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sagemath/sagemath-extensions.patch
Jerry James d510b9edac Version 9.8 
Also:
- Drop upstreamed patches: -fes-build, -python3.11
- Add patches: -catch-value, -gap-split-root, -bind2nd, -mem-fun-ref
2023-03-13 16:09:59 -06:00

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diff -up src/sage/env.py.orig src/sage/env.py
--- src/sage/env.py.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/env.py 2023-03-13 09:26:16.468693261 -0600
@@ -523,7 +523,8 @@ def cython_aliases(required_modules=None
aliases[var + "INCDIR"] = pc['include_dirs']
aliases[var + "LIBDIR"] = pc['library_dirs']
aliases[var + "LIBEXTRA"] = list(filter(lambda s: not s.startswith(('-l','-L')), libs.split()))
- aliases[var + "LIBRARIES"] = pc['libraries']
+ aliases[var + "LIBRARIES"] = pc['libraries'] + ['gomp']
+ aliases['Singular_INCDIR'] = ['/usr/include/singular', '/usr/include/factory']
# uname-specific flags
UNAME = os.uname()
diff -up src/sage/graphs/mcqd.pyx.orig src/sage/graphs/mcqd.pyx
--- src/sage/graphs/mcqd.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/graphs/mcqd.pyx 2023-03-13 09:26:16.468693261 -0600
@@ -1,4 +1,5 @@
# distutils: language = c++
+# distutils: libraries = mcqd
# sage_setup: distribution = sagemath-mcqd
from cysignals.signals cimport sig_on, sig_off
diff -up src/sage/libs/arb/arb.pxd.orig src/sage/libs/arb/arb.pxd
--- src/sage/libs/arb/arb.pxd.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/libs/arb/arb.pxd 2023-03-13 09:26:16.468693261 -0600
@@ -1,4 +1,5 @@
# distutils: libraries = gmp flint ARB_LIBRARY
+# distutils: include_dirs = /usr/include/arb /usr/include/flint
# distutils: depends = arb.h
from sage.libs.arb.types cimport *
diff -up src/sage/libs/arb/arb_version.pyx.orig src/sage/libs/arb/arb_version.pyx
--- src/sage/libs/arb/arb_version.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/libs/arb/arb_version.pyx 2023-03-13 09:26:16.468693261 -0600
@@ -1,4 +1,5 @@
# -*- coding: utf-8
+# distutils: include_dirs = /usr/include/arb /usr/include/flint
from sage.libs.arb.arb cimport arb_version
from sage.cpython.string cimport char_to_str
diff -up src/sage/libs/arb/arith.pyx.orig src/sage/libs/arb/arith.pyx
--- src/sage/libs/arb/arith.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/libs/arb/arith.pyx 2023-03-13 09:26:16.468693261 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/arb /usr/include/flint
"""
Arithmetic functions using the arb library
"""
diff -up src/sage/libs/mpmath/ext_impl.pyx.orig src/sage/libs/mpmath/ext_impl.pyx
--- src/sage/libs/mpmath/ext_impl.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/libs/mpmath/ext_impl.pyx 2023-03-13 09:26:16.469693242 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/flint
"""
This module provides the core implementation of multiprecision
floating-point arithmetic. Operations are done in-place.
diff -up src/sage/libs/mpmath/ext_libmp.pyx.orig src/sage/libs/mpmath/ext_libmp.pyx
--- src/sage/libs/mpmath/ext_libmp.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/libs/mpmath/ext_libmp.pyx 2023-03-13 09:26:16.469693242 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/flint
"""
Faster versions of some key functions in mpmath.libmp
"""
diff -up src/sage/libs/mpmath/ext_main.pyx.orig src/sage/libs/mpmath/ext_main.pyx
--- src/sage/libs/mpmath/ext_main.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/libs/mpmath/ext_main.pyx 2023-03-13 09:26:16.469693242 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/flint
"""
mpmath floating-point numbers
diff -up src/sage/libs/mpmath/utils.pyx.orig src/sage/libs/mpmath/utils.pyx
--- src/sage/libs/mpmath/utils.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/libs/mpmath/utils.pyx 2023-03-13 09:26:16.470693224 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/flint
"""
Utilities for Sage-mpmath interaction
diff -up src/sage/matrix/matrix_complex_ball_dense.pyx.orig src/sage/matrix/matrix_complex_ball_dense.pyx
--- src/sage/matrix/matrix_complex_ball_dense.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/matrix/matrix_complex_ball_dense.pyx 2023-03-13 09:26:16.470693224 -0600
@@ -1,4 +1,5 @@
# distutils: libraries = ARB_LIBRARY
+# distutils: include_dirs = /usr/include/arb /usr/include/flint
r"""
Arbitrary precision complex ball matrices using Arb
diff -up src/sage/matrix/matrix_cyclo_dense.pyx.orig src/sage/matrix/matrix_cyclo_dense.pyx
--- src/sage/matrix/matrix_cyclo_dense.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/matrix/matrix_cyclo_dense.pyx 2023-03-13 09:26:16.470693224 -0600
@@ -1,7 +1,7 @@
