimal
# MIT
%{SAGE_LOCAL}/bin/dikcube
%{SAGE_LOCAL}/bin/size222
# GPL+
%{SAGE_LOCAL}/bin/cu2
%{SAGE_LOCAL}/bin/cubex
%{SAGE_LOCAL}/bin/mcube
#------------------------------------------------------------------------
%files sagetex
# GPLv2+
%{python_sitearch}/sagetex*
%{_datadir}/texmf/tex/generic/sagetex
%doc %{_docdir}/%{sagetex_pkg}
########################################################################
%changelog
* Fri Oct 4 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.10-2
- Rebuild with newer rawhide atlas.
* Mon Aug 5 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.10-1
- Update to sagemath 5.10.
* Sun Aug 04 2013 Fedora Release Engineering <rel-eng@lists.fedoraproject.org>
- Rebuilt for https://fedoraproject.org/wiki/Fedora_20_Mass_Rebuild
* Wed Jul 3 2013 Jerry James <loganjerry@gmail.com> - 5.9-8
- Rebuild for maxima 5.30.0
* Wed Jun 12 2013 Remi Collet <rcollet@redhat.com> - 5.9-7
- rebuild for new GD 2.1.0
* Tue Jun 4 2013 Jerry James <loganjerry@gmail.com> - 5.9-6
- Rebuild for ecl 2013.5.1
* Sun May 12 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.9-5
- Need one extra directory derefence in symlink SAGE_SRC symlink.
* Sun May 12 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.9-4
- Correct wrong symlink to /builddir if not using pretrans (first install).
* Sat May 11 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.9-3
- Add pretrans for clean upgrade after rename of SAGE_DEVEL to SAGE_SRC.
* Sat May 11 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.9-2
- Build in f18 and f18 with workaround to cython wrong defines (#961372)
* Mon May 6 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.9-1
- Update to sagemath 5.9.
- Match upstream rename of SAGE_DEVEL to SAGE_SRC.
- Merged -buildroot in -rpmbuild patch.
- Drop cython 0.19 patch already applied to sagemath 5.9.
- Add macro conditionals to use same spec and patches in f18, f19 and f20.
* Mon May 6 2013 Jerry James <loganjerry@gmail.com> - 5.8-9
- Rebuild for libfplll 4.0.3, m4ri and m4rie 20130416, and ntl 6.0.0
- Drop sagemath-unpatched_ntl.patch now that Fedora's NTL is patched
- Add sagemath-ntl6.patch to adapt to NTL 6
- Add sagemath-m4rie.patch to adapt to m4rie 20130416
* Sat Apr 27 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-8
- Add surf-geometry to path for proper Singular plotting
- Add workaround to an rpm scriptlet problem (#877651#89)
* Tue Apr 23 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-7
- Correct problem of package requiring a -devel file to work.
* Tue Apr 23 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-6
- Correct a remaining arch specific file (symlink) in noarch package.
* Mon Apr 22 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-5
- Do not build requires optional rpy in f18 due to it being broken in f18
- Correct koji sanity check finding arch specific file in noarch package
- Add patch to build with just upgraded cython in rawhide
* Mon Apr 22 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-4
- Remove noop icon cache regeneration scriplets (#877651#72)
- First Fedora 18 and Fedora 19 approved package
* Sun Apr 14 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-3
- Use proper license tag for non versioned GPL attribution (#877651#63)
- Remove no longer required workarounds for clean upgrades (#877651#63)
* Fri Apr 12 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-2
- Properly describe the license breakdown in the spec (#877651#60)
- Correct lrslib requires to lrslib-utils (#877651#60)
- Remove zero length files (#877651#60)
- Correct png file with executable permission (#877651#60)
- Avoid rpmlint warning in rubiks subpackage description (#877651#60)
* Tue Mar 19 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.8-1
- Update to sagemath 5.8.
- Do full cleanup of notebook package on uninstall.
- Remove with_sage_cython build conditional.
- Remove with_sage_networkx build conditional.
- Add nopari2.6 patch to not rely on not yet available interfaces.
- Add cryptominisat patch to build package in f18.
* Sat Mar 16 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.7-3
- Create jmol symbolic links in post and remove in postun.
- Disable libgap by default as it does not work with rawhide gap.
- Also add python-ipython to build requires to regenerate documentation.
* Wed Mar 6 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.7-2
- Add missing python-ipython requires (#877651#52)
- Enable libgap build in packager debug build (#877651#52)
* Fri Feb 22 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.7-1
- Update to sagemath 5.7.
- Add conditional patch for libgap.
- Add conditional patch for fes.
- Remove with_sage_ipython conditional.
- Add patch to create a libcsage with a soname.
* Mon Feb 18 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.6-6
- Rebuild with latest rawhide and f18 updates
- Make sagemath-notebook owner of its base data directory
- Explicitly mark notebook translations as %%lang (#877651#c46)
- Remove sage3d as it is not functional in the rpm package (#877651#c46)
- Remove reference to buildroot in libcsage.so debuginfo
* Fri Feb 15 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.6-5
- Export CFLAGS and CXXFLAGS (#877651#c45)
- Make sagemath-data owner of SAGE_SHARE (#877651#c45)
- Relocate SAGE_DOC and make sagemath-doc packages noarch (#877651#c45)
- Relocate SAGE_SHARE and make sagemath-data packages noarch (#877651#c45)
- Remove sagenb binary egg bundled in tarball (#877651#c45)
- Update license tag due to unlisted Apache v2 license (#877651#c45)
- Break down licenses in files listing (#877651#c45)
- Add post scriplets to handle the installed icon (#877651#c45)
- Do not install empty directories in SAGE_EXTCODE (#877651#c45)
- Do not install bundled mathjax fonts (#877651#c45)
- Add a descriptive comment to patches without one (#877651#c45)
- Correct mispelled donwload_tarball macro name (#877651#c45)
- Remove reference to buildroot in prep (#877651#c45)
- Simplify coin-or-Cbc build requires as it has proper dependencies
* Sun Feb 10 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.6-4
- Correct "canonicalization unexpectedly shrank by one character" error.