# distutils: language = c++
# distutils: libraries = NTL_LIBRARIES
# distutils: extra_compile_args = NTL_CFLAGS
-# distutils: include_dirs = NTL_INCDIR
+# distutils: include_dirs = NTL_INCDIR /usr/include/arb /usr/include/flint
# distutils: library_dirs = NTL_LIBDIR
# distutils: extra_link_args = NTL_LIBEXTRA
"""
diff -up src/sage/matrix/matrix_mpolynomial_dense.pyx.orig src/sage/matrix/matrix_mpolynomial_dense.pyx
--- src/sage/matrix/matrix_mpolynomial_dense.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/matrix/matrix_mpolynomial_dense.pyx 2023-03-13 09:26:16.471693206 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/singular /usr/include/factory
"""
Dense matrices over multivariate polynomials over fields
diff -up src/sage/rings/complex_arb.pyx.orig src/sage/rings/complex_arb.pyx
--- src/sage/rings/complex_arb.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/rings/complex_arb.pyx 2023-03-13 09:26:16.471693206 -0600
@@ -1,4 +1,5 @@
# -*- coding: utf-8
+# distutils: include_dirs = /usr/include/arb /usr/include/flint
r"""
Arbitrary precision complex balls using Arb
diff -up src/sage/rings/number_field/number_field_element_quadratic.pyx.orig src/sage/rings/number_field/number_field_element_quadratic.pyx
--- src/sage/rings/number_field/number_field_element_quadratic.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/rings/number_field/number_field_element_quadratic.pyx 2023-03-13 10:54:33.688631507 -0600
@@ -1,6 +1,6 @@
# distutils: libraries = NTL_LIBRARIES
# distutils: extra_compile_args = NTL_CFLAGS
-# distutils: include_dirs = NTL_INCDIR
+# distutils: include_dirs = NTL_INCDIR /usr/include/arb /usr/include/flint
# distutils: library_dirs = NTL_LIBDIR
# distutils: extra_link_args = NTL_LIBEXTRA
# distutils: language = c++
diff -up src/sage/rings/polynomial/multi_polynomial_libsingular.pyx.orig src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
--- src/sage/rings/polynomial/multi_polynomial_libsingular.pyx.orig 2023-03-13 08:43:44.190347338 -0600
+++ src/sage/rings/polynomial/multi_polynomial_libsingular.pyx 2023-03-13 09:26:16.473693169 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/singular /usr/include/factory
r"""
Multivariate Polynomials via libSINGULAR
diff -up src/sage/rings/polynomial/multi_polynomial.pyx.orig src/sage/rings/polynomial/multi_polynomial.pyx
--- src/sage/rings/polynomial/multi_polynomial.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/rings/polynomial/multi_polynomial.pyx 2023-03-13 09:26:16.473693169 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/singular /usr/include/factory
r"""
Base class for elements of multivariate polynomial rings
"""
diff -up src/sage/rings/polynomial/plural.pyx.orig src/sage/rings/polynomial/plural.pyx
--- src/sage/rings/polynomial/plural.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/rings/polynomial/plural.pyx 2023-03-13 09:26:16.474693151 -0600
@@ -1,3 +1,4 @@
+# distutils: include_dirs = /usr/include/singular /usr/include/factory
r"""
Noncommutative polynomials via libSINGULAR/Plural
diff -up src/sage/rings/polynomial/polynomial_complex_arb.pyx.orig src/sage/rings/polynomial/polynomial_complex_arb.pyx
--- src/sage/rings/polynomial/polynomial_complex_arb.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/rings/polynomial/polynomial_complex_arb.pyx 2023-03-13 09:26:16.474693151 -0600
@@ -1,4 +1,5 @@
# -*- coding: utf-8
+# distutils: include_dirs = /usr/include/arb /usr/include/flint
r"""
Univariate polynomials over `\CC` with interval coefficients using Arb.
diff -up src/sage/rings/real_arb.pyx.orig src/sage/rings/real_arb.pyx
--- src/sage/rings/real_arb.pyx.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage/rings/real_arb.pyx 2023-03-13 09:26:16.474693151 -0600
@@ -1,4 +1,5 @@
# -*- coding: utf-8
+# distutils: include_dirs = /usr/include/arb /usr/include/flint
r"""
Arbitrary precision real balls using Arb
diff -up src/sage_setup/command/sage_build_cython.py.orig src/sage_setup/command/sage_build_cython.py
--- src/sage_setup/command/sage_build_cython.py.orig 2023-02-11 06:25:15.000000000 -0700
+++ src/sage_setup/command/sage_build_cython.py 2023-03-13 09:26:16.475693132 -0600
@@ -205,6 +205,7 @@ class sage_build_cython(Command):
self.library_order = library_order
# Search for dependencies in the source tree and add to the list of include directories
self.sage_include_dirs = sage_include_directories(use_sources=True)
+ self.sage_include_dirs.extend(['@@CYSIGNALS@@'])
from Cython.Build import cythonize
import Cython.Compiler.Options
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