- Add packager_debug macro for conditional package debug mode build.
- Add donwload_tarball macro to avoid fedora-review donwloading it every run.
* Sat Feb 9 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.6-3
- Add cryptominisat-devel to build requires.
- Add conditional build for lrcalc (fedora review rhbz #909510)
- Add conditional build for coin-or-CoinUtils (fedora review rhbz #894585)
- Add conditional build for coin-or-Osi (fedora review rhbz #894586)
- Add conditional build for coin-or-Clp (fedora review rhbz #894587)
- Add conditional build for coin-or-Cgl (fedora review rhbz #894588)
- Add conditional build for coin-or-Cbc (fedora review rhbz #894597)
- Rebuild with latest rawhide and f18 dependency updates.
* Mon Jan 28 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.6-2
- Rebuild with latest rawhide and f18 updates.
* Fri Jan 25 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.6-1
- Update to sagemath 5.6.
- Remove no longer required patch to build with system cython.
* Sat Jan 19 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.5-3
- Rediff rpmbuild patch to address some underlinked modules.
- Make gap-sonata a mandatory requires.
- Add cremona patch to adjust logic as only cremona mini is built.
- Add lrslib patch to know lrslib is available.
- Add nauty patch and comment about reason it cannot be made available.
- Add gap-hap patch for better description of missing gap hap package.
* Fri Jan 04 2013 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.5-2
- Add cython to build requires (#877651#c28).
* Sat Dec 29 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.5-1
- Update to sagemath 5.5.
- Add maxima.system patch to work with maxima 5.29.1 package.
* Fri Dec 14 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.1-5
- Build with system cython by default on fedora 18 or newer (#877651).
* Fri Dec 14 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.1-4
- The fplll patch is also required to build in f18.
- Add factory include to plural.pyx build.
* Wed Dec 05 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.1-3
- Revert requires python-matplotlib-tk as it was a python-matplotlib bug.
- Add stix-fonts requires.
* Sat Dec 01 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.1-2
- Change back to install .c and .h files in bundled cython.
- Make symlink of gmp-ecm to $SAGE_LOCAL/bin/ecm.
- Add SAGE_LOCAL/bin to python path so that "sage -gdb" works.
- Require python-matplotlib-tk to avoid possible import error in doctests.
* Fri Nov 30 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.1-1
- Update to sagemath 5.4.1.
* Tue Nov 20 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4-2
- Do not install alternate cygdb in %%_bindir
- Create the sagemath-core subpackage
- Create the sagemath-doc subpackage
- Create the sagemath-doc-en subpackage
- Create the sagemath-doc-de subpackage
- Create the sagemath-doc-fr subpackage
- Create the sagemath-doc-pt subpackage
- Create the sagemath-doc-ru subpackage
- Create the sagemath-doc-tr subpackage
- Create the sagemath-data metapackage
- Create the sagemath-data-conway_polynomials subpackage
- Create the sagemath-data-elliptic_curves subpackage
- Create the sagemath-data-extcode subpackage
- Do not install pickle_jar extcode contents
- Do not install notebook extcode contents
- Create the sagemath-data-graphs subpackage
- Create the sagemath-data-polytopes_db subpackage
- Create the sagemath-notebook subpackage
- Create the sagemath-rubiks subpackage
- Create the sagemath-sagetex subpackage
* Mon Nov 12 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4-1
- Update to sagemath 5.4.
- Build with system networkx.
- Install only one fallback icon.
- Prevent rpm from providing private shared object.
- Change base directory to %%{_libdir} to avoid rpmlint errors.
- Correct permissions of installed shared objects.
- Rename most patches to use %%{name} prefix as "suggested" by fedora-review.
- Remove bundled jar files before %%build.
- Make cube solvers build optional and disabled by default.
- Add option to run "sage -testall" during package build.
* Sat Nov 10 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.beta1-4
- Add patch to make jmol export image functional
- Update pari patch to use proper path to gprc.expect
- Force usage of firefox in notebook (known to work are firefox and chromium)
* Fri Oct 26 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.beta1-3
- Add support for releases with libmpc 0.9.
* Wed Oct 24 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.beta1-2
- Add Portuguese translations of Tutorial and A Tour of Sage
* Sat Oct 20 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.4.beta1-1
- Update to sagemath 5.4.beta1
- Removed already applied upstream linbox upgrade patch
- Removed already applied upstream givaro upgrade patch
- Removed already applied upstream singular upgrade patch
- Install rubiks spkg binaries
* Wed Sep 12 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.3-1
- Update to sagemath 5.3.
- Remove version from patches name.
- Drop m4ri patch already applied to upstream.
* Fri Sep 7 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.2-2
- Add sphinx workaround to have editable tutorial forms (#839321)
- Make interactive 3d plots using jmol applet functional (#837166)
- Use system genus2reduction
- Add workaround to mp_set_memory_functions call from pari library
* Sat Aug 4 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.2-1
- Update to sagemath 5.2.
* Sun Jul 1 2012 pcpa <paulo.cesar.pereira.de.andrade@gmail.com> - 5.0.1-1
- Initial sagemath spec.
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